Experiment set4H33 for Shewanella oneidensis MR-1

Compare to:

Cytidine carbon source replicate 2

200 most detrimental genes:

  gene name fitness t score description  
SO2490 +4.5 16.5 transcriptional regulator, RpiR family (NCBI ptt file) compare
SO1665 galU +4.0 23.8 UTP-glucose-1-phosphate uridylyltransferase (NCBI ptt file) compare
SO1784 feoB +3.8 11.5 ferrous iron transport protein B (NCBI ptt file) compare
SO0298 gmhA +3.6 18.3 phosphoheptose isomerase (NCBI ptt file) compare
SO3799 asnC +3.4 19.2 regulatory protein AsnC (NCBI ptt file) compare
SO4678 +3.2 24.9 heptosyl transferase, glycosyltransferase family 9 protein (NCBI ptt file) compare
SO2537 +3.2 23.0 sodium/hydrogen exchanger family protein (NCBI ptt file) compare
SO3227 fliG +3.1 17.9 flagellar motor switch protein FliG (NCBI ptt file) compare
SO3745 rfaE +3.0 24.4 ADP-heptose synthase (NCBI ptt file) compare
SO3228 fliF +3.0 21.7 flagellar M-ring protein FliF (NCBI ptt file) compare
SO1210.1 +2.9 13.6 hypothetical peptide chain release factor 3 (NCBI ptt file) compare
SO_1211 +2.9 17.0 no description compare
SO_t008 tRNA-Thr-1 +2.8 5.4 tRNA-Thr (RefSeq) compare
SO4728 +2.8 13.3 conserved hypothetical protein (NCBI ptt file) compare
SO0229 tufA +2.7 3.7 translation elongation factor Tu (NCBI ptt file) compare
SO1383 +2.7 17.7 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO3363 +2.7 20.5 transcriptional regulator, LysR family (NCBI ptt file) compare
SO3250 flgB +2.5 10.5 flagellar basal-body rod protein FlgB (NCBI ptt file) compare
SO2248 sdaA +2.5 8.6 L-serine dehydratase 1 (NCBI ptt file) compare
SO3215 flhB +2.5 12.7 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SO3249 flgC +2.5 8.5 flagellar basal-body rod protein FlgC (NCBI ptt file) compare
SO3196 +2.4 14.5 response regulator (NCBI ptt file) compare
SO2347 gapA-3 +2.4 11.1 glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file) compare
SO1327 +2.3 4.9 sensor histidine kinase-related protein (NCBI ptt file) compare
SO1878 +2.3 6.7 glycine cleavage system transcriptional repressor, putative (NCBI ptt file) compare
SO0217 tufB +2.3 4.8 translation elongation factor Tu (NCBI ptt file) compare
SO3229 fliE +2.3 6.8 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO_2754 +2.3 11.0 no description compare
SO2851 +2.2 11.6 histidinol phosphatase domain protein (NCBI ptt file) compare
SO3232 flrA +2.2 14.7 flagellar regulatory protein A (NCBI ptt file) compare
SO4680 +2.2 16.8 conserved hypothetical protein (NCBI ptt file) compare
SO3258 +2.2 16.6 conserved hypothetical protein (NCBI ptt file) compare
SO0163 hslO +2.1 13.7 chaperonin HslO (NCBI ptt file) compare
SO0359 spoT +2.1 6.3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (NCBI ptt file) compare
SO3244 flgG +2.1 12.9 flagellar basal-body rod protein FlgG (NCBI ptt file) compare
SO3417 slyD +2.1 8.7 peptidyl-prolyl cis-trans isomerase SlyD (NCBI ptt file) compare
SO3221 fliM +2.1 8.7 flagellar motor switch protein FliM (NCBI ptt file) compare
SO3217 fliQ +2.1 7.9 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO3224 fliJ +2.1 8.2 flagellar protein FliJ (NCBI ptt file) compare
SO2738 bioC +2.0 2.7 biotin synthesis protein BioC (NCBI ptt file) compare
SO_2937 +2.0 13.8 no description compare
SO1215 +2.0 11.6 outer membrane protein OmpK, putative (NCBI ptt file) compare
SO3210 fliA +2.0 11.5 RNA polymerase sigma-27 factor (NCBI ptt file) compare
SO3216 fliR +2.0 13.9 flagellar biosynthetic protein FliR (NCBI ptt file) compare
SO3225 fliI +2.0 13.7 flagellum-specific ATP synthase FliI (NCBI ptt file) compare
SO4248 radC +1.9 7.1 DNA repair protein RadC (NCBI ptt file) compare
SO3220 fliN +1.9 6.4 flagellar motor switch protein FliN (NCBI ptt file) compare
SO3218 fliP +1.9 8.8 flagellar biosynthetic protein FliP (NCBI ptt file) compare
SO0947 srmB +1.8 14.5 ATP-dependent RNA helicase SrmB (NCBI ptt file) compare
SO3268 +1.8 14.1 alpha amylase domain protein (NCBI ptt file) compare
SO2753.2 +1.8 5.3 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO2645 +1.8 13.9 conserved hypothetical protein (NCBI ptt file) compare
SO3242 flgI +1.8 12.2 flagellar P-ring protein FlgI (NCBI ptt file) compare
SO3245 flgF +1.8 11.1 flagellar basal-body rod protein FlgF (NCBI ptt file) compare
SO3237 +1.8 4.9 flagellin (NCBI ptt file) compare
SO3419 trpR +1.8 10.8 trp operon repressor (NCBI ptt file) compare
SO3253 +1.8 14.2 flagellar basal-body P-ring formation protein FlgA, putative (NCBI ptt file) compare
SO3241 flgJ +1.8 11.1 flagellar protein FlgJ (NCBI ptt file) compare
SO3243 flgH +1.8 13.6 flagellar L-ring protein FlgH (NCBI ptt file) compare
SO3219 fliO +1.8 6.1 flagellar protein FliO (NCBI ptt file) compare
SO_A0174 +1.7 6.2 hypothetical protein (NCBI) compare
SO1803 sapC +1.7 3.1 peptide ABC transporter, permease protein (NCBI ptt file) compare
SO2336 pgm +1.7 3.8 phosphoglucomutase, alpha-D-glucose phosphate-specific (NCBI ptt file) compare
SO3233 fliS +1.7 8.7 flagellar protein FliS (NCBI ptt file) compare
SO2739.1 +1.7 2.4 hypothetical protein (NCBI ptt file) compare
SO0577 +1.7 12.2 sensory box histidine kinase/response regulator (NCBI ptt file) compare
SO3226 fliH +1.7 9.7 flagellar assembly protein FliH (NCBI ptt file) compare
SO3248 flgD +1.7 5.0 basal-body rod modification protein FlgD (NCBI ptt file) compare
SO1530 pomB +1.7 7.4 sodium-driven polar flagellar protein PomB (NCBI ptt file) compare
SO0162 pckA +1.7 12.9 phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) compare
SO3265 +1.6 12.3 conserved hypothetical protein (NCBI ptt file) compare
SO4094 cafA +1.6 8.1 ribonuclease G (NCBI ptt file) compare
SO3270 +1.6 10.3 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3262 ilvB +1.6 11.6 acetolactate synthase isozyme I, large subunit (NCBI ptt file) compare
SO1301 pyrB +1.6 11.9 aspartate carbamoyltransferase (NCBI ptt file) compare
SO1804 sapB +1.6 5.1 peptide ABC transporter, permease protein (NCBI ptt file) compare
SO2742 +1.6 13.1 sensor histidine kinase/response regulator (NCBI ptt file) compare
SO4351 +1.6 12.4 CBS domain protein (NCBI ptt file) compare
SO3787 +1.6 6.2 hypothetical protein (NCBI ptt file) compare
SO1770 +1.6 11.2 glycerate kinase, putative (NCBI ptt file) compare
SO1664 galE +1.6 11.9 UDP-glucose 4-epimerase (NCBI ptt file) compare
SO2014 +1.6 3.8 conserved hypothetical protein TIGR00103 (NCBI ptt file) compare
SO3213 flhA +1.6 10.3 flagellar biosynthesis protein FlhA (NCBI ptt file) compare
SO3770 +1.6 1.9 conserved hypothetical protein TIGR00153 (NCBI ptt file) compare
SO2108 mdoH +1.6 8.1 periplasmic glucans biosynthesis protein MdoH (NCBI ptt file) compare
SO3194.1 +1.5 11.2 hypothetical peptide transporter (NCBI ptt file) compare
SO4679 +1.5 6.3 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO0606 hflC +1.5 4.2 hflC protein (NCBI ptt file) compare
SO1818 +1.5 9.7 conserved hypothetical protein (NCBI ptt file) compare
SO2237 ptsI +1.5 5.4 phosphoenolpyruvate-protein phosphotransferase (NCBI ptt file) compare
SO3988 arcA +1.5 3.5 aerobic respiration control protein ArcA (NCBI ptt file) compare
SO3247 flgE +1.5 9.5 flagellar hook protein FlgE (NCBI ptt file) compare
SO2491 pykA +1.5 3.5 pyruvate kinase II (NCBI ptt file) compare
SO2604.1 +1.4 5.3 conserved hypothetical protein (NCBI ptt file) compare
SO2648 +1.4 9.3 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2088 +1.4 4.5 lipid A biosynthesis acyltransferase, putative (NCBI ptt file) compare
SO0691 +1.4 5.9 hypothetical protein (NCBI ptt file) compare
SO3936 motX +1.4 6.2 sodium-type flagellar protein MotX (NCBI ptt file) compare
SO0605 hflK +1.4 3.9 hflK protein (NCBI ptt file) compare
SO4687 ugd +1.4 11.4 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO3269 +1.4 11.4 cytidylyltransferase domain protein (NCBI ptt file) compare
SOA0011 +1.4 4.9 conserved hypothetical protein (NCBI ptt file) compare
SO2557 +1.4 7.5 conserved hypothetical protein (NCBI ptt file) compare
SO3562 +1.4 8.1 proton/glutamate symporter, putative (NCBI ptt file) compare
SO4686 +1.4 9.7 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO4462 +1.4 8.3 hypothetical protein (NCBI ptt file) compare
SO_2605 +1.4 5.2 no description compare
SO2339 +1.3 9.3 alpha keto acid dehydrogenase complex, E1 component, alpha subunit (NCBI ptt file) compare
SO0393 fis +1.3 2.7 DNA-binding protein Fis (NCBI ptt file) compare
SO1388 +1.3 10.1 aminopeptidase P, putative (NCBI ptt file) compare
SO1805 sapA +1.3 4.9 peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) compare
SO2606 +1.3 9.2 PqiB family protein (NCBI ptt file) compare
SO4118 +1.3 8.9 malate oxidoreductase, putative (NCBI ptt file) compare
SO3263 +1.3 7.0 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) compare
SO3223 fliK +1.3 7.5 flagellar hook-length control protein FliK (NCBI ptt file) compare
SO3261 +1.3 7.0 polysaccharide biosynthesis related-protein (NCBI ptt file) compare
SO0051 +1.2 3.3 hypothetical protein (NCBI ptt file) compare
SO2340 +1.2 9.4 alpha keto acid dehydrogenase complex, E1 component, beta subunit (NCBI ptt file) compare
SO_A0009 +1.2 6.2 hypothetical protein (NCBI) compare
SO3195 +1.2 3.8 hypothetical peptide transporter (NCBI ptt file) compare
SO1333 +1.2 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO_2304 +1.2 6.2 no description compare
SO1796 lon +1.2 5.3 ATP-dependent protease La (NCBI ptt file) compare
SO4057 metJ +1.2 4.6 met repressor (NCBI ptt file) compare
SOA0002 +1.2 12.0 type II restriction-modification system activator, putative (NCBI ptt file) compare
SO0084 +1.2 7.8 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file) compare
SO1938 cobB +1.2 6.4 cobB protein (NCBI ptt file) compare
SO4095 maf +1.2 4.2 maf protein (NCBI ptt file) compare
SO3172 +1.2 2.8 galactosyl transferase (NCBI ptt file) compare
SO2832 +1.2 5.4 conserved hypothetical protein (NCBI ptt file) compare
SO_A0007 +1.2 7.6 hypothetical protein (NCBI) compare
SO4693 +1.2 7.6 multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) compare
SO4034 deaD +1.2 5.1 ATP-dependent RNA helicase DeaD (NCBI ptt file) compare
SO4718 +1.2 6.4 sigma-54 dependent response regulator (NCBI ptt file) compare
SO0394 +1.1 5.8 conserved hypothetical protein (NCBI ptt file) compare
SO3943 degS +1.1 2.3 protease DegS (NCBI ptt file) compare
SO3954 +1.1 5.6 ABC transporter, ATP-binding protein, putative (NCBI ptt file) compare
SOA0172 +1.1 5.7 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO1902 gnd +1.1 8.4 6-phosphogluconate dehydrogenase, decarboxylating (NCBI ptt file) compare
SOA0012 umuC +1.1 7.5 umuC protein (NCBI ptt file) compare
SO2238 ptsH +1.1 1.9 phosphocarrier protein HPr (NCBI ptt file) compare
SO4702 gor +1.1 8.8 glutathione reductase (NCBI ptt file) compare
SO0360 rpoZ +1.1 1.5 DNA-directed RNA polymerase, omega subunit (NCBI ptt file) compare
SO2111 +1.1 3.4 hypothetical protein (NCBI ptt file) compare
SO3206 cheB-3 +1.1 6.0 protein-glutamate methylesterase CheB (NCBI ptt file) compare
SOA0008 +1.1 6.8 hypothetical protein (NCBI ptt file) compare
SOA0014 +1.1 2.7 hypothetical protein (NCBI ptt file) compare
SO3271 +1.1 4.5 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO2350 aspC-1 +1.1 5.6 aspartate aminotransferase (NCBI ptt file) compare
SO3519 glnB-2 +1.0 2.5 nitrogen regulatory protein P-II 1 (NCBI ptt file) compare
SO2426 +1.0 2.3 DNA-binding response regulator (NCBI ptt file) compare
SO1087 +1.0 8.4 Na+/H+ antiporter family protein (NCBI ptt file) compare
SO1245 +1.0 6.6 membrane protein, putative (NCBI ptt file) compare
SO4305 +1.0 4.9 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file) compare
SO2341 +1.0 7.1 alpha keto acid dehydrogenase complex, E2 component (NCBI ptt file) compare
SO2427 +1.0 6.0 TonB-dependent receptor, putative (NCBI ptt file) compare
SO3222 fliL +1.0 4.8 flagellar protein FliL (NCBI ptt file) compare
SO1819 dinG +1.0 7.3 ATP-dependent helicase DinG (NCBI ptt file) compare
SO1801 sapF +1.0 4.3 peptide ABC transporter, ATP-binding protein (NCBI ptt file) compare
SOA0003 +1.0 9.5 type II restriction endonuclease, putative (NCBI ptt file) compare
SO2804 +1.0 5.6 conserved hypothetical protein (NCBI ptt file) compare
SO2887 dsbB +1.0 4.2 disulfide bond formation protein b (NCBI ptt file) compare
SO2745 +1.0 4.9 glutaredoxin (NCBI ptt file) compare
SO0272 cinA +1.0 6.3 competence/damage-inducible protein CinA (NCBI ptt file) compare
SO3273 +1.0 8.9 conserved hypothetical protein (NCBI ptt file) compare
SO2305 lrp +1.0 4.5 leucine-responsive regulatory protein (NCBI ptt file) compare
SO1393 +0.9 6.5 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3231 flrB +0.9 7.5 flagellar regulatory protein B (NCBI ptt file) compare
SO3771 +0.9 3.6 phosphate transporter, putative (NCBI ptt file) compare
SO3830 +0.9 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO2923 gltS +0.9 4.0 sodium/glutamate symporter (NCBI ptt file) compare
SOA0004 +0.9 6.7 type II DNA modification methyltransferase (NCBI ptt file) compare
SO4055 metL +0.9 7.9 aspartokinase II/homoserine dehydrogenase, methionine-sensitive (NCBI ptt file) compare
SO3239.2 +0.9 3.0 hypothetical flagellar protein (NCBI ptt file) compare
SO1236 +0.9 5.2 xanthine/uracil permease family protein (NCBI ptt file) compare
SO1052 pit +0.9 7.4 low-affinity inorganic phosphate transporter (NCBI ptt file) compare
SO2501 +0.9 5.1 radical activating enzyme (NCBI ptt file) compare
SO4692 +0.9 6.6 AcrB/AcrD/AcrF family protein (NCBI ptt file) compare
SO3558 +0.9 4.2 hypothetical protein (NCBI ptt file) compare
SO2351 +0.9 4.4 conserved hypothetical protein (NCBI ptt file) compare
SO2585 +0.9 3.5 hypothetical protein (NCBI ptt file) compare
SO_2233 +0.8 1.5 no description compare
SO3235 fliD +0.8 4.7 flagellar hook-associated protein FliD (NCBI ptt file) compare
SO3829 +0.8 3.9 conserved hypothetical protein (NCBI ptt file) compare
SO0132 +0.8 3.0 flagellar protein FliL, putative (NCBI ptt file) compare
SO_1527 +0.8 2.4 no description compare
SO3631 hprA +0.8 6.5 glycerate dehydrogenase (NCBI ptt file) compare
SO2638 ldh +0.8 3.7 leucine dehydrogenase (NCBI ptt file) compare
SO3239 flgL +0.8 2.5 flagellar hook-associated protein FlgL (NCBI ptt file) compare
SO3257 +0.8 3.0 conserved hypothetical protein (NCBI ptt file) compare
SO3255 flgN +0.8 3.5 flagellar biosynthetic protein FlgN (NCBI ptt file) compare
SO_A0111 +0.8 0.9 no description compare
SO2398 pyrF +0.8 3.6 orotidine 5`-phosphate decarboxylase (NCBI ptt file) compare
SO2731 mdoG-2 +0.8 5.4 periplasmic glucans biosynthesis protein MdoG (NCBI ptt file) compare
SO0769 argR +0.8 2.2 arginine repressor (NCBI ptt file) compare
SO3234 +0.8 3.4 hypothetical protein (NCBI ptt file) compare
SO2417 +0.8 2.3 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO4697 gst +0.8 5.0 glutathione S-transferase (NCBI ptt file) compare
SO4626 bioH +0.8 4.3 bioH protein (NCBI ptt file) compare
SO3085 +0.8 2.9 conserved domain protein (NCBI ptt file) compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Cytidine in Shewanella oneidensis MR-1

For carbon source Cytidine across organisms