Experiment set4IT007 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Sodium Chlorite 1.25 mM

200 most important genes:

  gene name fitness t score description  
Ga0059261_2285 -5.1 -3.5 Fe2+ transport system protein A compare
Ga0059261_3488 -3.5 -3.4 Histidine kinase/HAMP domain compare
Ga0059261_1560 -3.5 -3.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_2189 -3.1 -8.9 uncharacterized domain 1 compare
Ga0059261_1382 -3.1 -8.0 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_4188 -3.1 -7.1 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_4187 -3.0 -12.0 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_1605 -2.9 -9.4 transcriptional regulator, TetR family compare
Ga0059261_1369 -2.9 -12.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_2286 -2.7 -7.1 Fe2+ transport system protein B compare
Ga0059261_1565 -2.7 -14.7 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_1564 -2.6 -5.1 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_0171 -2.5 -3.3 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_2490 -2.5 -6.5 Small protein A (tmRNA-binding) compare
Ga0059261_1257 -2.5 -10.9 Uncharacterized iron-regulated protein compare
Ga0059261_1911 -2.5 -2.8 Thioredoxin-like proteins and domains compare
Ga0059261_1370 -2.4 -9.2 Signal transduction histidine kinase compare
Ga0059261_0931 -2.4 -3.5 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_1562 -2.4 -7.0 Uncharacterized conserved protein compare
Ga0059261_0170 -2.4 -5.7 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_3276 -2.3 -9.5 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_1985 -2.3 -3.9 transcriptional regulator NrdR compare
Ga0059261_1912 -2.3 -4.9 Nitroreductase compare
Ga0059261_2444 -2.2 -7.1 5-aminolevulinic acid synthase compare
Ga0059261_1287 -2.2 -10.4 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_1507 -2.2 -3.2 deoxycytidine triphosphate deaminase compare
Ga0059261_1561 -2.2 -7.9 Signal transduction histidine kinase compare
Ga0059261_1258 -2.2 -18.6 TonB-dependent siderophore receptor compare
Ga0059261_2501 -2.2 -9.6 C-terminal peptidase (prc) compare
Ga0059261_1451 -2.1 -5.4 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_2314 -2.1 -5.4 Protein-disulfide isomerase compare
Ga0059261_2707 -2.1 -7.7 fructose-1,6-bisphosphatase, class II compare
Ga0059261_0175 -2.1 -8.1 heme exporter protein CcmC compare
Ga0059261_2179 -2.1 -10.1 Phospholipid N-methyltransferase compare
Ga0059261_3637 -2.1 -2.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_2417 -2.1 -4.5 phytoene desaturase compare
Ga0059261_0613 -2.0 -4.4 FecR family protein compare
Ga0059261_1566 -2.0 -8.2 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_3866 -2.0 -11.0 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) conserved
Ga0059261_3671 -2.0 -3.3 Citrate lyase beta subunit compare
Ga0059261_0163 -2.0 -4.0 Major Facilitator Superfamily compare
Ga0059261_0349 -2.0 -4.8 MarR family compare
Ga0059261_3865 -1.9 -8.7 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) conserved
Ga0059261_2244 -1.9 -11.3 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_0790 -1.9 -3.2 putative membrane protein insertion efficiency factor compare
Ga0059261_1563 -1.9 -3.0 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_3625 -1.8 -5.0 Short-chain dehydrogenases of various substrate specificities compare
Ga0059261_3101 -1.8 -4.0 nucleotide sugar dehydrogenase compare
Ga0059261_3160 -1.8 -4.5 TolQ protein compare
Ga0059261_3615 -1.8 -2.0 hypothetical protein compare
Ga0059261_0204 -1.7 -4.8 protein RecA compare
Ga0059261_0172 -1.7 -7.9 Cytochrome c biogenesis factor compare
Ga0059261_4186 -1.7 -2.3 Phosphopantetheine attachment site compare
Ga0059261_2267 -1.7 -11.0 Predicted Rossmann fold nucleotide-binding protein compare
Ga0059261_1696 -1.6 -4.4 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_0037 -1.6 -9.1 hypothetical protein compare
Ga0059261_3191 -1.6 -6.2 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_3211 -1.6 -8.1 hypothetical protein compare
Ga0059261_3159 -1.6 -4.3 TolR protein compare
Ga0059261_2326 -1.5 -5.6 Phosphohistidine phosphatase SixA compare
Ga0059261_2021 -1.5 -10.6 Protein of unknown function (DUF2029) compare
Ga0059261_3341 -1.5 -5.8 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_3156 -1.5 -4.6 peptidoglycan-associated lipoprotein compare
Ga0059261_3097 -1.5 -5.5 Calcineurin-like phosphoesterase compare
Ga0059261_0245 -1.4 -2.2 pseudouridine synthase compare
Ga0059261_0174 -1.4 -2.7 hypothetical protein compare
Ga0059261_3153 -1.4 -3.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_1868 -1.4 -3.1 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_0991 -1.3 -7.4 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Ga0059261_3103 -1.3 -3.9 Glycosyltransferase compare
Ga0059261_1909 -1.3 -6.0 MAF protein compare
Ga0059261_4209 -1.3 -9.8 Transglycosylase SLT domain compare
Ga0059261_2315 -1.3 -7.6 Protein-disulfide isomerase compare
Ga0059261_3157 -1.3 -9.2 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_3219 -1.3 -4.4 ubiquinol-cytochrome c reductase, iron-sulfur subunit compare
Ga0059261_4204 -1.3 -4.3 transcriptional regulator, TetR family compare
Ga0059261_1339 -1.3 -1.6 hypothetical protein compare
Ga0059261_2213 -1.2 -5.2 Domain of unknown function (DUF3576) compare
Ga0059261_0990 -1.2 -9.8 methionine synthase (B12-dependent) (EC 2.1.1.13) compare
Ga0059261_0131 -1.2 -4.8 hypothetical protein compare
Ga0059261_3556 -1.2 -2.7 transcriptional regulator, TetR family compare
Ga0059261_3748 -1.2 -3.0 ribosomal protein L15, bacterial/organelle compare
Ga0059261_0136 -1.1 -3.3 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_0650 -1.1 -1.8 Negative regulator of beta-lactamase expression compare
Ga0059261_1871 -1.1 -7.0 ABC transport permease subunit compare
Ga0059261_2180 -1.1 -6.1 methionine-R-sulfoxide reductase compare
Ga0059261_1600 -1.1 -2.4 Domain of unknown function (DUF4167) compare
Ga0059261_3130 -1.1 -5.9 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_2181 -1.1 -7.5 penicillin-binding protein, 1A family compare
Ga0059261_3339 -1.1 -5.1 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_1573 -1.1 -4.3 hypothetical protein compare
Ga0059261_1312 -1.1 -3.9 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_4008 -1.0 -6.3 Alpha/beta hydrolase family compare
Ga0059261_3620 -1.0 -2.9 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_3502 -1.0 -2.4 Fatty acid desaturase compare
Ga0059261_0647 -1.0 -4.3 tRNA pseudouridine(38-40) synthase compare
Ga0059261_0197 -1.0 -1.6 hypothetical protein compare
Ga0059261_1026 -1.0 -2.9 DNA repair protein RecN compare
Ga0059261_2034 -1.0 -6.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_0089 -1.0 -4.2 trigger factor compare
Ga0059261_1399 -1.0 -6.8 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) compare
Ga0059261_2700 -1.0 -6.9 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_3114 -0.9 -5.4 hypothetical protein compare
Ga0059261_3100 -0.9 -6.3 Sugar transferases involved in lipopolysaccharide synthesis compare
Ga0059261_1846 -0.9 -5.4 Xaa-Pro aminopeptidase compare
Ga0059261_1360 -0.9 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_0350 -0.9 -4.9 Bacterial SH3 domain compare
Ga0059261_3190 -0.9 -6.9 3-isopropylmalate dehydrogenase compare
Ga0059261_1293 -0.9 -6.1 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_1017 -0.9 -3.5 tRNA-guanine transglycosylase compare
Ga0059261_3125 -0.9 -1.6 Imidazoleglycerol-phosphate synthase compare
Ga0059261_3569 -0.9 -2.5 chaperone protein DnaJ compare
Ga0059261_1870 -0.9 -4.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_3577 -0.9 -3.9 Uncharacterized conserved protein compare
Ga0059261_2000 -0.9 -4.5 Uncharacterized conserved protein compare
Ga0059261_3127 -0.9 -3.8 hypothetical protein compare
Ga0059261_2458 -0.9 -4.6 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_0623 -0.8 -2.5 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_0304 -0.8 -1.4 Bacterioferritin-associated ferredoxin compare
Ga0059261_1075 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_4139 -0.8 -1.8 hypothetical protein compare
Ga0059261_0154 -0.8 -5.8 Predicted permeases compare
Ga0059261_2048 -0.8 -5.0 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_1453 -0.8 -4.8 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs compare
Ga0059261_0725 -0.8 -2.0 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_3599 -0.8 -4.4 ADP-ribose pyrophosphatase compare
Ga0059261_2764 -0.8 -2.9 Site-specific recombinase XerD compare
Ga0059261_1011 -0.8 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Ga0059261_1398 -0.8 -4.1 Sulfite oxidase and related enzymes compare
Ga0059261_2231 -0.8 -3.4 Uncharacterized conserved protein compare
Ga0059261_4022 -0.8 -5.0 Signal transduction histidine kinase compare
Ga0059261_1986 -0.8 -4.2 Glycine/serine hydroxymethyltransferase compare
Ga0059261_0161 -0.8 -2.1 molybdopterin converting factor, subunit 1, non-archaeal compare
Ga0059261_3605 -0.8 -2.2 tRNA compare
Ga0059261_0622 -0.8 -4.4 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Ga0059261_0387 -0.8 -2.5 Type IV secretory pathway, TrbD component compare
Ga0059261_1479 -0.8 -5.2 Lactate dehydrogenase and related dehydrogenases compare
Ga0059261_1306 -0.8 -5.6 methionine-S-sulfoxide reductase compare
Ga0059261_1869 -0.8 -3.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_3129 -0.8 -4.8 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_3882 -0.8 -2.4 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_2663 -0.8 -1.3 Domain of unknown function (DUF718) compare
Ga0059261_4013 -0.8 -1.8 hypothetical protein compare
Ga0059261_1417 -0.8 -2.2 transcriptional regulator, XRE family compare
Ga0059261_3695 -0.7 -4.8 Predicted metal-dependent hydrolase with the TIM-barrel fold compare
Ga0059261_0249 -0.7 -5.2 Superfamily I DNA and RNA helicases compare
Ga0059261_2191 -0.7 -4.1 ribosomal subunit interface protein compare
Ga0059261_4208 -0.7 -4.4 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Ga0059261_1335 -0.7 -2.2 Predicted ATPase compare
Ga0059261_3186 -0.7 -4.9 Excinuclease ABC subunit C compare
Ga0059261_1262 -0.7 -5.2 cobaltochelatase CobS subunit (EC 6.6.1.2) compare
Ga0059261_3595 -0.7 -2.8 Site-specific recombinase XerD compare
Ga0059261_1057 -0.7 -2.7 hypothetical protein compare
Ga0059261_0084 -0.7 -1.9 hypothetical protein compare
Ga0059261_2003 -0.7 -3.7 Cytochrome oxidase assembly factor compare
Ga0059261_3786 -0.7 -3.3 Malic enzyme compare
Ga0059261_3119 -0.7 -2.1 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3340 -0.7 -3.9 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Ga0059261_1386 -0.7 -3.5 7-cyano-7-deazaguanine reductase compare
Ga0059261_1260 -0.7 -4.3 cobaltochelatase CobT subunit (EC 6.6.1.2) compare
Ga0059261_2145 -0.7 -2.9 ribosome-binding factor A compare
Ga0059261_1181 -0.7 -2.1 hypothetical protein compare
Ga0059261_3128 -0.7 -5.1 capsular exopolysaccharide family compare
Ga0059261_3105 -0.7 -4.7 Methyltransferase domain compare
Ga0059261_0069 -0.7 -3.0 tRNA dimethylallyltransferase compare
Ga0059261_2391 -0.7 -1.3 Helix-turn-helix domain compare
Ga0059261_4001 -0.7 -3.4 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_0624 -0.7 -3.8 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
Ga0059261_2294 -0.6 -0.9 Cell division protein compare
Ga0059261_0933 -0.6 -3.8 Molybdopterin biosynthesis enzyme compare
Ga0059261_1768 -0.6 -1.5 Sigma-70 region 2 compare
Ga0059261_0930 -0.6 -2.9 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Ga0059261_0720 -0.6 -1.9 Predicted small integral membrane protein compare
Ga0059261_3121 -0.6 -3.3 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_2701 -0.6 -4.6 Protein-disulfide isomerase compare
Ga0059261_2215 -0.6 -1.5 Thiamine monophosphate synthase compare
Ga0059261_4007 -0.6 -1.4 Transcriptional regulators compare
Ga0059261_0620 -0.6 -5.3 Outer membrane cobalamin receptor protein compare
Ga0059261_3506 -0.6 -1.3 Predicted permeases compare
Ga0059261_0494 -0.6 -1.3 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_3807 -0.6 -3.0 Uncharacterized conserved protein compare
Ga0059261_1612 -0.6 -0.7 hypothetical protein compare
Ga0059261_1311 -0.6 -2.4 Nitroreductase compare
Ga0059261_2481 -0.6 -2.9 Ppx/GppA phosphatase family compare
Ga0059261_1080 -0.6 -1.8 Chemotaxis signal transduction protein compare
Ga0059261_3255 -0.6 -3.8 hypothetical protein compare
Ga0059261_3909 -0.6 -1.6 Predicted membrane protein compare
Ga0059261_0121 -0.6 -1.4 Sporulation related domain compare
Ga0059261_1380 -0.6 -4.2 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_3124 -0.6 -2.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_3189 -0.6 -3.4 DNA replication and repair protein RecO compare
Ga0059261_0692 -0.6 -3.3 Predicted secreted protein compare
Ga0059261_4224 -0.6 -1.2 hypothetical protein compare
Ga0059261_0674 -0.6 -4.5 excinuclease ABC, A subunit compare
Ga0059261_3520 -0.6 -3.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_3433 -0.6 -2.4 ATPases involved in chromosome partitioning compare
Ga0059261_3209 -0.5 -4.1 queuosine biosynthesis protein QueC compare
Ga0059261_3519 -0.5 -4.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Ga0059261_0879 -0.5 -3.4 ribosomal RNA small subunit methyltransferase A compare
Ga0059261_0159 -0.5 -3.1 Transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium Chlorite in Sphingomonas koreensis DSMZ 15582

For stress Sodium Chlorite across organisms