Experiment set4IT016 for Methanococcus maripaludis JJ

Compare to:

H2 N-free with 2g/L casamino acids 10mM Ammonium chloride

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS05935 +1.7 0.9 Era-like GTP-binding protein compare
MMJJ_RS03205 +1.4 6.7 metallophosphoesterase compare
MMJJ_RS09295 +1.0 1.2 hypothetical protein compare
MMJJ_RS04415 +0.7 2.4 hypothetical protein compare
MMJJ_RS01530 +0.7 1.0 YwbE family protein compare
MMJJ_RS08065 +0.7 0.7 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS05510 +0.6 4.2 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS09265 +0.6 2.1 hypothetical protein compare
MMJJ_RS01010 +0.6 5.4 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS01405 +0.6 0.4 proline--tRNA ligase compare
MMJJ_RS08515 +0.6 2.6 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS05970 +0.5 1.9 MJ0307 family thioredoxin compare
MMJJ_RS06205 +0.5 3.9 EamA family transporter compare
MMJJ_RS08165 +0.5 3.4 thermonuclease family protein compare
MMJJ_RS07230 +0.5 3.5 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS07915 +0.5 3.0 CBS domain-containing protein compare
MMJJ_RS06385 +0.5 2.3 hypothetical protein compare
MMJJ_RS03320 +0.5 2.5 hypothetical protein compare
MMJJ_RS05685 +0.5 2.3 class III signal peptide-containing protein compare
MMJJ_RS06765 +0.5 3.9 hypothetical protein compare
MMJJ_RS06680 +0.5 2.5 DUF366 family protein compare
MMJJ_RS08390 +0.5 1.1 carboxymuconolactone decarboxylase family protein compare
MMJJ_RS05300 +0.5 4.0 potassium channel protein compare
MMJJ_RS09050 +0.5 2.3 hypothetical protein compare
MMJJ_RS04215 +0.5 3.6 DMT family transporter compare
MMJJ_RS01590 +0.4 0.8 adenine phosphoribosyltransferase compare
MMJJ_RS07795 +0.4 2.7 cupin domain-containing protein compare
MMJJ_RS06580 +0.4 3.1 alanine dehydrogenase compare
MMJJ_RS05505 +0.4 4.1 hypothetical protein compare
MMJJ_RS05605 +0.4 2.2 hypothetical protein compare
MMJJ_RS07790 +0.4 2.7 hypothetical protein compare
MMJJ_RS02285 +0.4 1.6 class III signal peptide-containing protein compare
MMJJ_RS07825 +0.4 2.0 YciI family protein compare
MMJJ_RS05915 +0.4 1.4 multiprotein bridging factor aMBF1 compare
MMJJ_RS09010 +0.4 2.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMJJ_RS07985 +0.4 2.0 hypothetical protein compare
MMJJ_RS06445 +0.4 3.3 hypothetical protein compare
MMJJ_RS07445 +0.4 2.7 RlmF-related methyltransferase compare
MMJJ_RS00785 +0.4 1.1 hypothetical protein compare
MMJJ_RS06100 +0.4 2.6 rubrerythrin compare
MMJJ_RS05090 +0.4 2.0 MGMT family protein compare
MMJJ_RS05410 +0.4 2.4 RecB-family nuclease compare
MMJJ_RS06515 +0.4 2.7 ribonuclease III compare
MMJJ_RS06235 +0.4 3.3 IGHMBP2 family helicase compare
MMJJ_RS07200 +0.4 3.0 MFS transporter compare
MMJJ_RS07610 +0.4 2.2 DUF2119 domain-containing protein compare
MMJJ_RS06720 +0.4 2.8 mechanosensitive ion channel family protein compare
MMJJ_RS04480 +0.4 1.1 hypothetical protein compare
MMJJ_RS07695 +0.4 3.2 glycoside hydrolase family 15 protein compare
MMJJ_RS06770 +0.4 2.7 hypothetical protein compare
MMJJ_RS06130 +0.4 1.8 hypothetical protein compare
MMJJ_RS06085 +0.4 1.7 proteasome assembly chaperone family protein compare
MMJJ_RS06810 +0.4 2.8 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS06960 +0.4 3.0 CAP domain-containing protein compare
MMJJ_RS05335 +0.3 2.0 heavy metal-binding domain-containing protein compare
MMJJ_RS09325 +0.3 2.1 hypothetical protein compare
MMJJ_RS01250 +0.3 1.3 hypothetical protein compare
MMJJ_RS06105 +0.3 2.4 DUF99 family protein compare
MMJJ_RS05035 +0.3 2.1 4Fe-4S binding protein compare
MMJJ_RS04525 +0.3 1.5 hypothetical protein compare
MMJJ_RS01085 +0.3 2.0 hypothetical protein compare
MMJJ_RS02270 +0.3 1.3 HEPN domain-containing protein compare
MMJJ_RS06800 +0.3 2.0 prefoldin subunit alpha compare
MMJJ_RS08820 +0.3 1.4 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS06585 +0.3 2.3 alanine racemase compare
MMJJ_RS04105 +0.3 2.6 prepilin peptidase compare
MMJJ_RS05135 +0.3 0.4 50S ribosomal protein L18Ae compare
MMJJ_RS06135 +0.3 2.3 50S ribosomal protein L11 methyltransferase compare
MMJJ_RS07220 +0.3 2.5 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS07385 +0.3 2.4 ribosomal protein S18-alanine N-acetyltransferase compare
MMJJ_RS05975 +0.3 2.1 sulfurtransferase TusA family protein compare
MMJJ_RS07855 +0.3 2.4 YkgJ family cysteine cluster protein compare
MMJJ_RS07910 +0.3 2.1 CBS domain-containing protein compare
MMJJ_RS09330 +0.3 1.5 hypothetical protein compare
MMJJ_RS03805 +0.3 0.9 hypothetical protein compare
MMJJ_RS07215 +0.3 2.3 TIGR00341 family protein compare
MMJJ_RS06080 +0.3 2.2 serine/threonine protein kinase compare
MMJJ_RS06440 +0.3 1.7 DUF4870 domain-containing protein compare
MMJJ_RS04175 +0.3 1.6 hypothetical protein compare
MMJJ_RS09390 +0.3 0.6 hypothetical protein compare
MMJJ_RS06710 +0.3 2.6 TldD/PmbA family protein compare
MMJJ_RS08030 +0.3 1.9 hypothetical protein compare
MMJJ_RS05700 +0.3 1.9 metallophosphoesterase compare
MMJJ_RS07235 +0.3 2.4 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS05730 +0.3 2.0 TIM barrel protein compare
MMJJ_RS06495 +0.3 0.8 hypothetical protein compare
MMJJ_RS06275 +0.3 1.1 hypothetical protein compare
MMJJ_RS07920 +0.3 2.0 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS06465 +0.3 1.6 hypothetical protein compare
MMJJ_RS03725 +0.3 1.1 sulfurtransferase TusA family protein compare
MMJJ_RS06540 +0.3 0.7 DUF2120 domain-containing protein compare
MMJJ_RS05350 +0.3 1.3 DUF192 domain-containing protein compare
MMJJ_RS07210 +0.3 2.1 AmmeMemoRadiSam system protein B compare
MMJJ_RS06115 +0.3 1.9 pyruvate kinase compare
MMJJ_RS05150 +0.3 1.9 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06120 +0.3 1.7 DUF4013 domain-containing protein compare
MMJJ_RS07645 +0.3 1.7 selenium-binding protein compare
MMJJ_RS01275 +0.3 1.0 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07620 +0.3 1.7 class I SAM-dependent rRNA methyltransferase compare
MMJJ_RS07905 +0.3 1.6 DUF89 domain-containing protein compare
MMJJ_RS09210 +0.3 1.7 lysine exporter LysO family protein compare
MMJJ_RS08370 +0.2 0.7 hypothetical protein compare
MMJJ_RS06470 +0.2 1.7 tripartite tricarboxylate transporter permease compare
MMJJ_RS04180 +0.2 0.7 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS07420 +0.2 1.4 protease complex subunit PrcB family protein compare
MMJJ_RS05890 +0.2 1.8 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS05495 +0.2 1.6 MinD/ParA family protein compare
MMJJ_RS08300 +0.2 2.0 hypothetical protein compare
MMJJ_RS08650 +0.2 1.7 TfuA-like protein compare
MMJJ_RS07010 +0.2 1.4 preprotein translocase subunit Sec61beta compare
MMJJ_RS07365 +0.2 1.6 CatB-related O-acetyltransferase compare
MMJJ_RS05340 +0.2 1.8 AAA family ATPase compare
MMJJ_RS03515 +0.2 1.5 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS09365 +0.2 0.6 hypothetical protein compare
MMJJ_RS06280 +0.2 1.7 hypothetical protein compare
MMJJ_RS07760 +0.2 1.6 GNAT family N-acetyltransferase compare
MMJJ_RS07255 +0.2 2.0 hypothetical protein compare
MMJJ_RS07025 +0.2 1.3 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS08415 +0.2 1.8 corrinoid protein compare
MMJJ_RS03425 +0.2 0.9 DUF2080 family transposase-associated protein compare
MMJJ_RS07815 +0.2 1.7 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS04915 +0.2 1.8 protein-L-isoaspartate O-methyltransferase compare
MMJJ_RS01650 +0.2 1.9 acetolactate synthase large subunit compare
MMJJ_RS02905 +0.2 0.6 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMJJ_RS07685 +0.2 1.9 glycogen/starch synthase compare
MMJJ_RS05980 +0.2 1.5 DUF5400 domain-containing protein compare
MMJJ_RS08215 +0.2 1.5 radical SAM protein compare
MMJJ_RS05245 +0.2 1.5 type II secretion system F family protein compare
MMJJ_RS06430 +0.2 1.4 haloacid dehalogenase compare
MMJJ_RS05600 +0.2 1.9 sodium:solute symporter family protein compare
MMJJ_RS08200 +0.2 1.8 surface protein, anchor region compare
MMJJ_RS02075 +0.2 0.8 acyl-CoA thioesterase compare
MMJJ_RS09360 +0.2 1.5 hypothetical protein compare
MMJJ_RS04850 +0.2 1.0 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS02185 +0.2 1.4 TIGR00296 family protein compare
MMJJ_RS06550 +0.2 1.5 ABC transporter permease compare
MMJJ_RS05985 +0.2 1.3 ABC transporter substrate-binding protein compare
MMJJ_RS06450 +0.2 1.6 DUF3343 domain-containing protein compare
MMJJ_RS04855 +0.2 1.6 ECF transporter S component compare
MMJJ_RS09225 +0.2 1.3 hypothetical protein compare
MMJJ_RS04100 +0.2 1.6 class III signal peptide-containing protein compare
MMJJ_RS04300 +0.2 1.1 hypothetical protein compare
MMJJ_RS06640 +0.2 1.4 YfcE family phosphodiesterase compare
MMJJ_RS07765 +0.2 0.7 DMT family protein compare
MMJJ_RS05690 +0.2 1.9 hypothetical protein compare
MMJJ_RS05095 +0.2 1.6 ammonium transporter compare
MMJJ_RS02095 +0.2 1.1 DUF2124 family protein compare
MMJJ_RS07835 +0.2 1.2 UPF0489 family protein compare
MMJJ_RS09235 +0.2 0.7 helix-turn-helix transcriptional regulator compare
MMJJ_RS06160 +0.2 1.3 stage II sporulation protein M compare
MMJJ_RS07480 +0.2 1.6 FAD-dependent oxidoreductase compare
MMJJ_RS09000 +0.2 1.7 restriction endonuclease compare
MMJJ_RS05365 +0.2 1.1 DUF2798 domain-containing protein compare
MMJJ_RS06520 +0.2 1.4 TldD/PmbA family protein compare
MMJJ_RS08690 +0.2 1.2 phosphate ABC transporter substrate-binding protein compare
MMJJ_RS07225 +0.2 1.2 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS06790 +0.2 1.5 nucleotidyltransferase family protein compare
MMJJ_RS09110 +0.2 1.5 PEGA domain-containing protein compare
MMJJ_RS07960 +0.2 0.2 quinolinate synthase NadA compare
MMJJ_RS02955 +0.2 1.4 glutamate-cysteine ligase family protein compare
MMJJ_RS08270 +0.2 1.3 iron ABC transporter substrate-binding protein compare
MMJJ_RS06295 +0.2 1.1 DUF2096 family protein compare
MMJJ_RS07860 +0.2 0.9 hypothetical protein compare
MMJJ_RS05955 +0.2 1.4 radical SAM protein compare
MMJJ_RS05500 +0.2 1.6 hypothetical protein compare
MMJJ_RS05190 +0.2 1.0 gamma carbonic anhydrase family protein compare
MMJJ_RS08900 +0.2 1.3 DUF523 and DUF1722 domain-containing protein compare
MMJJ_RS05235 +0.2 1.5 Flp pilus assembly complex ATPase component TadA compare
MMJJ_RS06290 +0.2 1.1 DUF749 domain-containing protein compare
MMJJ_RS06500 +0.2 1.0 class I SAM-dependent methyltransferase compare
MMJJ_RS01510 +0.2 1.2 ATP-binding protein compare
MMJJ_RS02865 +0.2 0.8 amino acid ABC transporter substrate-binding protein compare
MMJJ_RS05940 +0.2 1.2 HAD family hydrolase compare
MMJJ_RS06755 +0.2 1.3 diadenylate cyclase compare
MMJJ_RS07890 +0.2 0.9 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS07800 +0.2 1.4 AMP-binding protein compare
MMJJ_RS09305 +0.2 1.0 hypothetical protein compare
MMJJ_RS04560 +0.2 1.1 ABC transporter permease compare
MMJJ_RS04265 +0.2 0.9 FmdE family protein compare
MMJJ_RS01990 +0.2 0.6 universal stress protein compare
MMJJ_RS08375 +0.2 1.1 ferritin compare
MMJJ_RS07450 +0.2 1.0 hypothetical protein compare
MMJJ_RS04235 +0.2 0.9 molybdate ABC transporter permease subunit compare
MMJJ_RS07400 +0.2 0.6 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMJJ_RS07205 +0.2 1.1 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS03770 +0.2 1.0 hypothetical protein compare
MMJJ_RS01580 +0.2 1.1 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS02290 +0.2 1.1 MarR family transcriptional regulator compare
MMJJ_RS04290 +0.2 0.9 hypothetical protein compare
MMJJ_RS07830 +0.2 1.1 DUF1786 domain-containing protein compare
MMJJ_RS01950 +0.2 1.1 hypothetical protein compare
MMJJ_RS05705 +0.2 1.2 hypothetical protein compare
MMJJ_RS08420 +0.2 1.3 uroporphyrinogen decarboxylase family protein compare
MMJJ_RS08455 +0.2 0.7 tetratricopeptide repeat protein compare
MMJJ_RS04745 +0.2 0.9 cyclase family protein compare
MMJJ_RS06075 +0.2 1.0 DNA-binding protein Alba compare
MMJJ_RS09020 +0.2 0.7 hypothetical protein compare
MMJJ_RS08655 +0.2 1.2 phospholipase D-like domain-containing protein compare
MMJJ_RS05050 +0.2 1.3 CPBP family intramembrane metalloprotease compare
MMJJ_RS05205 +0.2 1.1 DUF2118 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source casamino acids across organisms