Experiment set3S469 for Variovorax sp. SCN45

Compare to:

Community=guar; Passage=4

200 most important genes:

  gene name fitness t score description  
GFF5512 -6.7 -4.6 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF4292 -6.5 -1.4 no description compare
GFF5158 -6.2 -4.2 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF6250 -6.0 -4.1 Glutamate--cysteine ligase-like protein YbdK compare
GFF5513 -6.0 -4.1 N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18) compare
GFF3583 -5.8 -10.5 AMP nucleosidase (EC 3.2.2.4) compare
GFF6249 -5.7 -3.9 Transporter, monovalent cation:proton antiporter-2 (CPA2) family compare
GFF946 -5.7 -3.1 Iron-sulfur cluster regulator IscR compare
GFF2128 -5.5 -6.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF936 -5.5 -3.8 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF902 -5.5 -6.5 Transcriptional regulator, AsnC family compare
GFF3089 -5.3 -2.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF5509 -5.3 -3.7 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF3425 -5.2 -1.9 no description compare
GFF1324 -5.2 -3.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF3264 -5.1 -3.5 Methionine biosynthesis protein MetW compare
GFF6990 -5.1 -1.1 hypothetical protein compare
GFF4991 -5.1 -1.1 Polyhydroxyalkanoate granule-associated protein PhaF compare
GFF4829 -5.1 -9.1 Isocitrate lyase (EC 4.1.3.1) compare
GFF4724 -5.0 -3.5 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF3941 -5.0 -3.4 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF7253 -4.9 -2.3 Mobile element protein compare
GFF7242 -4.9 -1.1 hypothetical protein compare
GFF3660 -4.9 -10.5 integral membrane sensor signal transduction histidine kinase compare
GFF5721 -4.9 -2.1 Flagellar L-ring protein FlgH compare
GFF3956 -4.8 -1.8 no description compare
GFF903 -4.8 -7.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF2815 -4.8 -2.3 Primosomal replication protein N compare
GFF1682 -4.7 -2.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF5627 -4.7 -3.3 [4Fe-4S] cluster assembly scaffold protein Mrp (=ApbC) compare
GFF2307 -4.7 -7.8 Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB compare
GFF5156 -4.6 -21.5 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF5701 -4.6 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF2818 -4.6 -22.2 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
GFF5276 -4.5 -13.7 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) compare
GFF2123 -4.5 -1.6 Copper metallochaperone PCu(A)C, inserts Cu(I) into cytochrome oxidase subunit II compare
GFF934 -4.5 -8.7 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF577 -4.4 -1.9 TolA protein compare
GFF576 -4.4 -2.6 Tol biopolymer transport system, TolR protein compare
GFF4606 -4.4 -0.9 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16) compare
GFF302 -4.4 -2.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF6379 -4.4 -2.5 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) compare
GFF4557 -4.3 -3.0 Dihydroorotase (EC 3.5.2.3) compare
GFF6512 -4.3 -1.8 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) compare
GFF7380 -4.2 -7.0 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF292 -4.2 -8.0 Tol-Pal system beta propeller repeat protein TolB compare
GFF7250 -4.1 -0.9 Putative transposase InsK for insertion sequence element IS150 compare
GFF4903 -4.1 -0.9 no description compare
GFF2659 -4.0 -1.9 Electron transfer flavoprotein, alpha subunit compare
GFF3406 -4.0 -10.7 Benzoyl-CoA oxygenase component A compare
GFF6028 -4.0 -10.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
GFF4112 -4.0 -0.8 Rhodanese-related sulfurtransferase, 4 domains compare
GFF3957 -4.0 -2.4 Ribosome small subunit biogenesis RbfA-release protein RsgA compare
GFF5246 -3.9 -11.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF4447 -3.9 -2.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) compare
GFF269 -3.9 -6.4 2-methylaconitate isomerase compare
GFF2273 -3.9 -4.1 Transcriptional regulator, AcrR family compare
GFF3050 -3.9 -1.2 Lactam utilization protein LamB compare
GFF6197 -3.8 -2.3 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) compare
GFF5666 -3.8 -2.6 Prevent host death protein, Phd antitoxin compare
GFF1206 -3.8 -8.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF3974 -3.8 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF575 -3.8 -3.7 Tol-Pal system protein TolQ compare
GFF3250 -3.7 -1.3 Barstar, ribonuclease (Barnase) inhibitor compare
GFF6194 -3.7 -3.3 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF1257 -3.7 -1.1 Organosulfonate utilization protein SsuF compare
GFF4043 -3.7 -2.8 Copper sensory histidine kinase CusS compare
GFF966 -3.7 -5.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3772 -3.6 -1.9 Arginase (EC 3.5.3.1) compare
GFF1167 -3.6 -15.2 Predicted Lactate-responsive regulator, IclR family compare
GFF4454 -3.6 -2.5 Exoribonuclease II (EC 3.1.13.1) compare
GFF270 -3.6 -18.9 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) compare
GFF6190 -3.6 -8.4 3-hydroxyisobutyrate dehydrogenase family protein compare
GFF5333 -3.5 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3600 -3.5 -2.4 Pantothenate kinase type III, CoaX-like (EC 2.7.1.33) compare
GFF3229 -3.5 -2.3 hypothetical protein compare
GFF244 -3.5 -2.4 Cys regulon transcriptional activator CysB compare
GFF982 -3.4 -16.1 Cell division protein ZapE compare
GFF6328 -3.4 -0.7 LPS-assembly lipoprotein LptE compare
GFF6191 -3.4 -11.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF2987 -3.4 -6.2 CBS domain protein compare
GFF2847 -3.4 -1.6 histone-like nucleoid-structuring protein H-NS compare
GFF6980 -3.4 -2.1 Mobile element protein compare
GFF7016 -3.4 -1.8 FAD-dependent oxidoreductase compare
GFF2843 -3.4 -2.3 Murein hydrolase activator NlpD compare
GFF3320 -3.4 -1.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
GFF3152 -3.4 -3.3 hypothetical protein compare
GFF784 -3.3 -1.0 KEGG: RNA polymerase sigma-70 factor, ECF subfamily compare
GFF6161 -3.3 -1.2 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF6246 -3.3 -2.3 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF89 -3.3 -1.4 hypothetical protein compare
GFF2631 -3.3 -1.9 Transcriptional regulator, ArsR family compare
GFF213 -3.3 -2.3 tmRNA-binding protein SmpB compare
GFF1899 -3.3 -14.5 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits compare
GFF5267 -3.3 -2.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF6168 -3.3 -1.0 Na(+) H(+) antiporter subunit G compare
GFF2870 -3.3 -14.3 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) compare
GFF7335 -3.3 -1.0 no description compare
GFF1051 -3.3 -1.3 no description compare
GFF7379 -3.3 -9.8 Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) compare
GFF6305 -3.3 -17.1 Malate synthase G (EC 2.3.3.9) compare
GFF431 -3.2 -1.7 Esterase/lipase compare
GFF2804 -3.2 -2.2 Membrane protein compare
GFF944 -3.2 -1.8 Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
GFF5317 -3.2 -0.9 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS compare
GFF5065 -3.2 -1.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF2573 -3.2 -9.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF5491 -3.2 -2.2 Peptide deformylase (EC 3.5.1.88) compare
GFF291 -3.2 -5.7 Tol-Pal system peptidoglycan-associated lipoprotein PAL compare
GFF6150 -3.2 -10.8 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF4352 -3.1 -1.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF126 -3.1 -6.0 Repressor homolog compare
GFF1765 -3.1 -1.6 putative membrane protein compare
GFF6107 -3.0 -3.5 Zinc transporter, ZIP family compare
GFF5958 -3.0 -2.4 FIG00537018: hypothetical protein compare
GFF4748 -3.0 -1.3 Triosephosphate isomerase (EC 5.3.1.1) compare
GFF6695 -3.0 -9.5 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF3265 -3.0 -1.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF1246 -3.0 -2.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF15 -2.9 -1.2 no description compare
GFF4328 -2.9 -2.3 hypothetical protein compare
GFF6360 -2.9 -0.9 FIG00432660: hypothetical protein compare
GFF4145 -2.9 -0.9 transcriptional regulators-like protein compare
GFF6322 -2.9 -9.6 Glutathione synthetase (EC 6.3.2.3) compare
GFF487 -2.9 -8.7 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF1322 -2.9 -14.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF2627 -2.9 -2.0 Chorismate synthase (EC 4.2.3.5) compare
GFF5324 -2.9 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF7381 -2.9 -10.3 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
GFF408 -2.9 -1.2 Two-component system response regulator OmpR compare
GFF5727 -2.9 -1.7 Methyl-accepting chemotaxis sensor/transducer protein compare
GFF7377 -2.9 -8.2 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
GFF2714 -2.9 -2.4 2-ketogluconate utilization repressor PtxS compare
GFF4560 -2.8 -0.8 hypothetical protein compare
GFF4329 -2.8 -1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF168 -2.8 -8.6 MCP methyltransferase, CheR-type compare
GFF290 -2.8 -6.8 Cell division coordinator CpoB compare
GFF6862 -2.8 -4.2 Two-component system sensor histidine kinase compare
GFF3401 -2.7 -0.8 P-hydroxylaminobenzoate lyase compare
GFF1203 -2.7 -5.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF4803 -2.7 -5.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
GFF409 -2.7 -1.9 Osmolarity sensory histidine kinase EnvZ compare
GFF6127 -2.7 -8.3 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit compare
GFF2129 -2.7 -2.2 small multidrug resistance family (SMR) protein compare
GFF6182 -2.7 -1.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF2482 -2.7 -1.1 Urease accessory protein UreE compare
GFF3960 -2.7 -6.6 3'-to-5' oligoribonuclease (orn) compare
GFF1756 -2.6 -1.1 hypothetical protein compare
GFF2515 -2.6 -1.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF2055 -2.6 -7.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF1632 -2.6 -0.8 RNA polymerase ECF-type sigma factor compare
GFF3870 -2.6 -1.8 Ribonuclease III (EC 3.1.26.3) compare
GFF3352 -2.6 -0.8 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF5332 -2.6 -19.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF5896 -2.5 -1.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF1188 -2.5 -3.3 Thiazole synthase (EC 2.8.1.10) compare
GFF6040 -2.5 -3.1 LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent compare
GFF243 -2.5 -4.3 Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3) compare
GFF7328 -2.5 -2.6 no description compare
GFF4187 -2.5 -2.5 hypothetical protein compare
GFF6696 -2.5 -7.3 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF2572 -2.5 -11.8 Protein-export protein SecB (maintains pre-export unfolded state) compare
GFF4203 -2.5 -1.3 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
GFF6151 -2.4 -5.9 Transcriptional regulator, LysR family compare
GFF339 -2.4 -1.7 Exodeoxyribonuclease I (EC 3.1.11.1) compare
GFF7331 -2.4 -3.1 FIG00956224: hypothetical protein compare
GFF1155 -2.4 -4.0 Putative transmembrane protein compare
GFF4166 -2.4 -1.2 Cytidine deaminase (EC 3.5.4.5) compare
GFF1773 -2.4 -7.4 D-amino acid dehydrogenase (EC 1.4.99.6) compare
GFF2547 -2.4 -1.7 Type I antifreeze protein compare
GFF831 -2.4 -3.8 ChlD component of cobalt chelatase involved in B12 biosynthesis compare
GFF2345 -2.4 -3.0 Uncharacterized ferredoxin-like protein YfhL compare
GFF23 -2.4 -1.6 no description compare
GFF6401 -2.4 -6.6 Formiminoglutamic iminohydrolase (EC 3.5.3.13) compare
GFF1594 -2.4 -2.8 Antitoxin DinJ (binds YafQ toxin) compare
GFF7263 -2.4 -2.4 Malate dehydrogenase (EC 1.1.1.37) compare
GFF7294 -2.3 -1.6 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF5523 -2.3 -1.5 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1204 -2.3 -5.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF497 -2.3 -6.1 Phytoene synthase (EC 2.5.1.32) compare
GFF2239 -2.3 -0.8 no description compare
GFF1487 -2.3 -3.1 Tetrapartite efflux system component, FusD-like compare
GFF5458 -2.3 -2.2 D-erythronate dehydrogenase (NAD+) compare
GFF7035 -2.3 -5.7 UspA compare
GFF1900 -2.3 -4.5 Transcriptional regulator, LysR family compare
GFF268 -2.2 -4.8 Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
GFF1205 -2.2 -4.1 Oxidoreductase probably involved in sulfite reduction compare
GFF1707 -2.2 -2.0 no description compare
GFF6195 -2.2 -2.3 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
GFF3888 -2.2 -1.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF7255 -2.2 -1.6 BUG/TctC family periplasmic protein compare
GFF3168 -2.2 -1.1 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
GFF2393 -2.2 -1.6 Biopolymer transport protein ExbD/TolR compare
GFF6129 -2.2 -4.6 (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) compare
GFF271 -2.2 -9.0 2-methylcitrate synthase (EC 2.3.3.5) compare
GFF2090 -2.2 -2.6 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF4215 -2.2 -1.3 L-amino acid ABC transporter (Glu/Asp/His/...), permease protein 1 AapQ compare
GFF5877 -2.2 -1.5 Probable proline rich signal peptide protein compare
GFF5876 -2.2 -3.3 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF3952 -2.2 -1.5 LSU ribosomal protein L19p compare


Specific Phenotypes

None in this experiment

For Variovorax sp. SCN45 in complex community experiments

For complex community Community=guar; Passage=4 across organisms