Experiment set3S78 for Castellaniella sp019104865 MT123

Compare to:

Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

200 most detrimental genes:

  gene name fitness t score description  
ABCV34_RS05785 +2.7 2.7 flagellar protein FlgN compare
ABCV34_RS11585 +1.8 1.7 ABC transporter ATP-binding protein compare
ABCV34_RS05780 +1.8 2.1 flagellar biosynthesis anti-sigma factor FlgM compare
ABCV34_RS11555 +1.6 2.0 MaoC family dehydratase compare
ABCV34_RS02760 +1.4 3.1 MarR family transcriptional regulator compare
ABCV34_RS02225 +1.3 1.2 exodeoxyribonuclease VII small subunit compare
ABCV34_RS13925 +1.2 2.4 heavy-metal-associated domain-containing protein compare
ABCV34_RS05610 +1.1 0.9 flagellar protein FlaG compare
ABCV34_RS02580 +1.1 3.8 H-NS histone family protein compare
ABCV34_RS14455 +1.1 6.0 diguanylate cyclase compare
ABCV34_RS13550 +1.0 4.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABCV34_RS09285 +1.0 2.0 aldolase/citrate lyase family protein compare
ABCV34_RS10415 +0.9 5.6 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
ABCV34_RS13895 +0.9 1.8 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
ABCV34_RS03915 +0.9 1.3 acylphosphatase compare
ABCV34_RS03805 +0.9 1.0 MerR family DNA-binding protein compare
ABCV34_RS12520 +0.9 0.9 YgcG family protein compare
ABCV34_RS05430 +0.9 1.6 hypothetical protein compare
ABCV34_RS13785 +0.9 2.5 nucleobase:cation symporter-2 family protein compare
ABCV34_RS12500 +0.9 1.3 hypothetical protein compare
ABCV34_RS00615 +0.9 2.3 DUF4863 family protein compare
ABCV34_RS06690 +0.9 2.5 branched-chain amino acid ABC transporter permease compare
ABCV34_RS05815 +0.8 4.5 chemotaxis response regulator protein-glutamate methylesterase compare
ABCV34_RS15225 +0.8 1.2 TIGR01244 family sulfur transferase compare
ABCV34_RS10405 +0.8 6.1 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB compare
ABCV34_RS08230 +0.8 2.9 CysB family HTH-type transcriptional regulator compare
ABCV34_RS13820 +0.8 3.2 LysR family transcriptional regulator compare
ABCV34_RS10305 +0.8 2.9 anthranilate phosphoribosyltransferase compare
ABCV34_RS02845 +0.8 1.1 ABC transporter ATP-binding protein compare
ABCV34_RS14890 +0.8 3.4 beta-ketoacyl synthase chain length factor compare
ABCV34_RS15820 +0.8 3.1 site-2 protease family protein compare
ABCV34_RS06220 +0.8 1.9 oxidoreductase-like domain-containing protein compare
ABCV34_RS01515 +0.8 3.2 urea amidolyase family protein compare
ABCV34_RS02150 +0.8 3.0 helix-turn-helix domain-containing protein compare
ABCV34_RS07110 +0.8 0.9 prephenate dehydratase compare
ABCV34_RS05920 +0.8 2.5 LysR substrate-binding domain-containing protein compare
ABCV34_RS10400 +0.8 6.3 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA compare
ABCV34_RS13265 +0.7 1.2 cytochrome oxidase small assembly protein compare
ABCV34_RS02280 +0.7 3.1 peroxiredoxin compare
ABCV34_RS05970 +0.7 0.8 hypothetical protein compare
ABCV34_RS00975 +0.7 1.5 LysR family transcriptional regulator compare
ABCV34_RS11225 +0.7 3.5 ATP phosphoribosyltransferase compare
ABCV34_RS08855 +0.7 4.2 CoA transferase compare
ABCV34_RS04555 +0.7 3.4 FliC/FljB family flagellin compare
ABCV34_RS03220 +0.7 2.6 hypothetical protein compare
ABCV34_RS05725 +0.7 4.2 flagellar hook-associated protein FlgK compare
ABCV34_RS11385 +0.7 4.1 LapD/MoxY N-terminal periplasmic domain-containing protein compare
ABCV34_RS11255 +0.7 0.9 phosphoribosyl-AMP cyclohydrolase compare
ABCV34_RS05720 +0.7 4.9 flagellar hook-associated protein FlgL compare
ABCV34_RS15800 +0.7 1.0 hypothetical protein compare
ABCV34_RS08440 +0.7 4.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABCV34_RS15580 +0.6 4.3 polyphosphate kinase 1 compare
ABCV34_RS01925 +0.6 3.2 4Fe-4S binding protein compare
ABCV34_RS10925 +0.6 4.5 homoserine O-acetyltransferase compare
ABCV34_RS02645 +0.6 3.0 histidinol-phosphate transaminase compare
ABCV34_RS10940 +0.6 2.1 TIGR00730 family Rossman fold protein compare
ABCV34_RS10410 +0.6 4.0 poly-beta-1,6-N-acetyl-D-glucosamine synthase compare
ABCV34_RS03935 +0.6 3.7 sulfate ABC transporter substrate-binding protein compare
ABCV34_RS06635 +0.6 4.1 cystathionine gamma-synthase family protein compare
ABCV34_RS00340 +0.6 2.5 IclR family transcriptional regulator compare
ABCV34_RS09480 +0.6 2.6 SprT family zinc-dependent metalloprotease compare
ABCV34_RS07155 +0.6 1.4 RNA polymerase sigma factor compare
ABCV34_RS14150 +0.6 1.6 Crp/Fnr family transcriptional regulator compare
ABCV34_RS09270 +0.6 0.9 RidA family protein compare
ABCV34_RS04500 +0.6 2.2 YchJ family metal-binding protein compare
ABCV34_RS05065 +0.6 2.7 methyl-accepting chemotaxis protein compare
ABCV34_RS02015 +0.6 1.8 DNA-binding protein compare
ABCV34_RS04320 +0.6 2.2 DUF2069 domain-containing protein compare
ABCV34_RS02145 +0.6 2.8 DMT family transporter compare
ABCV34_RS10510 +0.6 2.4 ABC transporter ATP-binding protein compare
ABCV34_RS07305 +0.6 2.1 3-hydroxyacyl-CoA dehydrogenase compare
ABCV34_RS08610 +0.6 1.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
ABCV34_RS07145 +0.6 1.2 DUF924 family protein compare
ABCV34_RS03930 +0.6 2.0 RsiV family protein compare
ABCV34_RS05615 +0.6 1.1 flagellar filament capping protein FliD compare
ABCV34_RS01050 +0.6 0.7 hypothetical protein compare
ABCV34_RS05315 +0.5 1.6 cold-shock protein compare
ABCV34_RS13090 +0.5 1.6 stability determinant compare
ABCV34_RS10220 +0.5 2.4 DUF4168 domain-containing protein compare
ABCV34_RS12725 +0.5 0.5 oligopeptide/dipeptide ABC transporter ATP-binding protein compare
ABCV34_RS01490 +0.5 2.6 TRAP transporter large permease subunit compare
ABCV34_RS12790 +0.5 2.5 FAD-binding oxidoreductase compare
ABCV34_RS14750 +0.5 1.9 aldehyde dehydrogenase (NADP(+)) compare
ABCV34_RS10715 +0.5 2.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABCV34_RS15805 +0.5 2.6 multidrug/biocide efflux PACE transporter compare
ABCV34_RS07690 +0.5 2.7 metallophosphoesterase compare
ABCV34_RS01425 +0.5 1.9 DoxX family protein compare
ABCV34_RS02165 +0.5 1.1 GNAT family N-acetyltransferase compare
ABCV34_RS06200 +0.5 2.8 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
ABCV34_RS11800 +0.5 1.3 VOC family protein compare
ABCV34_RS06600 +0.5 1.1 hypothetical protein compare
ABCV34_RS04285 +0.5 0.7 3-isopropylmalate dehydratase small subunit compare
ABCV34_RS09715 +0.5 2.1 ABC transporter ATP-binding protein compare
ABCV34_RS03945 +0.5 1.3 sulfate ABC transporter permease subunit CysW compare
ABCV34_RS13380 +0.5 2.5 MurR/RpiR family transcriptional regulator compare
ABCV34_RS06650 +0.5 2.7 DMT family transporter compare
ABCV34_RS14105 +0.5 1.3 Glu/Leu/Phe/Val dehydrogenase compare
ABCV34_RS04330 +0.5 3.0 CBS domain-containing protein compare
ABCV34_RS13195 +0.5 0.9 FmdB family zinc ribbon protein compare
ABCV34_RS11580 +0.5 1.4 ABC transporter ATP-binding protein compare
ABCV34_RS02310 +0.5 2.0 ornithine cyclodeaminase compare
ABCV34_RS15290 +0.5 0.5 methyltransferase domain-containing protein compare
ABCV34_RS11635 +0.5 2.9 TIM barrel protein compare
ABCV34_RS10620 +0.5 1.7 dienelactone hydrolase family protein compare
ABCV34_RS06145 +0.5 1.8 hypothetical protein compare
ABCV34_RS14945 +0.5 2.6 DUF3261 domain-containing protein compare
ABCV34_RS11230 +0.5 2.9 histidinol dehydrogenase compare
ABCV34_RS08650 +0.5 0.9 substrate-binding domain-containing protein compare
ABCV34_RS14460 +0.5 2.6 threonine ammonia-lyase, biosynthetic compare
ABCV34_RS01500 +0.5 2.8 TRAP transporter substrate-binding protein compare
ABCV34_RS07905 +0.4 1.6 IclR family transcriptional regulator compare
ABCV34_RS10920 +0.4 1.9 methionine biosynthesis protein MetW compare
ABCV34_RS12420 +0.4 2.8 2-isopropylmalate synthase compare
ABCV34_RS03650 +0.4 2.3 glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein compare
ABCV34_RS02770 +0.4 2.1 PDR/VanB family oxidoreductase compare
ABCV34_RS11530 +0.4 2.6 TRAP transporter small permease compare
ABCV34_RS04245 +0.4 2.7 ABC transporter substrate-binding protein compare
ABCV34_RS07600 +0.4 2.0 SDR family NAD(P)-dependent oxidoreductase compare
ABCV34_RS11870 +0.4 0.3 chromosomal replication initiator protein DnaA compare
ABCV34_RS01835 +0.4 2.2 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase compare
ABCV34_RS00135 +0.4 2.4 LysR substrate-binding domain-containing protein compare
ABCV34_RS04450 +0.4 2.0 LysR substrate-binding domain-containing protein compare
ABCV34_RS00225 +0.4 0.6 oxalate:formate antiporter compare
ABCV34_RS00535 +0.4 0.9 TOBE domain-containing protein compare
ABCV34_RS09455 +0.4 1.8 crotonase/enoyl-CoA hydratase family protein compare
ABCV34_RS01890 +0.4 0.6 peptidoglycan editing factor PgeF compare
ABCV34_RS07865 +0.4 1.9 4-hydroxy-2-oxovalerate aldolase compare
ABCV34_RS14380 +0.4 2.2 thiol reductant ABC exporter subunit CydC compare
ABCV34_RS07050 +0.4 1.9 lytic murein transglycosylase B compare
ABCV34_RS01210 +0.4 2.8 acetolactate synthase 3 catalytic subunit compare
ABCV34_RS00720 +0.4 1.5 alpha/beta hydrolase compare
ABCV34_RS03190 +0.4 2.3 TPM domain-containing protein compare
ABCV34_RS02835 +0.4 2.0 branched-chain amino acid ABC transporter permease compare
ABCV34_RS11145 +0.4 2.3 ABC transporter ATP-binding protein compare
ABCV34_RS12280 +0.4 0.6 gluconokinase compare
ABCV34_RS03940 +0.4 1.8 sulfate ABC transporter permease subunit CysT compare
ABCV34_RS03010 +0.4 0.5 thioredoxin compare
ABCV34_RS15395 +0.4 0.8 hypothetical protein compare
ABCV34_RS13505 +0.4 1.0 isoaspartyl peptidase/L-asparaginase compare
ABCV34_RS08225 +0.4 1.5 ABC transporter ATP-binding protein compare
ABCV34_RS01595 +0.4 2.7 4Fe-4S binding protein compare
ABCV34_RS05455 +0.4 1.5 helix-turn-helix transcriptional regulator compare
ABCV34_RS02275 +0.4 1.7 PhoH family protein compare
ABCV34_RS06525 +0.4 1.9 MotA/TolQ/ExbB proton channel family protein compare
ABCV34_RS08195 +0.4 2.2 C40 family peptidase compare
ABCV34_RS02905 +0.4 1.9 HDOD domain-containing protein compare
ABCV34_RS00925 +0.4 0.4 NAD(P)-dependent oxidoreductase compare
ABCV34_RS00530 +0.4 1.7 ATP-binding cassette domain-containing protein compare
ABCV34_RS12100 +0.4 0.7 sulfurtransferase-like selenium metabolism protein YedF compare
ABCV34_RS05285 +0.4 2.9 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase compare
ABCV34_RS08150 +0.4 1.1 isochorismatase family protein compare
ABCV34_RS07025 +0.4 1.4 peroxiredoxin compare
ABCV34_RS10460 +0.4 1.5 DUF4148 domain-containing protein compare
ABCV34_RS10420 +0.4 2.1 LuxR C-terminal-related transcriptional regulator compare
ABCV34_RS06495 +0.4 0.8 monovalent cation/H(+) antiporter subunit G compare
ABCV34_RS02700 +0.4 2.0 sigma-54-dependent Fis family transcriptional regulator compare
ABCV34_RS08895 +0.4 1.5 NAD(P)/FAD-dependent oxidoreductase compare
ABCV34_RS05175 +0.4 1.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
ABCV34_RS15090 +0.4 2.0 AzlC family ABC transporter permease compare
ABCV34_RS06215 +0.4 1.3 class II glutamine amidotransferase compare
ABCV34_RS00575 +0.4 0.9 ABC transporter ATP-binding protein compare
ABCV34_RS04925 +0.4 2.6 iron ABC transporter permease compare
ABCV34_RS01905 +0.4 2.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABCV34_RS06210 +0.4 1.7 cytochrome P450 compare
ABCV34_RS03050 +0.4 2.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
ABCV34_RS00490 +0.4 1.9 hypothetical protein compare
ABCV34_RS13345 +0.4 1.6 DUF493 family protein compare
ABCV34_RS00120 +0.4 0.8 mercury resistance co-regulator MerD compare
ABCV34_RS06490 +0.4 1.0 K+/H+ antiporter subunit F compare
ABCV34_RS10765 +0.4 2.7 carbon starvation CstA family protein compare
ABCV34_RS00865 +0.4 0.7 50S ribosomal protein L33 compare
ABCV34_RS02950 +0.4 0.9 Spy/CpxP family protein refolding chaperone compare
ABCV34_RS14600 +0.4 1.7 A24 family peptidase compare
ABCV34_RS13285 +0.4 0.4 PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein compare
ABCV34_RS05665 +0.4 1.4 flagellar export protein FliJ compare
ABCV34_RS04710 +0.4 1.4 sigma factor compare
ABCV34_RS10735 +0.4 1.1 rubredoxin compare
ABCV34_RS02945 +0.4 1.9 C40 family peptidase compare
ABCV34_RS05560 +0.4 1.2 MarR family transcriptional regulator compare
ABCV34_RS01510 +0.4 1.6 5-oxoprolinase subunit PxpA compare
ABCV34_RS02850 +0.4 0.6 ABC transporter ATP-binding protein compare
ABCV34_RS04985 +0.4 1.1 TatD family hydrolase compare
ABCV34_RS06915 +0.4 2.4 isocitrate lyase compare
ABCV34_RS10200 +0.4 1.9 GntR family transcriptional regulator compare
ABCV34_RS15730 +0.4 1.2 hypothetical protein compare
ABCV34_RS07390 +0.4 1.6 ABC transporter ATP-binding protein compare
ABCV34_RS10615 +0.4 1.6 ribosome biogenesis factor YjgA compare
ABCV34_RS14135 +0.4 1.4 branched-chain amino acid ABC transporter permease compare
ABCV34_RS01340 +0.4 0.8 CYTH domain-containing protein compare
ABCV34_RS14800 +0.4 1.7 5-dehydro-4-deoxyglucarate dehydratase compare
ABCV34_RS03535 +0.4 0.8 nitrogen regulation protein NR(II) compare
ABCV34_RS06230 +0.4 0.9 arsenate reductase (glutaredoxin) compare
ABCV34_RS06725 +0.4 0.4 hypothetical protein compare
ABCV34_RS04365 +0.4 0.8 ATPase, T2SS/T4P/T4SS family compare
ABCV34_RS03255 +0.3 1.6 JAB domain-containing protein compare
ABCV34_RS09540 +0.3 0.5 methionine ABC transporter permease compare
ABCV34_RS08155 +0.3 1.9 energy-dependent translational throttle protein EttA compare
ABCV34_RS06945 +0.3 1.3 SDR family oxidoreductase compare
ABCV34_RS01445 +0.3 1.1 DUF2892 domain-containing protein compare
ABCV34_RS06755 +0.3 1.9 branched-chain amino acid ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Castellaniella sp019104865 MT123 in survival experiments

For survival Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate across organisms