Experiment set47S215 for Pseudomonas putida KT2440

Compare to:

mixed carbon sources Trisodium citrate dihydrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM

200 most important genes:

  gene name fitness t score description  
PP_5076 -4.6 -15.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_5075 -4.3 -10.1 glutamate synthase (NADPH) beta subunit compare
PP_5104 -4.2 -6.4 thiazole synthase compare
PP_2088 -3.7 -3.6 RNA polymerase sigma factor SigX compare
PP_1420 -3.6 -4.9 Transcriptional regulatory protein tctD compare
PP_4922 -3.6 -10.1 Phosphomethylpyrimidine synthase compare
PP_1233 -3.5 -2.4 sulfurtransferase compare
PP_3790 -3.4 -6.6 diaminopimelate epimerase compare
PP_1421 -3.1 -6.6 putative Sensor histidine kinase TctE compare
PP_1418 -2.8 -5.4 putative Tricarboxylate transport protein TctC compare
PP_5303 -2.8 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0735 -2.7 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4782 -2.7 -4.1 Phosphomethylpyrimidine kinase compare
PP_1231 -2.7 -2.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1079 -2.6 -1.8 Ornithine carbamoyltransferase compare
PP_4937 -2.3 -2.3 toluene tolerance protein compare
PP_t12 -2.1 -1.6 tRNA-Thr compare
PP_0787 -2.0 -1.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4997 -1.9 -1.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4262 -1.9 -1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5621 -1.9 -2.7 protein of unknown function compare
PP_1733 -1.8 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_3946 -1.8 -1.7 HTH-type transcriptional repressor NicR compare
PP_0834 -1.8 -2.4 Sec translocation complex subunit YajC compare
PP_3105 -1.7 -2.6 conserved membrane protein of unknown function compare
PP_4917 -1.7 -3.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0435 -1.7 -4.4 Peptidase, M23/M37 family compare
PP_4696 -1.5 -1.0 Nitrogen regulation protein NR(I) compare
PP_0022 -1.5 -1.4 hypothetical protein compare
PP_5143 -1.4 -1.9 conserved membrane protein of unknown function compare
PP_0346 -1.4 -5.3 putative Heptose kinase WapQ compare
PP_1898 -1.4 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_3333 -1.3 -3.4 conserved protein of unknown function compare
PP_4695 -1.3 -6.5 Sensory box histidine kinase compare
PP_0184 -1.3 -0.9 Argininosuccinate lyase compare
PP_1598 -1.3 -2.6 regulatory intramembrane protein RIP zinc protease compare
PP_2001 -1.2 -1.7 O-succinylhomoserine sulfhydrylase compare
PP_0086 -1.2 -1.8 conserved protein of unknown function compare
PP_0153 -1.2 -2.0 hypothetical protein compare
PP_1826 -1.2 -2.1 Hydrolase, isochorismatase family compare
PP_3902 -1.2 -2.1 conserved protein of unknown function compare
PP_5483 -1.2 -1.9 conserved protein of unknown function compare
PP_3519 -1.2 -1.3 putative Lipoprotein compare
PP_5017 -1.2 -1.3 Sec-independent protein translocase protein TatB compare
PP_4890 -1.2 -0.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_3102 -1.2 -2.9 conserved protein of unknown function compare
PP_1410 -1.2 -1.3 conserved protein of unknown function compare
PP_0978 -1.2 -1.6 conserved protein of unknown function compare
PP_5097 -1.1 -1.1 homoserine O-acetyltransferase compare
PP_1348 -1.1 -3.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0999 -1.1 -1.7 carbamate kinase compare
PP_1088 -1.1 -1.5 Argininosuccinate synthase compare
PP_3098 -1.1 -1.5 conserved protein of unknown function compare
PP_5001 -1.1 -2.3 protease HslVU, ATPase component compare
PP_4143 -1.1 -2.5 conserved protein of unknown function compare
PP_3480 -1.1 -2.8 conserved protein of unknown function compare
PP_2416 -1.1 -2.3 putative Iron ABC transporter, ATP-binding protein compare
PP_2031 -1.1 -1.6 conserved protein of unknown function compare
PP_5083 -1.1 -2.5 putative Type IV pili biogenesis protein PilM compare
PP_3555 -1.1 -3.9 putative Transmembrane sensor compare
PP_3277 -1.1 -3.2 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_1633 -1.1 -2.8 conserved exported protein of unknown function compare
PP_0406 -1.0 -1.8 Nucleotidyltransferase family protein compare
PP_5705 -1.0 -1.7 protein of unknown function compare
PP_5393 -1.0 -0.9 putative metal-binding chaperone compare
PP_1055 -1.0 -1.4 Type II secretion pathway protein GspN compare
PP_4008 -1.0 -1.9 ATP-dependent serine protease compare
PP_5100 -1.0 -2.1 dITP/XTP pyrophosphatase compare
PP_0881 -1.0 -3.0 dipeptide ABC transporter - putative membrane subunit compare
PP_2844 -1.0 -3.1 Urease subunit beta compare
PP_5552 -1.0 -2.2 conserved protein of unknown function compare
PP_2327 -1.0 -0.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1128 -1.0 -1.9 OmpA family protein compare
PP_3840 -1.0 -1.5 conserved protein of unknown function compare
PP_1062 -1.0 -2.3 MutT/nudix family protein compare
PP_4247 -1.0 -1.5 Exonuclease compare
PP_0566 -1.0 -1.2 translation-related factor compare
PP_4879 -1.0 -2.6 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2087 -1.0 -1.3 CmpX protein compare
PP_0422 -1.0 -0.7 Indole-3-glycerol phosphate synthase compare
PP_2718 -1.0 -1.9 arsenic resistance transcriptional regulator compare
PP_2433 -0.9 -0.6 conserved protein of unknown function compare
PP_3539 -0.9 -2.2 putative Transcriptional regulator compare
PP_0185 -0.9 -4.0 Positive alginate biosynthesis regulatory protein compare
PP_1381 -0.9 -1.2 4-carboxymuconolactone decarboxylase compare
PP_0685 -0.9 -1.9 conserved protein of unknown function compare
PP_5035 -0.9 -3.3 Histidine utilization repressor compare
PP_5594 -0.9 -1.9 conserved protein of unknown function compare
PP_2773 -0.9 -1.6 conserved protein of unknown function compare
PP_2868 -0.9 -3.6 Transcriptional regulator, Cro/CI family compare
PP_0209 -0.9 -2.7 ATP-binding taurine transporter subunit compare
PP_t11 -0.9 -1.6 tRNA-Lys compare
PP_0125 -0.9 -2.1 putative cytochrome c-type protein compare
PP_1211 -0.9 -2.6 conserved protein of unknown function compare
PP_4340 -0.9 -2.0 response regulator for chemotactic signal transduction compare
PP_2748 -0.9 -1.7 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2378 -0.9 -1.0 Fe/S biogenesis protein NfuA compare
PP_2737 -0.9 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1548 -0.9 -1.9 conserved protein of unknown function compare
PP_4199 -0.9 -0.9 putative Lipoprotein compare
PP_1207 -0.9 -1.5 conserved protein of unknown function compare
PP_4004 -0.9 -2.5 DNA translocase FtsK compare
PP_1430 -0.9 -4.1 putative periplasmic serine endoprotease DegP-like compare
PP_1344 -0.9 -1.3 conserved protein of unknown function compare
PP_1734 -0.9 -1.9 Probable septum site-determining protein MinC compare
PP_0420 -0.9 -1.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4679 -0.8 -0.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2348 -0.8 -2.6 Sensor histidine kinase compare
PP_1426 -0.8 -5.2 L-aspartate oxidase compare
PP_1261 -0.8 -1.5 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_t29 -0.8 -1.2 tRNA-Ala compare
PP_5598 -0.8 -2.2 conserved protein of unknown function compare
PP_1300 -0.8 -1.7 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0417 -0.8 -2.0 Anthranilate synthase component 1 compare
PP_0220 -0.8 -2.2 methionine import ATP-binding protein metN2 compare
PP_5572 -0.8 -2.1 protein of unknown function compare
PP_4481 -0.8 -2.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2575 -0.8 -1.5 conserved exported protein of unknown function compare
PP_5162 -0.8 -2.8 conserved exported protein of unknown function compare
PP_3198 -0.8 -0.8 Ferredoxin, 2Fe-2S compare
PP_5086 -0.8 -4.1 putative nuclease (SNase domain protein) compare
PP_1217 -0.8 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5667 -0.8 -2.1 putative microcin B17-like-processing protein, McbC family compare
PP_4013 -0.8 -2.8 MutT/nudix family protein compare
PP_5313 -0.8 -1.7 DNA-binding protein HU-alpha compare
PP_4848 -0.8 -1.5 Curved DNA-binding protein compare
PP_1317 -0.8 -1.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5519 -0.8 -2.1 conserved protein of unknown function of phage origin compare
PP_4609 -0.8 -2.5 conserved membrane protein of unknown function compare
PP_0508 -0.8 -1.8 conserved exported protein of unknown function compare
PP_5456 -0.8 -1.2 conserved protein of unknown function compare
PP_5230 -0.8 -1.8 Tyrosine recombinase XerC compare
PP_4942 -0.8 -1.4 conserved protein of unknown function compare
PP_0967 -0.7 -0.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0339 -0.7 -0.7 Pyruvate dehydrogenase E1 component compare
PP_2070 -0.7 -1.4 Transcriptional regulator, AraC family compare
PP_1322 -0.7 -1.3 putative Lipoprotein compare
PP_0063 -0.7 -2.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3407 -0.7 -1.9 conserved protein of unknown function compare
PP_1635 -0.7 -1.1 DNA-binding response regulator compare
PP_4989 -0.7 -1.8 Protein PilJ compare
PP_3505 -0.7 -0.6 conserved protein of unknown function compare
PP_5448 -0.7 -2.2 conserved protein of unknown function compare
PP_2907 -0.7 -1.6 DNA-binding response regulator compare
PP_2631 -0.7 -1.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1294 -0.7 -2.4 molybdopterin synthase large subunit compare
PP_1025 -0.7 -2.2 2-isopropylmalate synthase compare
PP_2324 -0.7 -1.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3359 -0.7 -1.7 putative Hydroxycinnamic acid degradation regulator compare
PP_3002 -0.7 -1.4 shikimate dehydrogenase-related enzyme compare
PP_0839 -0.7 -1.8 tRNA Cm32/Um32 methyltransferase compare
PP_0827 -0.7 -1.5 putative phosphonate transport system permease protein PtxC compare
PP_5128 -0.7 -1.1 Dihydroxy-acid dehydratase compare
PP_5701 -0.7 -1.3 conserved protein of unknown function compare
PP_1304 -0.7 -2.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2759 -0.7 -2.0 ribose ABC transporter - ATP-binding subunit compare
PP_2693 -0.7 -2.5 putative Dipeptidase compare
PP_3693 -0.7 -2.0 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0888 -0.7 -0.9 Photosynthetic apparatus regulatory protein RegA compare
PP_5294 -0.7 -2.1 Ribonuclease PH compare
PP_2525 -0.7 -1.9 conserved protein of unknown function compare
PP_1468 -0.7 -1.1 Tyrosine recombinase XerD compare
PP_3891 -0.7 -1.2 conserved protein of unknown function compare
PP_3185 -0.7 -2.0 Pet18 protein compare
PP_4630 -0.7 -2.8 Transcriptional regulator, MerR family compare
PP_5185 -0.7 -0.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1454 -0.7 -1.3 conserved protein of unknown function compare
PP_0290 -0.7 -0.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1263 -0.7 -2.0 putative Fusaric acid resistance protein compare
PP_1906 -0.7 -1.6 ribosomal large subunit pseudouridine synthase C compare
PP_2622 -0.7 -1.8 conserved protein of unknown function compare
PP_2768 -0.7 -1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1190 -0.7 -2.0 conserved protein of unknown function compare
PP_1276 -0.7 -2.7 conserved protein of unknown function compare
PP_4678 -0.7 -0.4 Ketol-acid reductoisomerase compare
PP_0166 -0.7 -4.5 HlyD family secretion protein compare
PP_1147 -0.7 -2.2 conserved protein of unknown function compare
PP_0356 -0.6 -1.5 malate synthase G compare
PP_2118 -0.6 -1.7 conserved protein of unknown function compare
PP_3332 -0.6 -1.9 putative cytochrome c-type protein compare
PP_2928 -0.6 -3.3 Saccharopine dehydrogenase compare
PP_4994 -0.6 -0.6 conserved protein of unknown function compare
PP_1216 -0.6 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3110 -0.6 -0.6 protein of unknown function compare
PP_2331 -0.6 -2.2 conserved membrane protein of unknown function compare
PP_5597 -0.6 -1.8 conserved protein of unknown function compare
PP_4060 -0.6 -3.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2908 -0.6 -1.9 DNA-binding transcriptional repressor compare
PP_1415 -0.6 -1.7 putative membrane associated enzyme subunit compare
PP_0612 -0.6 -3.1 FAD-dependent glycine/D-amino acid oxidase compare
PP_0362 -0.6 -3.8 Biotin synthase compare
PP_0393 -0.6 -0.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5039 -0.6 -1.2 conserved protein of unknown function compare
PP_0291 -0.6 -1.1 conserved protein of unknown function compare
PP_0092 -0.6 -1.6 putative lipoprotein compare
PP_2695 -0.6 -1.7 Transcriptional regulator, LysR family compare
PP_1164 -0.6 -1.1 Transcriptional regulator, LysR family compare
PP_5628 -0.6 -1.4 conserved protein of unknown function compare
PP_3880 -0.6 -1.0 conserved exported protein of unknown function compare
PP_0848 -0.6 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare


Specific Phenotypes

For 2 genes in this experiment

For mixed carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For mixed carbon source Trisodium citrate dihydrate across organisms