Experiment set3S65 for Castellaniella sp019104865 MT123

Compare to:

Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

200 most detrimental genes:

  gene name fitness t score description  
ABCV34_RS00390 +2.6 1.9 DNA-3-methyladenine glycosylase 2 family protein compare
ABCV34_RS05785 +1.9 1.2 flagellar protein FlgN compare
ABCV34_RS06585 +1.9 1.7 hypothetical protein compare
ABCV34_RS13430 +1.9 2.2 Fur family transcriptional regulator compare
ABCV34_RS09400 +1.8 2.4 SCO family protein compare
ABCV34_RS11585 +1.8 1.1 ABC transporter ATP-binding protein compare
ABCV34_RS11255 +1.7 1.7 phosphoribosyl-AMP cyclohydrolase compare
ABCV34_RS02760 +1.5 3.0 MarR family transcriptional regulator compare
ABCV34_RS11555 +1.5 1.9 MaoC family dehydratase compare
ABCV34_RS06725 +1.5 1.3 hypothetical protein compare
ABCV34_RS02845 +1.5 1.4 ABC transporter ATP-binding protein compare
ABCV34_RS07245 +1.5 0.7 SMR family transporter compare
ABCV34_RS00225 +1.4 1.7 oxalate:formate antiporter compare
ABCV34_RS05040 +1.4 1.2 hemerythrin domain-containing protein compare
ABCV34_RS07675 +1.4 2.5 Arm DNA-binding domain-containing protein compare
ABCV34_RS12280 +1.4 2.2 gluconokinase compare
ABCV34_RS11390 +1.3 2.3 TetR/AcrR family transcriptional regulator compare
ABCV34_RS08230 +1.3 4.0 CysB family HTH-type transcriptional regulator compare
ABCV34_RS05975 +1.3 1.8 NAD(P)-binding domain-containing protein compare
ABCV34_RS04380 +1.3 1.0 hypothetical protein compare
ABCV34_RS15290 +1.3 1.1 methyltransferase domain-containing protein compare
ABCV34_RS05020 +1.3 2.0 transporter substrate-binding domain-containing protein compare
ABCV34_RS06015 +1.2 1.0 hypothetical protein compare
ABCV34_RS14010 +1.2 1.7 hypothetical protein compare
ABCV34_RS14485 +1.1 0.5 SCP2 sterol-binding domain-containing protein compare
ABCV34_RS02225 +1.1 0.5 exodeoxyribonuclease VII small subunit compare
ABCV34_RS00545 +1.1 1.9 molybdopterin adenylyltransferase compare
ABCV34_RS14880 +1.0 3.8 hypothetical protein compare
ABCV34_RS01580 +1.0 2.8 ABC transporter ATP-binding protein compare
ABCV34_RS00235 +1.0 2.5 formate dehydrogenase subunit delta compare
ABCV34_RS10920 +1.0 4.7 methionine biosynthesis protein MetW compare
ABCV34_RS01490 +1.0 4.1 TRAP transporter large permease subunit compare
ABCV34_RS14935 +1.0 1.3 outer membrane lipoprotein carrier protein LolA compare
ABCV34_RS05195 +1.0 2.6 ABC transporter ATP-binding protein compare
ABCV34_RS00865 +1.0 1.0 50S ribosomal protein L33 compare
ABCV34_RS13535 +0.9 1.7 M55 family metallopeptidase compare
ABCV34_RS02530 +0.9 1.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
ABCV34_RS14635 +0.9 0.6 Nudix family hydrolase compare
ABCV34_RS09595 +0.9 2.6 acyl-CoA thioesterase compare
ABCV34_RS13710 +0.9 1.1 hydroxyphenylacetyl-CoA thioesterase PaaI compare
ABCV34_RS09290 +0.9 2.4 2-oxo-hept-4-ene-1,7-dioate hydratase compare
ABCV34_RS02380 +0.9 0.5 carbonic anhydrase compare
ABCV34_RS03185 +0.9 1.7 TPM domain-containing protein compare
ABCV34_RS10925 +0.9 5.4 homoserine O-acetyltransferase compare
ABCV34_RS06635 +0.9 4.6 cystathionine gamma-synthase family protein compare
ABCV34_RS04310 +0.8 0.8 MerR family transcriptional regulator compare
ABCV34_RS14455 +0.8 3.8 diguanylate cyclase compare
ABCV34_RS03800 +0.8 1.0 hypothetical protein compare
ABCV34_RS05815 +0.8 3.4 chemotaxis response regulator protein-glutamate methylesterase compare
ABCV34_RS10175 +0.8 2.5 NAD(P) transhydrogenase subunit alpha compare
ABCV34_RS03675 +0.8 1.5 redoxin domain-containing protein compare
ABCV34_RS06690 +0.8 1.7 branched-chain amino acid ABC transporter permease compare
ABCV34_RS01575 +0.8 0.8 ABC transporter permease compare
ABCV34_RS01550 +0.8 0.9 isochorismatase family protein compare
ABCV34_RS11400 +0.8 2.7 DUF4442 domain-containing protein compare
ABCV34_RS10500 +0.8 2.3 DUF4262 domain-containing protein compare
ABCV34_RS03500 +0.8 2.3 urea transporter compare
ABCV34_RS10405 +0.8 5.5 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB compare
ABCV34_RS10400 +0.8 6.1 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA compare
ABCV34_RS10800 +0.8 1.5 glutamate 5-kinase compare
ABCV34_RS04555 +0.8 2.8 FliC/FljB family flagellin compare
ABCV34_RS15015 +0.8 2.3 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
ABCV34_RS01515 +0.8 2.6 urea amidolyase family protein compare
ABCV34_RS07780 +0.8 2.4 2-hydroxyacid dehydrogenase compare
ABCV34_RS15725 +0.8 0.7 hypothetical protein compare
ABCV34_RS11885 +0.8 0.9 membrane protein insertion efficiency factor YidD compare
ABCV34_RS06475 +0.8 1.3 Na+/H+ antiporter subunit C compare
ABCV34_RS04335 +0.8 1.6 tRNA dihydrouridine(20/20a) synthase DusA compare
ABCV34_RS07275 +0.8 1.3 cytochrome c compare
ABCV34_RS10415 +0.7 3.9 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
ABCV34_RS01770 +0.7 1.6 hydantoinase B/oxoprolinase family protein compare
ABCV34_RS01040 +0.7 2.0 SDR family oxidoreductase compare
ABCV34_RS05380 +0.7 0.3 ornithine carbamoyltransferase compare
ABCV34_RS09950 +0.7 3.0 hypothetical protein compare
ABCV34_RS04210 +0.7 2.1 nitroreductase compare
ABCV34_RS12420 +0.7 4.1 2-isopropylmalate synthase compare
ABCV34_RS08855 +0.7 3.5 CoA transferase compare
ABCV34_RS12575 +0.7 2.4 phosphatase PAP2 family protein compare
ABCV34_RS13280 +0.7 1.6 NUDIX domain-containing protein compare
ABCV34_RS08185 +0.7 2.4 aminodeoxychorismate synthase component I compare
ABCV34_RS01495 +0.7 1.2 TRAP transporter small permease compare
ABCV34_RS02985 +0.7 2.0 HAD family hydrolase compare
ABCV34_RS07170 +0.7 1.8 hypothetical protein compare
ABCV34_RS00210 +0.7 2.6 siroheme synthase CysG compare
ABCV34_RS12820 +0.7 1.3 CoA transferase compare
ABCV34_RS13370 +0.7 1.3 c-type cytochrome compare
ABCV34_RS09095 +0.7 2.4 delta(1)-pyrroline-2-carboxylate reductase family protein compare
ABCV34_RS10410 +0.6 3.9 poly-beta-1,6-N-acetyl-D-glucosamine synthase compare
ABCV34_RS02310 +0.6 2.3 ornithine cyclodeaminase compare
ABCV34_RS03370 +0.6 2.5 VirB3 family type IV secretion system protein compare
ABCV34_RS05685 +0.6 1.5 flagellar motor switch protein FliN compare
ABCV34_RS11080 +0.6 2.9 helix-turn-helix domain-containing protein compare
ABCV34_RS04540 +0.6 0.7 helix-turn-helix transcriptional regulator compare
ABCV34_RS03940 +0.6 2.1 sulfate ABC transporter permease subunit CysT compare
ABCV34_RS15090 +0.6 2.0 AzlC family ABC transporter permease compare
ABCV34_RS00530 +0.6 2.0 ATP-binding cassette domain-containing protein compare
ABCV34_RS13355 +0.6 2.4 enoyl-CoA hydratase compare
ABCV34_RS00255 +0.6 1.8 NAD(P)H-dependent oxidoreductase subunit E compare
ABCV34_RS06740 +0.6 0.8 flavin reductase family protein compare
ABCV34_RS05545 +0.6 1.8 DUF444 family protein compare
ABCV34_RS00825 +0.6 1.6 RDD family protein compare
ABCV34_RS15115 +0.6 1.3 amino acid ABC transporter ATP-binding protein compare
ABCV34_RS06215 +0.6 1.2 class II glutamine amidotransferase compare
ABCV34_RS05600 +0.6 1.7 hemerythrin domain-containing protein compare
ABCV34_RS14105 +0.6 1.1 Glu/Leu/Phe/Val dehydrogenase compare
ABCV34_RS06410 +0.6 0.9 SCP2 sterol-binding domain-containing protein compare
ABCV34_RS10420 +0.6 2.5 LuxR C-terminal-related transcriptional regulator compare
ABCV34_RS08150 +0.5 1.3 isochorismatase family protein compare
ABCV34_RS01800 +0.5 3.2 CaiB/BaiF CoA-transferase family protein compare
ABCV34_RS04765 +0.5 0.8 P-II family nitrogen regulator compare
ABCV34_RS11535 +0.5 2.4 TRAP transporter large permease subunit compare
ABCV34_RS10900 +0.5 2.3 exodeoxyribonuclease III compare
ABCV34_RS05920 +0.5 0.9 LysR substrate-binding domain-containing protein compare
ABCV34_RS14675 +0.5 2.0 putative 2-aminoethylphosphonate ABC transporter ATP-binding protein compare
ABCV34_RS01510 +0.5 1.7 5-oxoprolinase subunit PxpA compare
ABCV34_RS05205 +0.5 1.3 ABC transporter permease compare
ABCV34_RS02770 +0.5 2.0 PDR/VanB family oxidoreductase compare
ABCV34_RS08845 +0.5 1.7 glycine cleavage system aminomethyltransferase GcvT compare
ABCV34_RS06965 +0.5 1.4 ABC transporter ATP-binding protein compare
ABCV34_RS05720 +0.5 3.3 flagellar hook-associated protein FlgL compare
ABCV34_RS04655 +0.5 2.1 J domain-containing protein compare
ABCV34_RS12800 +0.5 1.7 amino acid ABC transporter permease compare
ABCV34_RS08160 +0.5 1.6 hypothetical protein compare
ABCV34_RS08055 +0.5 1.7 amino acid ABC transporter permease compare
ABCV34_RS03435 +0.5 1.8 SRPBCC family protein compare
ABCV34_RS03930 +0.5 1.5 RsiV family protein compare
ABCV34_RS12255 +0.5 2.0 TRAP transporter small permease compare
ABCV34_RS11385 +0.5 2.5 LapD/MoxY N-terminal periplasmic domain-containing protein compare
ABCV34_RS10765 +0.5 2.7 carbon starvation CstA family protein compare
ABCV34_RS05500 +0.5 1.3 TIR domain-containing protein compare
ABCV34_RS10735 +0.5 1.5 rubredoxin compare
ABCV34_RS01410 +0.5 1.8 MaoC/PaaZ C-terminal domain-containing protein compare
ABCV34_RS01530 +0.5 0.4 isochorismatase family protein compare
ABCV34_RS14540 +0.5 1.6 cobalamin-binding protein compare
ABCV34_RS13620 +0.5 1.2 Lrp/AsnC family transcriptional regulator compare
ABCV34_RS05255 +0.5 2.6 branched-chain amino acid ABC transporter substrate-binding protein compare
ABCV34_RS14930 +0.5 1.9 thioesterase family protein compare
ABCV34_RS13775 +0.5 2.1 DUF2783 domain-containing protein compare
ABCV34_RS14625 +0.5 2.9 efflux RND transporter permease subunit compare
ABCV34_RS13870 +0.5 1.1 response regulator transcription factor compare
ABCV34_RS07905 +0.5 0.9 IclR family transcriptional regulator compare
ABCV34_RS00190 +0.5 2.7 P-type conjugative transfer protein TrbG compare
ABCV34_RS14115 +0.5 1.8 sulfate adenylyltransferase subunit CysD compare
ABCV34_RS02150 +0.5 1.1 helix-turn-helix domain-containing protein compare
ABCV34_RS09215 +0.5 0.4 redox-regulated ATPase YchF compare
ABCV34_RS08470 +0.5 1.2 ABC transporter ATP-binding protein compare
ABCV34_RS03755 +0.5 1.2 enoyl-CoA hydratase compare
ABCV34_RS13585 +0.5 2.9 diguanylate cyclase compare
ABCV34_RS09285 +0.5 0.3 aldolase/citrate lyase family protein compare
ABCV34_RS14135 +0.5 1.4 branched-chain amino acid ABC transporter permease compare
ABCV34_RS10910 +0.5 2.5 bile acid:sodium symporter family protein compare
ABCV34_RS05035 +0.5 1.9 ABC transporter ATP-binding protein compare
ABCV34_RS05890 +0.5 1.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) compare
ABCV34_RS07050 +0.5 1.8 lytic murein transglycosylase B compare
ABCV34_RS02830 +0.5 1.6 ABC transporter substrate-binding protein compare
ABCV34_RS12435 +0.5 0.7 (2Fe-2S)-binding protein compare
ABCV34_RS01505 +0.5 0.8 GntR family transcriptional regulator compare
ABCV34_RS13500 +0.5 1.2 MurR/RpiR family transcriptional regulator compare
ABCV34_RS13410 +0.5 1.9 ATP-dependent protease ATPase subunit HslU compare
ABCV34_RS03320 +0.5 1.5 P-type DNA transfer ATPase VirB11 compare
ABCV34_RS01920 +0.5 0.6 FTR1 family protein compare
ABCV34_RS07875 +0.5 2.3 ABC transporter ATP-binding protein compare
ABCV34_RS09310 +0.5 1.9 fumarylacetoacetate hydrolase family protein compare
ABCV34_RS01035 +0.5 1.6 M20 family metallopeptidase compare
ABCV34_RS03915 +0.4 0.6 acylphosphatase compare
ABCV34_RS03070 +0.4 1.4 pseudouridine synthase compare
ABCV34_RS14850 +0.4 1.9 helix-turn-helix domain-containing protein compare
ABCV34_RS06005 +0.4 0.8 RNA-binding S4 domain-containing protein compare
ABCV34_RS09725 +0.4 1.8 ATP-binding cassette domain-containing protein compare
ABCV34_RS06910 +0.4 1.9 FUSC family protein compare
ABCV34_RS00580 +0.4 1.5 ABC transporter ATP-binding protein compare
ABCV34_RS07880 +0.4 1.9 sugar ABC transporter permease compare
ABCV34_RS01105 +0.4 1.6 c-type cytochrome compare
ABCV34_RS15030 +0.4 1.4 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
ABCV34_RS12055 +0.4 1.0 transporter substrate-binding domain-containing protein compare
ABCV34_RS01175 +0.4 1.2 GntR family transcriptional regulator compare
ABCV34_RS06395 +0.4 2.1 GlxA family transcriptional regulator compare
ABCV34_RS12165 +0.4 0.9 LysR family transcriptional regulator compare
ABCV34_RS10430 +0.4 0.7 hypothetical protein compare
ABCV34_RS06775 +0.4 1.9 hypothetical protein compare
ABCV34_RS10830 +0.4 1.9 OmpA family protein compare
ABCV34_RS06220 +0.4 0.9 oxidoreductase-like domain-containing protein compare
ABCV34_RS13820 +0.4 0.8 LysR family transcriptional regulator compare
ABCV34_RS10220 +0.4 1.2 DUF4168 domain-containing protein compare
ABCV34_RS11510 +0.4 2.1 sugar phosphate isomerase/epimerase family protein compare
ABCV34_RS01870 +0.4 1.4 Tex family protein compare
ABCV34_RS13700 +0.4 2.0 ABC transporter substrate-binding protein compare
ABCV34_RS15195 +0.4 1.5 NnrS family protein compare
ABCV34_RS06060 +0.4 1.6 MBL fold metallo-hydrolase compare
ABCV34_RS02775 +0.4 1.9 ABC transporter substrate-binding protein compare
ABCV34_RS09135 +0.4 1.6 aldehyde dehydrogenase family protein compare
ABCV34_RS09160 +0.4 1.3 S8 family serine peptidase compare
ABCV34_RS15040 +0.4 1.6 FAD-dependent oxidoreductase compare
ABCV34_RS08275 +0.4 0.8 ferrochelatase compare
ABCV34_RS15365 +0.4 1.3 tRNA guanosine(34) transglycosylase Tgt compare
ABCV34_RS04825 +0.4 0.7 chemotaxis protein compare
ABCV34_RS06615 +0.4 2.0 integrase arm-type DNA-binding domain-containing protein compare
ABCV34_RS01220 +0.4 1.8 ketol-acid reductoisomerase compare
ABCV34_RS00535 +0.4 0.7 TOBE domain-containing protein compare
ABCV34_RS01480 +0.4 1.5 potassium transporter TrkG compare


Specific Phenotypes

None in this experiment

For Castellaniella sp019104865 MT123 in survival experiments

For survival Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate across organisms