Experiment set47S245 for Pseudomonas putida KT2440

Compare to:

L-tyrosine disodium salt 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
PP_5104 -4.3 -5.9 thiazole synthase compare
PP_4782 -4.0 -2.8 Phosphomethylpyrimidine kinase compare
PP_0540 -4.0 -6.1 conserved inner membrane protein conserved
PP_t12 -3.6 -1.9 tRNA-Thr compare
PP_1418 -3.6 -3.5 putative Tricarboxylate transport protein TctC compare
PP_1872 -3.4 -7.6 glutamate-pyruvate aminotransferase compare
PP_1233 -3.4 -2.3 sulfurtransferase compare
PP_4922 -3.3 -10.6 Phosphomethylpyrimidine synthase compare
PP_1420 -3.2 -5.4 Transcriptional regulatory protein tctD compare
PP_5303 -3.1 -3.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1421 -3.0 -7.0 putative Sensor histidine kinase TctE compare
PP_1231 -2.9 -2.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -2.8 -1.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5313 -2.5 -3.4 DNA-binding protein HU-alpha compare
PP_1079 -2.5 -1.7 Ornithine carbamoyltransferase compare
PP_3590 -2.4 -6.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3790 -2.4 -6.5 diaminopimelate epimerase compare
PP_0063 -2.3 -4.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5075 -2.1 -10.6 glutamate synthase (NADPH) beta subunit compare
PP_0735 -2.1 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_0261 -2.0 -4.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0185 -1.9 -7.6 Positive alginate biosynthesis regulatory protein compare
PP_4060 -1.8 -7.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1417 -1.8 -4.3 putative Tricarboxylate transport protein TctB compare
PP_4937 -1.7 -2.5 toluene tolerance protein compare
PP_1131 -1.7 -3.5 outer membrane lipoprotein compare
PP_2088 -1.7 -2.7 RNA polymerase sigma factor SigX compare
PP_1348 -1.7 -3.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4966 -1.6 -3.1 transcriptional regulator of methionine metabolism compare
PP_0035 -1.6 -2.6 putative bactoprenol-linked glycose transferase compare
PP_4695 -1.6 -7.1 Sensory box histidine kinase compare
PP_0406 -1.6 -2.3 Nucleotidyltransferase family protein compare
PP_1416 -1.6 -5.0 putative Tricarboxylate transport protein TctA compare
PP_4917 -1.5 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2999 -1.5 -1.7 Glyoxalase family protein compare
PP_1224 -1.5 -3.5 periplasmic subunit of the TolQRA transport system compare
PP_1733 -1.5 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_0435 -1.5 -4.1 Peptidase, M23/M37 family compare
PP_5076 -1.5 -10.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_0345 -1.5 -2.9 putative Heptose kinase WapP compare
PP_1142 -1.4 -1.4 conserved protein of unknown function compare
PP_0852 -1.4 -4.2 Transcriptional regulator, Cro/CI family compare
PP_0685 -1.4 -1.9 conserved protein of unknown function compare
PP_1528 -1.4 -1.4 conserved protein of unknown function compare
PP_5035 -1.4 -4.3 Histidine utilization repressor compare
PP_4696 -1.4 -0.9 Nitrogen regulation protein NR(I) compare
PP_5017 -1.4 -1.4 Sec-independent protein translocase protein TatB compare
PP_4379 -1.4 -2.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5475 -1.3 -1.8 conserved protein of unknown function compare
PP_3946 -1.2 -1.3 HTH-type transcriptional repressor NicR compare
PP_4891 -1.2 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4532 -1.2 -1.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2098 -1.2 -5.7 D-alanyl-D-alanine carboxypeptidase compare
PP_1562 -1.2 -1.4 putative Phage terminase, small subunit compare
PP_0593 -1.2 -1.0 putative ribosome-binding factor compare
PP_1088 -1.2 -0.8 Argininosuccinate synthase compare
PP_5139 -1.2 -2.5 cadmium translocating P-type ATPase compare
PP_2145 -1.2 -2.1 beta-N-acetylglucosaminidase compare
PP_4424 -1.2 -1.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4591 -1.2 -2.5 Ribonuclease D compare
PP_0346 -1.2 -5.0 putative Heptose kinase WapQ compare
PP_5202 -1.2 -2.6 putative cell division protein compare
PP_0184 -1.2 -0.8 Argininosuccinate lyase compare
PP_1898 -1.2 -0.8 MotA/TolQ/ExbB proton channel family protein compare
PP_2001 -1.1 -1.1 O-succinylhomoserine sulfhydrylase compare
PP_3527 -1.1 -6.1 Transcriptional regulator, TetR family compare
PP_5114 -1.1 -1.2 putative adenine methyltransferase compare
PP_4699 -1.1 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4008 -1.1 -1.5 ATP-dependent serine protease compare
PP_5090 -1.1 -1.6 putative cell division protein compare
PP_5225 -1.1 -1.5 frataxin compare
PP_4197 -1.1 -5.7 Transcriptional regulator, GntR family compare
PP_1441 -1.1 -3.4 tRNA (cmo5U34)-methyltransferase compare
PP_2592 -1.1 -2.8 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_5000 -1.1 -1.6 peptidase component of the ATP-dependent HslVU protease compare
PP_4143 -1.1 -1.8 conserved protein of unknown function compare
PP_1217 -1.1 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1994 -1.1 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_1426 -1.1 -6.4 L-aspartate oxidase compare
PP_1216 -1.1 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5097 -1.1 -0.7 homoserine O-acetyltransferase compare
PP_1062 -1.0 -2.4 MutT/nudix family protein compare
PP_5110 -1.0 -2.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3539 -1.0 -1.5 putative Transcriptional regulator compare
PP_0507 -1.0 -3.9 putative ABC efflux transporter, ATP-binding protein compare
PP_0001 -1.0 -1.3 probable chromosome-partitioning protein compare
PP_1164 -1.0 -1.8 Transcriptional regulator, LysR family compare
PP_2336 -1.0 -1.9 aconitate hydratase 1 compare
PP_4971 -1.0 -5.2 putative Outer membrane-bound lytic murein transglycolase A compare
PP_2510 -1.0 -0.9 conserved protein of unknown function compare
PP_5580 -1.0 -1.9 protein of unknown function compare
PP_0951 -1.0 -4.8 Ribosome hibernation promoting factor compare
PP_2568 -1.0 -1.2 Ring-cleaving dioxygenase compare
PP_5491 -0.9 -1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_5448 -0.9 -2.7 conserved protein of unknown function compare
PP_1198 -0.9 -1.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0291 -0.9 -1.5 conserved protein of unknown function compare
PP_1364 -0.9 -4.1 conserved exported protein of unknown function compare
PP_4824 -0.9 -3.2 Sensor histidine kinase/response regulator compare
PP_4223 -0.9 -2.0 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1344 -0.9 -1.3 conserved protein of unknown function compare
PP_4045 -0.9 -1.2 conserved protein of unknown function compare
PP_5198 -0.9 -1.6 conserved protein of unknown function compare
PP_5008 -0.9 -1.1 Poly granule-associated protein compare
PP_0995 -0.9 -3.2 conserved membrane protein of unknown function compare
PP_4004 -0.9 -2.6 DNA translocase FtsK compare
PP_4989 -0.9 -2.1 Protein PilJ compare
PP_3102 -0.9 -2.4 conserved protein of unknown function compare
PP_4018 -0.9 -2.2 Acetyltransferase, GNAT family compare
PP_4820 -0.9 -3.1 tRNA-dihydrouridine synthase B compare
PP_4942 -0.8 -1.5 conserved protein of unknown function compare
PP_5145 -0.8 -7.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2650 -0.8 -2.2 putative 4-hydroxybutyrate dehydrogenase compare
PP_0122 -0.8 -2.1 conserved exported protein of unknown function compare
PP_0339 -0.8 -0.6 Pyruvate dehydrogenase E1 component compare
PP_2306 -0.8 -1.7 conserved exported protein of unknown function compare
PP_0135 -0.8 -2.6 conserved exported protein of unknown function compare
PP_0422 -0.8 -0.6 Indole-3-glycerol phosphate synthase compare
PP_5279 -0.8 -1.8 conserved protein of unknown function compare
PP_3825 -0.8 -2.4 conserved protein of unknown function compare
PP_5367 -0.8 -2.8 Transketolase domain protein compare
PP_1215 -0.8 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_2857 -0.8 -1.1 conserved exported protein of unknown function compare
PP_0153 -0.8 -1.7 hypothetical protein compare
PP_2203 -0.8 -1.4 conserved protein of unknown function compare
PP_2784 -0.8 -2.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0506 -0.8 -5.2 putative ABC efflux transporter, permease protein compare
PP_3555 -0.8 -2.8 putative Transmembrane sensor compare
PP_4803 -0.8 -3.0 D-alanyl-D-alanine carboxypeptidase compare
PP_1826 -0.8 -1.6 Hydrolase, isochorismatase family compare
PP_0508 -0.8 -2.0 conserved exported protein of unknown function compare
PP_3245 -0.8 -1.2 conserved protein of unknown function compare
PP_4819 -0.8 -2.3 conserved protein of unknown function compare
PP_1304 -0.8 -2.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5140 -0.8 -1.5 Transcriptional regulator, MerR family compare
PP_4471 -0.8 -1.2 Magnesium transporter compare
PP_5583 -0.8 -1.4 conserved protein of unknown function compare
PP_1346 -0.8 -2.4 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5289 -0.8 -0.5 Acetylglutamate kinase compare
PP_0080 -0.7 -2.7 conserved protein of unknown function compare
PP_4890 -0.7 -0.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4613 -0.7 -4.6 outer membrane ferric citrate porin compare
PP_0629 -0.7 -2.8 conserved membrane protein of unknown function compare
PP_4847 -0.7 -1.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_1419 -0.7 -1.7 tricarboxylate-specific outer membrane porin compare
PP_4879 -0.7 -1.9 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2327 -0.7 -0.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0880 -0.7 -1.7 dipeptide ABC transporter - putative membrane subunit compare
PP_3789 -0.7 -3.9 putative Efflux transporter compare
PP_0872 -0.7 -2.8 Peptide chain release factor 3 compare
PP_1633 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4505 -0.7 -2.7 Sensor histidine kinase compare
PP_4701 -0.7 -0.7 glucose-6-phosphate isomerase compare
PP_5203 -0.7 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_3587 -0.7 -2.4 lipid hydroperoxide peroxidase compare
PP_4136 -0.7 -0.8 Transcriptional regulator, LuxR family compare
PP_2025 -0.7 -1.9 Exonuclease SbcD compare
PP_0878 -0.7 -2.8 dipeptide ABC transporter, binding subunit compare
PP_2028 -0.7 -2.2 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0123 -0.7 -3.8 DNA polymerase I, 5 compare
PP_2773 -0.7 -1.1 conserved protein of unknown function compare
PP_3241 -0.7 -0.9 conserved exported protein of unknown function compare
PP_1568 -0.7 -1.0 conserved protein of unknown function compare
PP_4941 -0.7 -2.1 conserved exported protein of unknown function compare
PP_1473 -0.7 -2.2 conserved protein of unknown function compare
PP_5453 -0.7 -1.3 conserved protein of unknown function compare
PP_3551 -0.7 -1.3 DNA-binding response regulator, LuxR family compare
PP_5328 -0.6 -0.4 putative phosphate transport system permease protein compare
PP_1207 -0.6 -2.0 conserved protein of unknown function compare
PP_2142 -0.6 -1.5 Cell division inhibitor SulA compare
PP_2222 -0.6 -2.0 conserved protein of unknown function compare
PP_2122 -0.6 -1.8 molybdenum cofactor biosynthesis protein B compare
PP_5272 -0.6 -2.6 conserved protein of unknown function compare
PP_5600 -0.6 -1.5 conserved protein of unknown function compare
PP_4988 -0.6 -2.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5168 -0.6 -1.2 sulfate/thiosulfate import ATP-binding protein compare
PP_3726 -0.6 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_3456 -0.6 -3.6 Multidrug resistance protein MexB compare
PP_0410 -0.6 -2.8 DNA-binding response regulator UhpA compare
PP_4387 -0.6 -1.4 conserved exported protein of unknown function compare
PP_1489 -0.6 -1.9 CheW domain protein compare
PP_2403 -0.6 -1.0 Chemotaxis protein CheY compare
PP_5324 -0.6 -1.3 Response regulator compare
PP_5667 -0.6 -1.8 putative microcin B17-like-processing protein, McbC family compare
PP_3036 -0.6 -2.0 conserved protein of unknown function compare
PP_1918 -0.6 -4.4 septation protein compare
PP_5156 -0.6 -2.0 conserved exported protein of unknown function compare
PP_5146 -0.6 -3.0 RNA pyrophosphohydrolase compare
PP_0090 -0.6 -1.8 conserved exported protein of unknown function compare
PP_1317 -0.6 -1.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1255 -0.6 -1.9 putative cis-4-hydroxy-D-proline oxidase compare
PP_1036 -0.6 -3.7 membrane-bound lytic murein transglycosylase F compare
PP_4481 -0.6 -2.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4011 -0.6 -4.4 isocitrate dehydrogenase, NADP(+)-specific compare
PP_2090 -0.6 -1.4 Uroporphyrinogen-III C-methyltransferase compare
PP_1972 -0.6 -2.8 aromatic-amino-acid aminotransferase compare
PP_2721 -0.6 -2.6 conserved membrane protein of unknown function compare
PP_2804 -0.6 -2.0 Hydrolase, alpha/beta fold family compare
PP_2661 -0.6 -2.0 conserved protein of unknown function compare
PP_4961 -0.6 -0.7 putative Lipoprotein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-tyrosine disodium salt in Pseudomonas putida KT2440

For carbon source L-tyrosine disodium salt across organisms