Experiment set3S326 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse14; day3

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS15090 +2.1 6.8 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS15100 +2.0 5.0 hypothetical protein compare
HMPREF1058_RS02250 +1.9 15.8 hypothetical protein compare
HMPREF1058_RS16250 +1.8 9.7 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
HMPREF1058_RS15080 +1.8 5.9 glycoside hydrolase family 97 protein compare
HMPREF1058_RS15565 +1.8 12.7 hypothetical protein compare
HMPREF1058_RS11270 +1.8 12.6 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS10230 +1.7 1.6 hypothetical protein compare
HMPREF1058_RS11825 +1.7 6.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS04545 +1.7 5.9 hypothetical protein compare
HMPREF1058_RS02255 +1.6 8.7 DUF3244 domain-containing protein compare
HMPREF1058_RS02260 +1.5 7.5 hypothetical protein compare
HMPREF1058_RS14020 +1.5 10.5 cardiolipin synthase compare
HMPREF1058_RS0119645 +1.3 4.3 AAA family ATPase compare
HMPREF1058_RS11165 +1.3 6.0 glycoside hydrolase family 127 protein compare
HMPREF1058_RS18505 +1.2 1.7 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS11880 +1.2 9.9 hypothetical protein compare
HMPREF1058_RS02800 +1.2 5.8 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS02245 +1.2 2.6 cytidylate kinase-like family protein compare
HMPREF1058_RS16260 +1.1 2.2 hotdog fold thioesterase compare
HMPREF1058_RS03200 +1.1 5.2 V-type ATP synthase subunit K compare
HMPREF1058_RS05695 +1.1 3.1 helix-turn-helix domain-containing protein compare
HMPREF1058_RS15085 +1.0 4.9 TonB-dependent receptor compare
HMPREF1058_RS05200 +1.0 4.6 MaoC family dehydratase compare
HMPREF1058_RS03170 +1.0 3.8 hypothetical protein compare
HMPREF1058_RS16255 +1.0 4.1 isochorismate synthase compare
HMPREF1058_RS02335 +1.0 1.7 hypothetical protein compare
HMPREF1058_RS03180 +0.9 6.5 V-type ATP synthase subunit A compare
HMPREF1058_RS15095 +0.9 3.7 hypothetical protein compare
HMPREF1058_RS04600 +0.9 2.0 hypothetical protein compare
HMPREF1058_RS19120 +0.9 1.1 hypothetical protein compare
HMPREF1058_RS03295 +0.9 1.1 sulfur carrier protein ThiS compare
HMPREF1058_RS21210 +0.9 2.1 hypothetical protein compare
HMPREF1058_RS04430 +0.9 5.1 alpha-1,2-fucosyltransferase compare
HMPREF1058_RS07720 +0.9 4.9 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS16515 +0.9 3.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS17370 +0.8 3.2 UpxY family transcription antiterminator compare
HMPREF1058_RS18890 +0.8 2.9 DUF3127 domain-containing protein compare
HMPREF1058_RS21725 +0.8 2.5 hypothetical protein compare
HMPREF1058_RS03185 +0.8 6.2 V-type ATP synthase subunit B compare
HMPREF1058_RS02320 +0.8 1.9 hypothetical protein compare
HMPREF1058_RS0119615 +0.8 1.5 hypothetical protein compare
HMPREF1058_RS04950 +0.8 1.0 hypothetical protein compare
HMPREF1058_RS10705 +0.8 5.5 hypothetical protein compare
HMPREF1058_RS21310 +0.8 1.7 hypothetical protein compare
HMPREF1058_RS16830 +0.8 3.2 acyl-ACP thioesterase compare
HMPREF1058_RS10885 +0.8 5.7 glycosyltransferase compare
HMPREF1058_RS10815 +0.7 4.8 DUF4249 domain-containing protein compare
HMPREF1058_RS09860 +0.7 1.2 DUF3408 domain-containing protein compare
HMPREF1058_RS10890 +0.7 4.3 glycosyltransferase family 2 protein compare
HMPREF1058_RS21545 +0.7 2.0 hypothetical protein compare
HMPREF1058_RS02490 +0.7 2.4 four helix bundle protein compare
HMPREF1058_RS19025 +0.7 1.3 hypothetical protein compare
HMPREF1058_RS03275 +0.7 2.4 hypothetical protein compare
HMPREF1058_RS03195 +0.7 3.9 V-type ATP synthase subunit I compare
HMPREF1058_RS03190 +0.7 3.6 V-type ATP synthase subunit D compare
HMPREF1058_RS12640 +0.7 3.6 hypothetical protein compare
HMPREF1058_RS09825 +0.7 3.1 RteC domain-containing protein compare
HMPREF1058_RS03175 +0.7 3.5 DUF2764 domain-containing protein compare
HMPREF1058_RS18065 +0.7 2.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS01615 +0.7 0.8 tRNA-Lys compare
HMPREF1058_RS21575 +0.7 1.3 mobilization protein compare
HMPREF1058_RS01625 +0.7 1.2 hypothetical protein compare
HMPREF1058_RS10860 +0.7 5.5 glycosyltransferase family 8 protein compare
HMPREF1058_RS20440 +0.7 1.8 hypothetical protein compare
HMPREF1058_RS20490 +0.7 1.6 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS11830 +0.7 5.5 hypothetical protein compare
HMPREF1058_RS04410 +0.7 1.2 porin family protein compare
HMPREF1058_RS06265 +0.7 3.8 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS03940 +0.7 3.7 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS10955 +0.7 3.6 phosphatase PAP2 family protein compare
HMPREF1058_RS04745 +0.7 2.2 helix-turn-helix domain-containing protein compare
HMPREF1058_RS03935 +0.7 3.7 hypothetical protein compare
HMPREF1058_RS21475 +0.6 0.8 smalltalk protein compare
HMPREF1058_RS11155 +0.6 3.2 PD-(D/E)XK nuclease domain-containing protein compare
HMPREF1058_RS10875 +0.6 4.2 glycosyltransferase compare
HMPREF1058_RS09905 +0.6 1.6 conjugative transposon protein TraK compare
HMPREF1058_RS07735 +0.6 1.9 chloride channel protein compare
HMPREF1058_RS11275 +0.6 1.4 hypothetical protein compare
HMPREF1058_RS13060 +0.6 1.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05415 +0.6 1.3 Hsp20/alpha crystallin family protein compare
HMPREF1058_RS21380 +0.6 1.6 hypothetical protein compare
HMPREF1058_RS0119640 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS07370 +0.6 4.2 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1058_RS00465 +0.6 1.9 translation initiation factor compare
HMPREF1058_RS04235 +0.6 2.5 NUDIX hydrolase compare
HMPREF1058_RS10665 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS15570 +0.6 4.8 hypothetical protein compare
HMPREF1058_RS17345 +0.6 2.9 CatB-related O-acetyltransferase compare
HMPREF1058_RS10805 +0.6 2.9 FecR family protein compare
HMPREF1058_RS10305 +0.6 2.0 hypothetical protein compare
HMPREF1058_RS10455 +0.6 3.8 glycine C-acetyltransferase compare
HMPREF1058_RS11840 +0.6 4.8 hypothetical protein compare
HMPREF1058_RS01530 +0.6 1.2 NAD(P)H-dependent oxidoreductase compare
HMPREF1058_RS05185 +0.6 3.0 hypothetical protein compare
HMPREF1058_RS09940 +0.6 1.1 lysozyme compare
HMPREF1058_RS17285 +0.6 3.2 glycosyltransferase compare
HMPREF1058_RS05955 +0.6 3.0 hypothetical protein compare
HMPREF1058_RS05035 +0.6 3.9 C69 family dipeptidase compare
HMPREF1058_RS13065 +0.5 3.6 hypothetical protein compare
HMPREF1058_RS01865 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS05075 +0.5 2.1 hypothetical protein compare
HMPREF1058_RS16675 +0.5 2.7 DUF1282 family protein compare
HMPREF1058_RS17980 +0.5 2.3 hypothetical protein compare
HMPREF1058_RS09895 +0.5 1.8 DUF4141 domain-containing protein compare
HMPREF1058_RS05455 +0.5 3.3 alpha/beta fold hydrolase compare
HMPREF1058_RS17645 +0.5 4.1 DUF5113 domain-containing protein compare
HMPREF1058_RS17565 +0.5 1.2 tyrosine-type recombinase/integrase compare
HMPREF1058_RS06375 +0.5 1.5 glutaminase A compare
HMPREF1058_RS01640 +0.5 4.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS11015 +0.5 3.9 hypothetical protein compare
HMPREF1058_RS15540 +0.5 2.0 YccF domain-containing protein compare
HMPREF1058_RS01500 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS16405 +0.5 2.4 PepSY-like domain-containing protein compare
HMPREF1058_RS05625 +0.5 3.0 HipA domain-containing protein compare
HMPREF1058_RS01370 +0.5 3.2 hypothetical protein compare
HMPREF1058_RS0119260 +0.5 0.7 hypothetical protein compare
HMPREF1058_RS12570 +0.5 2.3 HIT family protein compare
HMPREF1058_RS08765 +0.5 3.6 AMP-binding protein compare
HMPREF1058_RS04190 +0.5 2.1 HAD family hydrolase compare
HMPREF1058_RS02005 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS18565 +0.5 0.7 hypothetical protein compare
HMPREF1058_RS05950 +0.5 1.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS04385 +0.5 2.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HMPREF1058_RS05355 +0.5 2.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS01235 +0.5 2.8 phosphoserine phosphatase SerB compare
HMPREF1058_RS10120 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS01330 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS01065 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS04515 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS13140 +0.5 2.4 sugar transferase compare
HMPREF1058_RS03435 +0.5 1.7 DNA-binding protein compare
HMPREF1058_RS17275 +0.5 1.8 GDP-L-fucose synthase compare
HMPREF1058_RS21070 +0.5 1.4 potassium-transporting ATPase subunit F compare
HMPREF1058_RS21480 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS01920 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS17910 +0.5 1.7 PadR family transcriptional regulator compare
HMPREF1058_RS09915 +0.5 1.8 conjugative transposon protein TraM compare
HMPREF1058_RS13425 +0.5 2.6 HU family DNA-binding protein compare
HMPREF1058_RS01520 +0.5 2.2 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS01475 +0.5 1.2 hypothetical protein compare
HMPREF1058_RS06725 +0.5 3.2 glycosyl transferase compare
HMPREF1058_RS21620 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS12050 +0.4 2.5 response regulator transcription factor compare
HMPREF1058_RS16485 +0.4 2.7 cyclomaltodextrinase C-terminal domain-containing protein compare
HMPREF1058_RS13045 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS03075 +0.4 2.6 DNA helicase RecQ compare
HMPREF1058_RS20715 +0.4 2.9 hypothetical protein compare
HMPREF1058_RS18980 +0.4 2.2 SGNH/GDSL hydrolase family protein compare
HMPREF1058_RS05215 +0.4 2.4 GtrA family protein compare
HMPREF1058_RS19145 +0.4 2.3 phage antirepressor KilAC domain-containing protein compare
HMPREF1058_RS02145 +0.4 1.4 hypothetical protein compare
HMPREF1058_RS16190 +0.4 1.0 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1058_RS10615 +0.4 1.1 acyl carrier protein compare
HMPREF1058_RS04340 +0.4 1.6 hypothetical protein compare
HMPREF1058_RS05945 +0.4 2.9 DUF4836 family protein compare
HMPREF1058_RS14110 +0.4 1.1 ribosome silencing factor compare
HMPREF1058_RS01425 +0.4 2.6 sirohydrochlorin cobaltochelatase compare
HMPREF1058_RS04130 +0.4 1.0 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS12225 +0.4 1.9 GNAT family N-acetyltransferase compare
HMPREF1058_RS01720 +0.4 2.3 lysine exporter LysO family protein compare
HMPREF1058_RS13855 +0.4 2.1 histidine phosphatase family protein compare
HMPREF1058_RS02850 +0.4 2.9 DUF1566 domain-containing protein compare
HMPREF1058_RS02085 +0.4 2.5 TetR/AcrR family transcriptional regulator compare
HMPREF1058_RS07310 +0.4 2.6 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS04560 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS18010 +0.4 2.1 L-asparaginase 2 compare
HMPREF1058_RS03445 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS17105 +0.4 2.2 hypothetical protein compare
HMPREF1058_RS10125 +0.4 2.2 AAA family ATPase compare
HMPREF1058_RS02655 +0.4 2.5 type I-C CRISPR-associated protein Cas7/Csd2 compare
HMPREF1058_RS17005 +0.4 1.6 DUF4251 domain-containing protein compare
HMPREF1058_RS18750 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS11285 +0.4 2.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HMPREF1058_RS15230 +0.4 1.1 DUF4348 domain-containing protein compare
HMPREF1058_RS06650 +0.4 1.6 xylose isomerase compare
HMPREF1058_RS14315 +0.4 1.0 thioesterase family protein compare
HMPREF1058_RS17870 +0.4 2.1 metallophosphoesterase compare
HMPREF1058_RS03485 +0.4 1.9 RloB domain-containing protein compare
HMPREF1058_RS16955 +0.4 1.5 cold shock domain-containing protein compare
HMPREF1058_RS01435 +0.4 2.4 anaerobic ribonucleoside-triphosphate reductase compare
HMPREF1058_RS01205 +0.4 0.9 methyltransferase compare
HMPREF1058_RS10135 +0.4 2.3 hypothetical protein compare
HMPREF1058_RS16565 +0.4 1.6 TlpA family protein disulfide reductase compare
HMPREF1058_RS06070 +0.4 1.1 ferritin compare
HMPREF1058_RS07365 +0.4 1.9 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS16520 +0.4 1.3 nitroreductase family protein compare
HMPREF1058_RS10645 +0.4 1.7 ATP-binding protein compare
HMPREF1058_RS0120025 +0.4 1.8 DUF975 family protein compare
HMPREF1058_RS08940 +0.4 1.1 RNA polymerase sigma-70 factor compare
HMPREF1058_RS21140 +0.4 0.8 ISAs1 family transposase compare
HMPREF1058_RS0120135 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS03580 +0.4 1.0 UpxY family transcription antiterminator compare
HMPREF1058_RS16035 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS07515 +0.4 1.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS21695 +0.4 0.7 hypothetical protein compare
HMPREF1058_RS07445 +0.4 1.3 uracil-DNA glycosylase compare
HMPREF1058_RS07300 +0.4 1.9 MFS transporter compare
HMPREF1058_RS04275 +0.4 2.2 RNA-binding protein compare
HMPREF1058_RS10765 +0.4 2.0 ribonuclease III compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in mouse experiments

For mouse diet=StandardDiet; sample=FecalPellet; inoculation=Mono across organisms