Experiment set4IT018 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 2g/L casamino acids 10mM Ammonium chloride

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS03205 +1.4 8.3 metallophosphoesterase compare
MMJJ_RS01405 +1.4 1.1 proline--tRNA ligase compare
MMJJ_RS04415 +1.2 4.3 hypothetical protein compare
MMJJ_RS06495 +1.1 3.5 hypothetical protein compare
MMJJ_RS05135 +0.8 1.2 50S ribosomal protein L18Ae compare
MMJJ_RS09365 +0.8 1.8 hypothetical protein compare
MMJJ_RS08065 +0.7 0.8 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS06810 +0.7 5.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS06765 +0.6 5.3 hypothetical protein compare
MMJJ_RS07795 +0.6 2.3 cupin domain-containing protein compare
MMJJ_RS05510 +0.6 4.0 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS07790 +0.6 4.5 hypothetical protein compare
MMJJ_RS04180 +0.6 1.6 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS07915 +0.5 2.6 CBS domain-containing protein compare
MMJJ_RS06235 +0.5 4.5 IGHMBP2 family helicase compare
MMJJ_RS06105 +0.5 3.4 DUF99 family protein compare
MMJJ_RS06555 +0.5 3.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS01010 +0.5 4.9 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS06800 +0.5 2.1 prefoldin subunit alpha compare
MMJJ_RS06550 +0.5 3.4 ABC transporter permease compare
MMJJ_RS06580 +0.5 3.1 alanine dehydrogenase compare
MMJJ_RS02885 +0.5 2.1 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMJJ_RS00170 +0.5 2.5 thioredoxin family protein compare
MMJJ_RS04340 +0.5 2.0 hypothetical protein compare
MMJJ_RS08165 +0.5 3.1 thermonuclease family protein compare
MMJJ_RS07480 +0.5 3.7 FAD-dependent oxidoreductase compare
MMJJ_RS04545 +0.5 1.3 PadR family transcriptional regulator compare
MMJJ_RS04215 +0.5 3.6 DMT family transporter compare
MMJJ_RS06585 +0.5 3.1 alanine racemase compare
MMJJ_RS07225 +0.5 2.5 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS07220 +0.4 3.3 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS06960 +0.4 3.7 CAP domain-containing protein compare
MMJJ_RS06275 +0.4 2.3 hypothetical protein compare
MMJJ_RS06515 +0.4 2.9 ribonuclease III compare
MMJJ_RS07270 +0.4 3.1 ribonuclease HII compare
MMJJ_RS06205 +0.4 2.8 EamA family transporter compare
MMJJ_RS06720 +0.4 3.0 mechanosensitive ion channel family protein compare
MMJJ_RS06710 +0.4 3.4 TldD/PmbA family protein compare
MMJJ_RS05700 +0.4 2.7 metallophosphoesterase compare
MMJJ_RS06445 +0.4 3.2 hypothetical protein compare
MMJJ_RS09325 +0.4 2.2 hypothetical protein compare
MMJJ_RS06085 +0.4 1.5 proteasome assembly chaperone family protein compare
MMJJ_RS07825 +0.4 1.3 YciI family protein compare
MMJJ_RS06680 +0.4 1.8 DUF366 family protein compare
MMJJ_RS06770 +0.4 2.8 hypothetical protein compare
MMJJ_RS05280 +0.4 0.4 hypothetical protein compare
MMJJ_RS00885 +0.4 1.8 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS05505 +0.4 3.4 hypothetical protein compare
MMJJ_RS06080 +0.4 2.7 serine/threonine protein kinase compare
MMJJ_RS06440 +0.4 2.1 DUF4870 domain-containing protein compare
MMJJ_RS09405 +0.4 1.1 hypothetical protein compare
MMJJ_RS07815 +0.4 2.7 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS07365 +0.4 2.4 CatB-related O-acetyltransferase compare
MMJJ_RS05685 +0.3 1.7 class III signal peptide-containing protein compare
MMJJ_RS00785 +0.3 1.1 hypothetical protein compare
MMJJ_RS06055 +0.3 2.4 S-methyl-5-thioribose-1-phosphate isomerase compare
MMJJ_RS07200 +0.3 2.5 MFS transporter compare
MMJJ_RS08030 +0.3 2.3 hypothetical protein compare
MMJJ_RS03375 +0.3 1.7 hypothetical protein compare
MMJJ_RS07910 +0.3 2.1 CBS domain-containing protein compare
MMJJ_RS05300 +0.3 2.9 potassium channel protein compare
MMJJ_RS06450 +0.3 2.3 DUF3343 domain-containing protein compare
MMJJ_RS04850 +0.3 1.6 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS01990 +0.3 1.2 universal stress protein compare
MMJJ_RS06470 +0.3 2.2 tripartite tricarboxylate transporter permease compare
MMJJ_RS07420 +0.3 1.9 protease complex subunit PrcB family protein compare
MMJJ_RS07835 +0.3 2.2 UPF0489 family protein compare
MMJJ_RS05730 +0.3 2.2 TIM barrel protein compare
MMJJ_RS07645 +0.3 1.9 selenium-binding protein compare
MMJJ_RS04525 +0.3 1.0 hypothetical protein compare
MMJJ_RS06500 +0.3 1.6 class I SAM-dependent methyltransferase compare
MMJJ_RS07235 +0.3 2.4 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS01650 +0.3 2.6 acetolactate synthase large subunit compare
MMJJ_RS05695 +0.3 1.5 class III signal peptide-containing protein compare
MMJJ_RS04220 +0.3 1.7 helix-turn-helix transcriptional regulator compare
MMJJ_RS07620 +0.3 2.1 class I SAM-dependent rRNA methyltransferase compare
MMJJ_RS05815 +0.3 1.4 hypothetical protein compare
MMJJ_RS01675 +0.3 2.3 malate dehydrogenase compare
MMJJ_RS06640 +0.3 2.0 YfcE family phosphodiesterase compare
MMJJ_RS06430 +0.3 1.7 haloacid dehalogenase compare
MMJJ_RS07255 +0.3 2.6 hypothetical protein compare
MMJJ_RS07215 +0.3 2.1 TIGR00341 family protein compare
MMJJ_RS06075 +0.3 1.5 DNA-binding protein Alba compare
MMJJ_RS07610 +0.3 1.8 DUF2119 domain-containing protein compare
MMJJ_RS04105 +0.3 2.3 prepilin peptidase compare
MMJJ_RS03755 +0.3 1.2 hypothetical protein compare
MMJJ_RS02915 +0.3 1.4 hypothetical protein compare
MMJJ_RS00150 +0.3 1.5 DUF2180 family protein compare
MMJJ_RS05985 +0.3 1.9 ABC transporter substrate-binding protein compare
MMJJ_RS06115 +0.3 1.9 pyruvate kinase compare
MMJJ_RS03185 +0.3 0.3 alanine--tRNA ligase compare
MMJJ_RS06465 +0.3 1.5 hypothetical protein compare
MMJJ_RS05915 +0.3 0.9 multiprotein bridging factor aMBF1 compare
MMJJ_RS08455 +0.3 1.2 tetratricopeptide repeat protein compare
MMJJ_RS07695 +0.3 2.3 glycoside hydrolase family 15 protein compare
MMJJ_RS06590 +0.3 1.9 sodium:alanine symporter family protein compare
MMJJ_RS05890 +0.3 2.1 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS02270 +0.3 1.2 HEPN domain-containing protein compare
MMJJ_RS06385 +0.3 1.4 hypothetical protein compare
MMJJ_RS06130 +0.3 1.3 hypothetical protein compare
MMJJ_RS07935 +0.3 0.3 protein fwdD compare
MMJJ_RS01085 +0.3 1.0 hypothetical protein compare
MMJJ_RS03320 +0.3 1.2 hypothetical protein compare
MMJJ_RS00670 +0.3 1.4 nitrogen fixation compare
MMJJ_RS07385 +0.3 1.8 ribosomal protein S18-alanine N-acetyltransferase compare
MMJJ_RS07805 +0.3 1.1 ferredoxin family protein compare
MMJJ_RS08675 +0.3 1.0 phosphate ABC transporter ATP-binding protein PstB compare
MMJJ_RS04965 +0.3 0.6 RNA polymerase Rpb4 family protein compare
MMJJ_RS09050 +0.3 1.2 hypothetical protein compare
MMJJ_RS08935 +0.3 0.3 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS06560 +0.3 1.9 site-2 protease family protein compare
MMJJ_RS05580 +0.3 1.2 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS01230 +0.3 1.5 EamA family transporter compare
MMJJ_RS09265 +0.3 0.6 hypothetical protein compare
MMJJ_RS05975 +0.3 1.7 sulfurtransferase TusA family protein compare
MMJJ_RS09305 +0.3 1.5 hypothetical protein compare
MMJJ_RS07970 +0.3 0.2 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS09295 +0.3 0.3 hypothetical protein compare
MMJJ_RS06280 +0.3 1.9 hypothetical protein compare
MMJJ_RS07495 +0.3 1.3 4Fe-4S binding protein compare
MMJJ_RS05495 +0.3 1.6 MinD/ParA family protein compare
MMJJ_RS05940 +0.2 1.7 HAD family hydrolase compare
MMJJ_RS07830 +0.2 1.6 DUF1786 domain-containing protein compare
MMJJ_RS06135 +0.2 1.8 50S ribosomal protein L11 methyltransferase compare
MMJJ_RS05035 +0.2 1.3 4Fe-4S binding protein compare
MMJJ_RS07685 +0.2 1.9 glycogen/starch synthase compare
MMJJ_RS07590 +0.2 1.6 flap endonuclease-1 compare
MMJJ_RS06120 +0.2 1.6 DUF4013 domain-containing protein compare
MMJJ_RS03700 +0.2 1.4 hypothetical protein compare
MMJJ_RS03715 +0.2 1.7 hypothetical protein compare
MMJJ_RS06790 +0.2 1.9 nucleotidyltransferase family protein compare
MMJJ_RS04245 +0.2 1.5 flavoprotein compare
MMJJ_RS04055 +0.2 0.9 hypothetical protein compare
MMJJ_RS07445 +0.2 1.4 RlmF-related methyltransferase compare
MMJJ_RS05350 +0.2 1.1 DUF192 domain-containing protein compare
MMJJ_RS05530 +0.2 1.0 roadblock/LC7 domain-containing protein compare
MMJJ_RS06100 +0.2 1.5 rubrerythrin compare
MMJJ_RS04870 +0.2 0.5 tRNA-Asp compare
MMJJ_RS04480 +0.2 0.4 hypothetical protein compare
MMJJ_RS05085 +0.2 1.5 hypothetical protein compare
MMJJ_RS08880 +0.2 1.4 IMPACT family protein compare
MMJJ_RS02285 +0.2 0.7 class III signal peptide-containing protein compare
MMJJ_RS07855 +0.2 1.6 YkgJ family cysteine cluster protein compare
MMJJ_RS03770 +0.2 1.4 hypothetical protein compare
MMJJ_RS01735 +0.2 1.3 rubrerythrin family protein compare
MMJJ_RS03520 +0.2 1.5 hypothetical protein compare
MMJJ_RS06745 +0.2 1.2 energy-coupling factor ABC transporter permease compare
MMJJ_RS06505 +0.2 0.5 prephenate dehydratase compare
MMJJ_RS08930 +0.2 1.4 5'/3'-nucleotidase SurE compare
MMJJ_RS07010 +0.2 1.1 preprotein translocase subunit Sec61beta compare
MMJJ_RS02240 +0.2 1.0 CGGC domain-containing protein compare
MMJJ_RS05875 +0.2 1.9 hypothetical protein compare
MMJJ_RS05895 +0.2 1.7 ABC transporter permease compare
MMJJ_RS01060 +0.2 1.1 ABC transporter ATP-binding protein compare
MMJJ_RS00700 +0.2 1.3 P-II family nitrogen regulator compare
MMJJ_RS02365 +0.2 1.1 DUF2540 domain-containing protein compare
MMJJ_RS00745 +0.2 0.7 hypothetical protein compare
MMJJ_RS06755 +0.2 1.3 diadenylate cyclase compare
MMJJ_RS03690 +0.2 1.0 indolepyruvate oxidoreductase subunit beta compare
MMJJ_RS04820 +0.2 1.4 hypothetical protein compare
MMJJ_RS04695 +0.2 1.6 formate dehydrogenase subunit alpha compare
MMJJ_RS04915 +0.2 1.4 protein-L-isoaspartate O-methyltransferase compare
MMJJ_RS02185 +0.2 1.3 TIGR00296 family protein compare
MMJJ_RS05055 +0.2 1.2 hypothetical protein compare
MMJJ_RS09355 +0.2 0.8 hypothetical protein compare
MMJJ_RS07025 +0.2 0.8 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS02970 +0.2 1.4 DUF378 domain-containing protein compare
MMJJ_RS05335 +0.2 1.0 heavy metal-binding domain-containing protein compare
MMJJ_RS06735 +0.2 1.3 cobalt ECF transporter T component CbiQ compare
MMJJ_RS07635 +0.2 1.1 response regulator transcription factor compare
MMJJ_RS06475 +0.2 1.3 AAA family ATPase compare
MMJJ_RS08370 +0.2 0.8 hypothetical protein compare
MMJJ_RS06455 +0.2 1.2 YeeE/YedE family protein compare
MMJJ_RS07690 +0.2 1.2 glycosyltransferase family 4 protein compare
MMJJ_RS03135 +0.2 0.6 CBS domain-containing protein compare
MMJJ_RS05600 +0.2 1.5 sodium:solute symporter family protein compare
MMJJ_RS05955 +0.2 1.4 radical SAM protein compare
MMJJ_RS07230 +0.2 1.1 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS00555 +0.2 1.2 hypothetical protein compare
MMJJ_RS07650 +0.2 1.4 formate/nitrite transporter family protein compare
MMJJ_RS06685 +0.2 1.5 S-layer protein compare
MMJJ_RS01730 +0.2 1.2 ABC transporter permease compare
MMJJ_RS08045 +0.2 1.3 transporter substrate-binding domain-containing protein compare
MMJJ_RS07890 +0.2 0.9 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS07210 +0.2 1.2 AmmeMemoRadiSam system protein B compare
MMJJ_RS05240 +0.2 1.5 type II secretion system F family protein compare
MMJJ_RS00940 +0.2 1.3 aldo/keto reductase compare
MMJJ_RS00410 +0.2 1.0 hypothetical protein compare
MMJJ_RS05880 +0.2 1.6 hypothetical protein compare
MMJJ_RS07985 +0.2 0.7 hypothetical protein compare
MMJJ_RS05400 +0.2 0.8 CoA-binding protein compare
MMJJ_RS04365 +0.2 0.8 helix-turn-helix transcriptional regulator compare
MMJJ_RS03525 +0.2 1.2 2-hydroxyacyl-CoA dehydratase family protein compare
MMJJ_RS07760 +0.2 0.9 GNAT family N-acetyltransferase compare
MMJJ_RS09360 +0.2 0.9 hypothetical protein compare
MMJJ_RS05705 +0.2 1.3 hypothetical protein compare
MMJJ_RS08210 +0.2 1.6 hypothetical protein compare
MMJJ_RS03940 +0.2 0.8 DMT family transporter compare
MMJJ_RS02865 +0.2 0.7 amino acid ABC transporter substrate-binding protein compare
MMJJ_RS06460 +0.2 0.9 cytochrome c compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source casamino acids across organisms