Experiment set4IT003 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

epiphytic; Lima bean

200 most detrimental genes:

  gene name fitness t score description  
Psyr_1713 +2.3 2.0 hypothetical protein compare
Psyr_4115 +1.9 4.2 phosphoheptose isomerase compare
Psyr_1138 +1.9 1.4 GCN5-related N-acetyltransferase compare
Psyr_1084 +1.8 1.5 Histone-like bacterial DNA-binding protein compare
Psyr_1895 +1.8 2.4 conserved hypothetical protein compare
Psyr_4734 +1.7 1.9 transcriptional regulator, TetR family compare
Psyr_2444 +1.7 3.1 Response regulator receiver compare
Psyr_3903 +1.6 3.1 Conserved hypothetical protein 11 compare
Psyr_5027 +1.6 1.6 bacterial nucleoid protein HU alpha subunit compare
Psyr_1357 +1.5 2.1 RNase HII compare
Psyr_0404 +1.5 1.9 Fimbrial assembly compare
Psyr_1306 +1.5 2.6 CheW-like protein compare
Psyr_5072 +1.5 1.2 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2594 +1.4 2.3 unknown conserved protein in bacilli compare
Psyr_4331 +1.4 2.0 galactose 1-dehydrogenase compare
Psyr_2213 +1.4 2.4 transcriptional regulator, AraC family compare
Psyr_4658 +1.4 1.5 CDS compare
Psyr_RNA61 +1.4 1.1 tRNA-Gly compare
Psyr_1909 +1.3 1.5 conserved hypothetical protein compare
Psyr_2818 +1.3 3.0 hypothetical protein compare
Psyr_0376 +1.3 1.4 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_2563 +1.3 1.0 HAD-superfamily hydrolase, subfamily IIA compare
Psyr_3601 +1.3 4.4 conserved hypothetical protein compare
Psyr_0828 +1.3 1.7 ketopantoate hydroxymethyltransferase compare
Psyr_3228 +1.3 2.5 Glycosyl transferase, group 1 compare
Psyr_RNA63 +1.3 1.2 tRNA-Met compare
Psyr_3592 +1.3 1.5 Nitroreductase compare
Psyr_1078 +1.2 2.1 Protein of unknown function DUF24 compare
Psyr_2196 +1.2 2.8 Urease accessory protein UreG compare
Psyr_1999 +1.2 1.8 OmpA/MotB compare
Psyr_0817 +1.2 1.7 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_2984 +1.2 2.6 conserved hypothetical protein compare
Psyr_0580 +1.2 1.2 23S rRNA Gm-2251 2'-O-methyltransferase compare
Psyr_0699 +1.2 1.7 CDS compare
Psyr_0426 +1.1 1.6 lipoprotein, putative compare
Psyr_0636 +1.1 1.8 LrgA compare
Psyr_4071 +1.1 1.8 Phosphoesterase, PA-phosphatase related protein compare
Psyr_3727 +1.1 2.3 conserved hypothetical protein compare
Psyr_1807 +1.1 2.5 Allantoicase compare
Psyr_2092 +1.1 1.9 Protein of unknown function 1935 compare
Psyr_1222 +1.1 1.4 CDS compare
Psyr_4564 +1.1 3.7 Biotin--acetyl-CoA-carboxylase ligase compare
Psyr_2221 +1.1 1.0 sarcosine oxidase, gamma subunit compare
Psyr_2403 +1.1 2.1 Protein of unknown function DUF1330 compare
Psyr_2829 +1.1 1.1 conserved hypothetical protein compare
Psyr_3154 +1.0 1.7 transcriptional regulator, TetR family compare
Psyr_0824 +1.0 2.2 acetyl-CoA acetyltransferase compare
Psyr_4189 +1.0 1.0 Protein of unknown function UPF0044 compare
Psyr_2297 +1.0 1.5 glucose 1-dehydrogenase compare
Psyr_0718 +1.0 2.3 type IV pilus assembly protein PilX compare
Psyr_2710 +1.0 1.3 transcriptional regulator, GntR family compare
Psyr_1830 +1.0 2.6 ABC transporter, transmembrane region:ABC transporter compare
Psyr_4479 +1.0 3.1 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase compare
Psyr_3195 +1.0 2.7 NolW-like protein compare
Psyr_0549 +1.0 1.4 Metallophosphoesterase compare
Psyr_2544 +1.0 3.3 Alkylhydroperoxidase AhpD core:Uncharacterized peroxidase-related protein compare
Psyr_0391 +1.0 1.8 Poly granule associated compare
Psyr_3461 +1.0 5.8 Helix-turn-helix, Fis-type compare
Psyr_0187 +1.0 1.2 conserved hypothetical protein compare
Psyr_3296 +1.0 1.3 MOSC:MOSC, N-terminal beta barrel compare
Psyr_1714 +1.0 2.3 exonuclease SbcC compare
Psyr_3698 +1.0 1.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_1316 +1.0 3.8 OmpA/MotB compare
Psyr_4593 +0.9 0.8 sigma factor domain protein compare
Psyr_RNA53 +0.9 1.2 tRNA-Arg compare
Psyr_0545 +0.9 1.6 Permease for cytosine/purines, uracil, thiamine, allantoin compare
Psyr_4175 +0.9 2.2 Transport-associated protein compare
Psyr_0772 +0.9 1.4 Protein of unknown function DUF1355 compare
Psyr_2144 +0.9 1.2 conserved hypothetical protein compare
Psyr_3967 +0.9 2.4 membrane protein TctB, putative compare
Psyr_0645 +0.9 1.2 3-ketoacyl-CoA thiolase compare
Psyr_3480 +0.9 2.6 Flagellar basal-body rod protein FlgC compare
Psyr_2026 +0.9 1.4 conserved hypothetical protein compare
Psyr_2704 +0.9 2.5 UDP-galactose 4-epimerase compare
Psyr_3995 +0.9 1.9 Helix-turn-helix, Fis-type compare
Psyr_2202 +0.9 1.6 ABC transporter compare
Psyr_3609 +0.9 1.5 conserved hypothetical protein compare
Psyr_3105 +0.9 3.3 phosphate ABC transporter membrane protein 1, PhoT family compare
Psyr_3177 +0.9 1.9 Recombination protein MgsA compare
Psyr_3511 +0.9 1.0 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_4670 +0.9 2.9 coenzyme PQQ synthesis protein A compare
Psyr_0900 +0.9 1.8 TRAP dicarboxylate transporter- DctP subunit compare
Psyr_0726 +0.9 2.6 ribosomal large subunit pseudouridine synthase D compare
Psyr_4744 +0.9 0.6 hypothetical protein compare
Psyr_1997 +0.9 1.5 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3212 +0.9 2.9 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3542 +0.9 2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_5029 +0.9 1.9 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_4502 +0.9 3.4 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
Psyr_0962 +0.8 2.2 transcriptional regulator, MerR family compare
Psyr_2695 +0.8 1.4 conserved hypothetical protein compare
Psyr_3149 +0.8 2.3 General secretion pathway protein G compare
Psyr_2610 +0.8 2.4 Chlorinating enzyme compare
Psyr_2970 +0.8 1.3 TPR repeat protein:TPR repeat protein compare
Psyr_3210 +0.8 2.4 Protein of unknown function UPF0118 compare
Psyr_1225 +0.8 1.3 hypothetical protein compare
Psyr_1366 +0.8 3.3 transcriptional regulator, LysR family compare
Psyr_2852 +0.8 0.9 conserved hypothetical protein compare
Psyr_3705 +0.8 2.1 conserved hypothetical protein compare
Psyr_2422 +0.8 1.8 transcriptional regulator, LysR family compare
Psyr_2327 +0.8 2.0 GTP cyclohydrolase subunit MoaA compare
Psyr_4597 +0.8 1.9 conserved hypothetical protein compare
Psyr_3020 +0.8 1.4 precorrin-4 C11-methyltransferase compare
Psyr_2545 +0.8 2.3 Metallophosphoesterase compare
Psyr_0194 +0.8 2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_2605 +0.8 1.9 transposase, putative compare
Psyr_1211 +0.8 1.8 type III secretion protein HrpP compare
Psyr_2419 +0.8 1.6 Protein of unknown function DUF480 compare
Psyr_0649 +0.8 2.6 transcriptional regulator, AraC family compare
Psyr_2048 +0.8 2.7 Haloacid dehalogenase-like hydrolase:E1-E2 ATPase-associated region compare
Psyr_1640 +0.8 2.0 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 compare
Psyr_4942 +0.8 1.5 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_3624 +0.8 1.4 transcriptional regulator, LysR family compare
Psyr_1766 +0.8 1.7 conserved hypothetical protein compare
Psyr_4804 +0.8 0.7 conserved hypothetical protein compare
Psyr_3455 +0.8 2.5 Flagellar assembly protein FliH compare
Psyr_2740 +0.8 2.3 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_3220 +0.8 2.5 Aminotransferase, class V compare
Psyr_2782 +0.8 2.3 hypothetical protein compare
Psyr_1467 +0.8 3.0 conserved hypothetical protein compare
Psyr_3507 +0.8 2.1 membrane protein, putative compare
Psyr_2505 +0.8 2.3 amino acid ABC transporter membrane protein 2, PAAT family compare
Psyr_0446 +0.8 1.8 Malonate decarboxylase gamma subunit compare
Psyr_3825 +0.8 2.6 transcriptional regulator, LysR family compare
Psyr_4395 +0.8 1.6 type II secretion system protein compare
Psyr_1279 +0.8 3.0 CBS:Transporter-associated region compare
Psyr_2512 +0.8 1.3 conserved hypothetical protein compare
Psyr_0756 +0.8 3.3 indole-3-glycerol phosphate synthase compare
Psyr_3284 +0.7 1.7 SOS cell division inhibitor SulA compare
Psyr_1509 +0.7 1.7 PilM protein, putative compare
Psyr_0285 +0.7 1.5 Cytochrome c oxidase assembly protein CtaG/Cox11 compare
Psyr_3447 +0.7 2.0 Flagellar motor switch protein FliM compare
Psyr_1966 +0.7 1.4 Peptidase M19, renal dipeptidase compare
Psyr_4920 +0.7 1.3 conserved hypothetical bacteriophage protein compare
Psyr_0437 +0.7 1.0 acyl carrier protein, putative compare
Psyr_3378 +0.7 2.3 Fusaric acid resistance protein conserved region compare
Psyr_1694 +0.7 1.0 Rhomboid-like protein compare
Psyr_1803 +0.7 1.7 Protein of unknown function DUF808 compare
Psyr_2435 +0.7 2.4 Xylulokinase compare
Psyr_4604 +0.7 0.8 hypothetical protein compare
Psyr_4466 +0.7 1.6 Thioredoxin compare
Psyr_2468 +0.7 2.0 Enoyl-CoA hydratase/isomerase compare
Psyr_3718 +0.7 1.7 hypothetical protein compare
Psyr_3723 +0.7 0.8 CDS compare
Psyr_1273 +0.7 1.2 NUDIX hydrolase compare
Psyr_0375 +0.7 2.7 prolyl aminopeptidase, Serine peptidase, MEROPS family S33 compare
Psyr_1451 +0.7 0.9 hypothetical protein compare
Psyr_3037 +0.7 2.3 membrane protein, putative compare
Psyr_RNA78 +0.7 1.4 5S ribosomal RNA compare
Psyr_0972 +0.7 1.3 conserved hypothetical protein compare
Psyr_3906 +0.7 0.7 regulatory protein, DeoR compare
Psyr_1390 +0.7 2.0 RNA-binding S4 compare
Psyr_1324 +0.7 1.9 conserved hypothetical protein compare
Psyr_2051 +0.7 1.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3623 +0.7 0.6 Protein of unknown function DUF1127 compare
Psyr_4861 +0.7 1.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3437 +0.7 3.7 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
Psyr_3608 +0.7 2.1 Pirin, N-terminal compare
Psyr_1309 +0.7 2.4 response regulator receiver modulated diguanylate cyclase compare
Psyr_0662 +0.7 2.5 2OG-Fe(II) oxygenase superfamily compare
Psyr_3056 +0.7 2.2 Amidase, hydantoinase/carbamoylase compare
Psyr_3900 +0.7 1.6 conserved hypothetical protein compare
Psyr_4802 +0.7 1.1 Secretion protein HlyD compare
Psyr_1329 +0.7 1.1 conserved hypothetical protein compare
Psyr_2806 +0.7 1.4 Bacteriophage Lambda NinG compare
Psyr_4212 +0.7 2.0 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_1448 +0.7 1.9 conserved hypothetical protein compare
Psyr_3927 +0.7 2.2 Siderophore-interacting protein compare
Psyr_3397 +0.7 1.7 transcriptional regulator, LysR family compare
Psyr_3540 +0.7 1.2 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_1676 +0.7 2.3 1-aminocyclopropane-1-carboxylate deaminase, putative compare
Psyr_2866 +0.7 2.6 Secretion protein HlyD compare
Psyr_0884 +0.7 2.5 conserved hypothetical protein compare
Psyr_3938 +0.7 0.8 Amidase compare
Psyr_2029 +0.7 1.6 Protein of unknown function UPF0118 compare
Psyr_3036 +0.7 1.1 transcriptional regulator, TetR family compare
Psyr_4404 +0.7 1.4 tRNA-U20-dihydrouridine synthase compare
Psyr_1887 +0.7 1.4 CDS compare
Psyr_3702 +0.7 2.2 Arsenate reductase compare
Psyr_0462 +0.7 2.3 Hydroxypyruvate isomerase compare
Psyr_1490 +0.7 1.4 conserved domain protein compare
Psyr_2981 +0.7 1.1 hypothetical protein compare
Psyr_2283 +0.7 2.4 Secretion protein HlyD compare
Psyr_0458 +0.7 2.2 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal compare
Psyr_2255 +0.7 1.6 ABC transporter compare
Psyr_1350 +0.6 2.0 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_5071 +0.6 1.0 conserved hypothetical protein compare
Psyr_1458 +0.6 0.6 hypothetical protein compare
Psyr_1892 +0.6 2.4 Short-chain dehydrogenase/reductase SDR compare
Psyr_3992 +0.6 2.2 Protein of unknown function DUF477 compare
Psyr_4989 +0.6 1.5 hypothetical protein compare
Psyr_1872 +0.6 1.3 conserved hypothetical protein compare
Psyr_3188 +0.6 1.2 transcriptional regulator, LysR family compare
Psyr_0683 +0.6 2.6 NUDIX hydrolase compare
Psyr_1989 +0.6 1.7 galactonate dehydratase compare
Psyr_1780 +0.6 1.0 transcriptional regulator, TetR family compare
Psyr_1820 +0.6 1.6 conserved hypothetical protein compare
Psyr_2433 +0.6 1.1 conserved hypothetical protein compare
Psyr_4810 +0.6 1.9 sodium/proton antiporter, CPA1 family compare
Psyr_0048 +0.6 1.1 conserved hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For in planta epiphytic in Pseudomonas syringae pv. syringae B728a ΔmexB

For in planta epiphytic across organisms