Experiment set4IT010 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Urea nitrogen source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -6.3 -7.4 tetratricopeptide repeat protein compare
PFLU_RS01645 -6.0 -8.3 S41 family peptidase compare
PFLU_RS14550 -5.5 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28695 -5.4 -3.7 phosphoglycerate dehydrogenase compare
PFLU_RS26545 -4.6 -14.9 sel1 repeat family protein compare
PFLU_RS25760 -4.5 -10.9 glucose-6-phosphate isomerase compare
PFLU_RS20690 -4.4 -6.3 hypothetical protein compare
PFLU_RS24125 -4.3 -3.0 cold-shock protein compare
PFLU_RS02490 -4.3 -13.5 phosphoserine phosphatase SerB compare
PFLU_RS01895 -4.2 -8.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS28535 -4.2 -16.9 dihydroxy-acid dehydratase compare
PFLU_RS04465 -4.1 -10.6 ATP phosphoribosyltransferase compare
PFLU_RS01605 -4.1 -10.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS02050 -4.0 -19.5 NAD(P)-binding protein compare
PFLU_RS28645 -4.0 -18.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22095 -4.0 -21.7 GTP diphosphokinase compare
PFLU_RS23065 -4.0 -11.0 phosphate acyltransferase PlsX compare
PFLU_RS01610 -3.9 -13.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS29095 -3.9 -27.3 polyphosphate kinase 1 compare
PFLU_RS08160 -3.8 -4.6 sugar transferase compare
PFLU_RS22595 -3.8 -2.6 OmpA family protein compare
PFLU_RS07695 -3.8 -5.1 beta-N-acetylhexosaminidase compare
PFLU_RS02045 -3.7 -24.8 glutamate synthase large subunit compare
PFLU_RS12975 -3.6 -6.7 DUF934 domain-containing protein compare
PFLU_RS01900 -3.6 -9.7 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS29880 -3.5 -16.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS01620 -3.5 -10.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29875 -3.5 -17.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS04470 -3.5 -13.6 histidinol dehydrogenase compare
PFLU_RS29885 -3.5 -12.8 LysR family transcriptional regulator compare
PFLU_RS25360 -3.4 -8.5 glutamate 5-kinase compare
PFLU_RS25640 -3.4 -14.2 ketol-acid reductoisomerase compare
PFLU_RS09055 -3.3 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS18505 -3.3 -12.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS04070 -3.3 -6.3 peptide chain release factor 3 compare
PFLU_RS22740 -3.3 -6.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS02590 -3.2 -10.3 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28165 -3.2 -14.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS29515 -3.2 -14.0 RidA family protein compare
PFLU_RS00175 -3.2 -9.1 tryptophan synthase subunit alpha compare
PFLU_RS12980 -3.1 -11.9 nitrite/sulfite reductase compare
PFLU_RS06320 -3.1 -4.1 OmpH family outer membrane protein compare
PFLU_RS23590 -3.1 -3.4 gluconokinase compare
PFLU_RS25735 -3.1 -9.1 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25755 -3.1 -4.2 pantoate--beta-alanine ligase compare
PFLU_RS28965 -3.1 -11.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS04660 -3.1 -7.8 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS28390 -3.1 -12.1 methionine biosynthesis protein MetW compare
PFLU_RS24485 -3.0 -11.7 hypothetical protein compare
PFLU_RS28655 -2.9 -15.6 HAD family hydrolase compare
PFLU_RS20540 -2.9 -13.5 phosphoribosylanthranilate isomerase compare
PFLU_RS23725 -2.9 -14.2 glucose-6-phosphate dehydrogenase compare
PFLU_RS22105 -2.9 -6.8 cysteine synthase CysM compare
PFLU_RS00180 -2.8 -9.2 tryptophan synthase subunit beta compare
PFLU_RS28385 -2.8 -14.6 homoserine O-acetyltransferase compare
PFLU_RS01685 -2.8 -6.7 nitrogen regulation protein NR(I) compare
PFLU_RS24025 -2.8 -13.0 quinolinate synthase NadA compare
PFLU_RS20510 -2.8 -15.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24330 -2.8 -8.2 phosphogluconate dehydratase compare
PFLU_RS23305 -2.8 -12.5 arginine N-succinyltransferase compare
PFLU_RS13485 -2.8 -16.9 1,4-alpha-glucan branching protein GlgB compare
PFLU_RS08165 -2.8 -3.2 acyl carrier protein compare
PFLU_RS28195 -2.8 -16.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS03970 -2.8 -9.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS23310 -2.7 -10.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS24765 -2.7 -18.9 2-isopropylmalate synthase compare
PFLU_RS27365 -2.6 -11.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS25750 -2.6 -6.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS03555 -2.6 -1.5 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS27630 -2.6 -6.8 dethiobiotin synthase compare
PFLU_RS01690 -2.6 -9.4 nitrogen regulation protein NR(II) compare
PFLU_RS27650 -2.5 -15.4 biotin synthase BioB compare
PFLU_RS23585 -2.5 -8.7 GntP family permease compare
PFLU_RS18530 -2.5 -6.2 DNA translocase FtsK compare
PFLU_RS02365 -2.5 -13.6 glycosyltransferase compare
PFLU_RS20515 -2.5 -4.9 amidophosphoribosyltransferase compare
PFLU_RS31800 -2.5 -2.6 hypothetical protein compare
PFLU_RS04715 -2.4 -5.8 D-alanine--D-alanine ligase compare
PFLU_RS27370 -2.4 -12.3 anthranilate phosphoribosyltransferase compare
PFLU_RS21495 -2.4 -3.9 TlpA family protein disulfide reductase compare
PFLU_RS20565 -2.4 -14.8 3-isopropylmalate dehydrogenase compare
PFLU_RS26595 -2.4 -1.6 lipoprotein compare
PFLU_RS00415 -2.4 -2.3 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS24095 -2.4 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS30525 -2.3 -10.6 SDR family oxidoreductase compare
PFLU_RS20580 -2.3 -11.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS26640 -2.2 -12.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS09980 -2.2 -14.7 peptidase S41 compare
PFLU_RS03770 -2.2 -11.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS27645 -2.2 -12.3 8-amino-7-oxononanoate synthase compare
PFLU_RS27635 -2.2 -9.0 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS30530 -2.1 -7.2 acetyltransferase compare
PFLU_RS04430 -2.1 -8.8 ATP-binding cassette domain-containing protein compare
PFLU_RS01625 -2.1 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS03765 -2.1 -11.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS04435 -2.1 -7.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS26770 -2.1 -12.4 DedA family protein compare
PFLU_RS22070 -2.1 -5.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS07275 -2.1 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS28690 -2.1 -11.6 FAD-binding oxidoreductase compare
PFLU_RS25225 -2.0 -8.7 disulfide bond formation protein B compare
PFLU_RS04315 -2.0 -3.1 rod shape-determining protein MreD compare
PFLU_RS08505 -2.0 -7.6 protease HtpX compare
PFLU_RS24825 -2.0 -3.7 Fe-S cluster assembly protein IscX compare
PFLU_RS19175 -2.0 -8.6 trigger factor compare
PFLU_RS27640 -2.0 -3.4 alpha/beta fold hydrolase compare
PFLU_RS01485 -2.0 -12.2 cellulase compare
PFLU_RS19165 -1.9 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS13540 -1.9 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS06555 -1.9 -10.0 OmpA family protein compare
PFLU_RS00695 -1.9 -1.5 DUF2789 domain-containing protein compare
PFLU_RS24085 -1.8 -3.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS23920 -1.8 -2.5 septation protein A compare
PFLU_RS29550 -1.8 -8.6 ATP-dependent DNA helicase RecG compare
PFLU_RS28650 -1.8 -6.8 RNA pyrophosphohydrolase compare
PFLU_RS24335 -1.8 -11.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS18655 -1.8 -2.7 NADH-quinone oxidoreductase subunit J compare
PFLU_RS25585 -1.8 -1.7 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25715 -1.8 -9.7 RNA polymerase-binding protein DksA compare
PFLU_RS25730 -1.8 -12.3 PAS domain S-box protein compare
PFLU_RS07785 -1.7 -10.5 VacJ family lipoprotein compare
PFLU_RS15610 -1.7 -5.9 helix-turn-helix transcriptional regulator compare
PFLU_RS26735 -1.7 -8.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS24670 -1.7 -3.0 HigA family addiction module antidote protein compare
PFLU_RS24090 -1.7 -3.3 Holliday junction branch migration protein RuvA compare
PFLU_RS07650 -1.7 -11.1 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04445 -1.7 -6.6 ABC transporter substrate-binding protein compare
PFLU_RS08180 -1.7 -5.0 ketoacyl-ACP synthase III compare
PFLU_RS07225 -1.7 -11.3 L-aspartate oxidase compare
PFLU_RS13370 -1.6 -1.9 DUF2790 domain-containing protein compare
PFLU_RS04325 -1.6 -12.0 ribonuclease G compare
PFLU_RS23070 -1.6 -1.6 50S ribosomal protein L32 compare
PFLU_RS04385 -1.6 -8.5 RNase adapter RapZ compare
PFLU_RS30165 -1.6 -7.6 ParA family protein compare
PFLU_RS04440 -1.6 -8.8 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS18675 -1.6 -2.6 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS20575 -1.5 -4.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS18670 -1.5 -1.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS20520 -1.5 -7.7 colicin V production protein CvpA compare
PFLU_RS20955 -1.5 -2.3 DUF1028 domain-containing protein compare
PFLU_RS01965 -1.5 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS03610 -1.5 -5.7 redox-regulated ATPase YchF compare
PFLU_RS25925 -1.5 -2.8 RnfH family protein compare
PFLU_RS27620 -1.5 -11.6 acyl-CoA dehydrogenase compare
PFLU_RS19170 -1.5 -3.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18615 -1.5 -2.6 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24785 -1.5 -8.1 outer membrane protein assembly factor BamB compare
PFLU_RS29275 -1.5 -4.4 DUF484 family protein compare
PFLU_RS30520 -1.5 -5.8 ketoacyl-ACP synthase III compare
PFLU_RS25740 -1.4 -5.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS11845 -1.4 -3.2 DUF4880 domain-containing protein compare
PFLU_RS27265 -1.4 -3.0 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS28310 -1.4 -1.6 response regulator compare
PFLU_RS24790 -1.4 -4.2 tetratricopeptide repeat protein compare
PFLU_RS04220 -1.4 -6.6 FadR family transcriptional regulator compare
PFLU_RS28725 -1.4 -9.1 DUF2059 domain-containing protein compare
PFLU_RS01390 -1.4 -4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS07665 -1.4 -1.7 type I DNA topoisomerase compare
PFLU_RS09305 -1.3 -9.4 hypothetical protein compare
PFLU_RS06420 -1.3 -7.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
PFLU_RS25920 -1.3 -3.4 outer membrane protein assembly factor BamE compare
PFLU_RS20660 -1.3 -6.9 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS25645 -1.3 -1.5 acetolactate synthase small subunit compare
PFLU_RS07670 -1.3 -6.9 hypothetical protein compare
PFLU_RS04650 -1.3 -9.9 ABC transporter substrate-binding protein compare
PFLU_RS08155 -1.3 -3.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS15410 -1.3 -2.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS02040 -1.3 -4.5 hypothetical protein compare
PFLU_RS18420 -1.3 -2.8 hypothetical protein compare
PFLU_RS08065 -1.3 -6.9 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS22455 -1.3 -7.5 hypothetical protein compare
PFLU_RS21300 -1.2 -4.6 cysteine hydrolase compare
PFLU_RS01380 -1.2 -4.2 GMP/IMP nucleotidase compare
PFLU_RS01650 -1.2 -5.9 murein hydrolase activator EnvC compare
PFLU_RS27380 -1.2 -6.9 anthranilate synthase component I compare
PFLU_RS30645 -1.2 -2.3 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS13035 -1.2 -2.9 cobalamin biosynthesis protein CobW compare
PFLU_RS01910 -1.2 -2.1 sterol-binding protein compare
PFLU_RS27475 -1.2 -5.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS26905 -1.2 -6.2 transcriptional regulator NrdR compare
PFLU_RS02790 -1.2 -1.5 TetR family transcriptional regulator compare
PFLU_RS14805 -1.2 -1.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS29090 -1.2 -5.7 exopolyphosphatase compare
PFLU_RS24255 -1.2 -7.3 pyruvate kinase compare
PFLU_RS01875 -1.2 -1.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS29490 -1.2 -5.8 ribonuclease PH compare
PFLU_RS18635 -1.2 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS21985 -1.2 -3.0 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS29065 -1.2 -1.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS18665 -1.2 -3.1 NADH-quinone oxidoreductase subunit L compare
PFLU_RS14195 -1.1 -2.0 hypothetical protein compare
PFLU_RS30160 -1.1 -2.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS10660 -1.1 -2.6 DUF1652 domain-containing protein compare
PFLU_RS02460 -1.1 -7.5 alpha/beta fold hydrolase compare
PFLU_RS18005 -1.1 -2.4 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS05885 -1.1 -4.3 recombinase RecA compare
PFLU_RS31100 -1.1 -3.2 preprotein translocase subunit SecG compare
PFLU_RS02000 -1.1 -10.0 penicillin-binding protein 1A compare
PFLU_RS13010 -1.1 -3.6 Fe-S biogenesis protein NfuA compare
PFLU_RS22600 -1.1 -1.8 RNA polymerase sigma factor SigX compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms