Experiment set3S242 for Rhodanobacter sp000427505 FW510-R12

Compare to:

defined media with D-Glucose

200 most detrimental genes:

  gene name fitness t score description  
LRK53_RS14645 +1.2 1.9 molybdopterin molybdotransferase MoeA compare
LRK53_RS06870 +1.1 2.0 SUF system Fe-S cluster assembly regulator compare
LRK53_RS02445 +1.1 6.3 LacI family transcriptional regulator compare
LRK53_RS14640 +1.1 2.1 MoaD/ThiS family protein compare
LRK53_RS04890 +1.1 3.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS13100 +1.0 2.0 AzlC family ABC transporter permease compare
LRK53_RS02460 +1.0 8.1 GH1 family beta-glucosidase compare
LRK53_RS16345 +0.9 1.5 hypothetical protein compare
LRK53_RS02770 +0.9 5.3 type II secretion system protein GspM compare
LRK53_RS12880 +0.9 1.4 hypothetical protein compare
LRK53_RS02760 +0.8 7.0 type II secretion system protein GspK compare
LRK53_RS02740 +0.8 4.5 type II secretion system major pseudopilin GspG compare
LRK53_RS07635 +0.8 1.7 FUSC family protein compare
LRK53_RS02735 +0.8 5.8 type II secretion system inner membrane protein GspF compare
LRK53_RS07450 +0.8 1.2 50S ribosomal protein L19 compare
LRK53_RS09780 +0.7 1.2 tRNA-Gly compare
LRK53_RS02780 +0.7 6.6 type II secretion system secretin GspD compare
LRK53_RS05925 +0.7 4.4 A24 family peptidase compare
LRK53_RS04155 +0.7 1.6 DUF2383 domain-containing protein compare
LRK53_RS02745 +0.7 5.0 GspH/FimT family pseudopilin compare
LRK53_RS02750 +0.7 3.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK53_RS17410 +0.7 1.6 DUF456 domain-containing protein compare
LRK53_RS02755 +0.7 4.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK53_RS18120 +0.7 1.8 energy transducer TonB compare
LRK53_RS18980 +0.7 2.2 hypothetical protein compare
LRK53_RS02765 +0.7 3.8 PilN domain-containing protein compare
LRK53_RS06110 +0.7 1.6 NAD(P) transhydrogenase subunit alpha compare
LRK53_RS13770 +0.6 2.6 protease HtpX compare
LRK53_RS13705 +0.6 1.9 response regulator compare
LRK53_RS18650 +0.6 1.2 transposase compare
LRK53_RS07665 +0.6 2.0 glutathione S-transferase family protein compare
LRK53_RS00405 +0.6 1.5 trimeric intracellular cation channel family protein compare
LRK53_RS07600 +0.6 1.1 ABC transporter ATP-binding protein compare
LRK53_RS14085 +0.6 3.1 ABC transporter permease subunit compare
LRK53_RS07085 +0.6 1.3 YggS family pyridoxal phosphate-dependent enzyme compare
LRK53_RS17265 +0.6 2.4 FTR1 family protein compare
LRK53_RS19020 +0.6 2.4 hypothetical protein compare
LRK53_RS07270 +0.6 2.7 MAPEG family protein compare
LRK53_RS16035 +0.6 1.3 hypothetical protein compare
LRK53_RS02255 +0.6 1.8 3-oxoacyl-ACP reductase FabG compare
LRK53_RS02730 +0.6 4.3 type II secretion system ATPase GspE compare
LRK53_RS18255 +0.6 1.8 hypothetical protein compare
LRK53_RS04885 +0.6 4.5 galactonate dehydratase compare
LRK53_RS16940 +0.6 1.4 FHA domain-containing protein compare
LRK53_RS14735 +0.6 1.4 copper-containing nitrite reductase compare
LRK53_RS17325 +0.6 2.4 hypothetical protein compare
LRK53_RS08250 +0.5 1.5 HIT family protein compare
LRK53_RS16860 +0.5 0.6 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS01630 +0.5 2.0 protein-disulfide reductase DsbD compare
LRK53_RS13715 +0.5 3.2 phosphotransferase compare
LRK53_RS12485 +0.5 1.2 hypothetical protein compare
LRK53_RS11490 +0.5 1.8 preprotein translocase subunit SecG compare
LRK53_RS05075 +0.5 2.0 DUF3363 domain-containing protein compare
LRK53_RS14090 +0.5 1.3 ABC transporter ATP-binding protein compare
LRK53_RS04905 +0.5 3.7 phosphotransferase compare
LRK53_RS16935 +0.5 2.0 hypothetical protein compare
LRK53_RS16200 +0.5 1.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK53_RS12245 +0.5 1.4 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS05455 +0.5 1.4 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS12685 +0.5 2.2 acetoacetyl-CoA reductase compare
LRK53_RS18770 +0.5 1.1 hypothetical protein compare
LRK53_RS10530 +0.5 1.7 acyl-CoA dehydrogenase family protein compare
LRK53_RS18850 +0.5 1.1 type IV conjugative transfer system protein TraL compare
LRK53_RS18265 +0.5 1.6 hypothetical protein compare
LRK53_RS08530 +0.5 1.8 NUDIX hydrolase compare
LRK53_RS08430 +0.5 0.7 30S ribosomal protein THX compare
LRK53_RS14720 +0.5 2.0 hypothetical protein compare
LRK53_RS14715 +0.5 1.8 zinc-binding protein compare
LRK53_RS05645 +0.5 2.0 kinase compare
LRK53_RS14445 +0.5 2.0 TIGR00730 family Rossman fold protein compare
LRK53_RS15955 +0.5 1.1 PhzF family phenazine biosynthesis protein compare
LRK53_RS04110 +0.5 1.5 LytTR family transcriptional regulator DNA-binding domain-containing protein compare
LRK53_RS18200 +0.5 2.3 PRTRC system protein B compare
LRK53_RS05340 +0.5 1.0 peptide deformylase compare
LRK53_RS02290 +0.5 1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS12545 +0.5 1.6 hypothetical protein compare
LRK53_RS07490 +0.4 1.9 phytoene synthase compare
LRK53_RS00930 +0.4 1.6 K+/H+ antiporter subunit F compare
LRK53_RS07360 +0.4 1.8 Rid family hydrolase compare
LRK53_RS06990 +0.4 1.8 hypothetical protein compare
LRK53_RS02895 +0.4 3.7 O-antigen ligase family protein compare
LRK53_RS10260 +0.4 1.3 heme-binding protein compare
LRK53_RS15135 +0.4 1.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
LRK53_RS02385 +0.4 2.1 gamma carbonic anhydrase family protein compare
LRK53_RS00760 +0.4 0.6 DUF302 domain-containing protein compare
LRK53_RS15105 +0.4 1.5 flagellar export chaperone FliS compare
LRK53_RS12670 +0.4 2.0 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS07980 +0.4 0.8 GNAT family N-acetyltransferase compare
LRK53_RS19045 +0.4 2.1 hypothetical protein compare
LRK53_RS14350 +0.4 1.8 Spx/MgsR family RNA polymerase-binding regulatory protein compare
LRK53_RS18445 +0.4 0.8 hypothetical protein compare
LRK53_RS15200 +0.4 0.5 flagellar protein FlgN compare
LRK53_RS07145 +0.4 1.7 thioredoxin compare
LRK53_RS07200 +0.4 1.2 hypothetical protein compare
LRK53_RS08855 +0.4 1.1 Maf family nucleotide pyrophosphatase compare
LRK53_RS04815 +0.4 1.0 IS5 family transposase compare
LRK53_RS04875 +0.4 2.7 SMP-30/gluconolactonase/LRE family protein compare
LRK53_RS16955 +0.4 2.4 response regulator transcription factor compare
LRK53_RS04310 +0.4 0.8 YdcH family protein compare
LRK53_RS14890 +0.4 1.4 hypothetical protein compare
LRK53_RS03330 +0.4 0.6 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS04480 +0.4 1.8 amidase compare
LRK53_RS18295 +0.4 0.9 hypothetical protein compare
LRK53_RS04130 +0.4 1.4 universal stress protein compare
LRK53_RS18855 +0.4 1.5 hypothetical protein compare
LRK53_RS04325 +0.4 1.5 type II toxin-antitoxin system ParD family antitoxin compare
LRK53_RS14450 +0.4 0.9 cytochrome c compare
LRK53_RS12885 +0.4 1.3 GNAT family N-acetyltransferase compare
LRK53_RS15820 +0.4 0.3 metal/formaldehyde-sensitive transcriptional repressor compare
LRK53_RS07800 +0.4 1.9 type IV pilus modification protein PilV compare
LRK53_RS03280 +0.4 1.9 GGDEF domain-containing protein compare
LRK53_RS02890 +0.4 2.2 glycosyltransferase compare
LRK53_RS02340 +0.4 1.2 isopentenyl-diphosphate Delta-isomerase compare
LRK53_RS01925 +0.4 1.6 hypothetical protein compare
LRK53_RS00595 +0.4 1.9 DUF2945 domain-containing protein compare
LRK53_RS08290 +0.4 2.3 hypothetical protein compare
LRK53_RS06560 +0.4 2.0 hypothetical protein compare
LRK53_RS14880 +0.4 1.0 NUDIX hydrolase compare
LRK53_RS10465 +0.4 2.1 ABC transporter permease compare
LRK53_RS13005 +0.4 0.6 ATP-binding cassette domain-containing protein compare
LRK53_RS03660 +0.4 1.3 hypothetical protein compare
LRK53_RS18215 +0.4 1.8 single-stranded DNA-binding protein compare
LRK53_RS07095 +0.4 2.0 rhomboid family intramembrane serine protease compare
LRK53_RS16430 +0.4 1.2 nuclear transport factor 2 family protein compare
LRK53_RS08635 +0.3 0.9 M48 family metallopeptidase compare
LRK53_RS00270 +0.3 1.2 DUF883 family protein compare
LRK53_RS16640 +0.3 0.8 hypothetical protein compare
LRK53_RS03260 +0.3 1.9 lysoplasmalogenase compare
LRK53_RS03250 +0.3 2.0 ectonucleotide pyrophosphatase/phosphodiesterase compare
LRK53_RS08415 +0.3 1.4 transcriptional repressor compare
LRK53_RS05240 +0.3 1.5 DUF3501 family protein compare
LRK53_RS15190 +0.3 1.5 flagellar basal body P-ring formation protein FlgA compare
LRK53_RS05325 +0.3 2.1 YbdD/YjiX family protein compare
LRK53_RS06640 +0.3 1.0 ribonuclease HII compare
LRK53_RS08100 +0.3 0.6 MBL fold metallo-hydrolase compare
LRK53_RS14895 +0.3 0.6 STAS domain-containing protein compare
LRK53_RS17470 +0.3 2.2 nicotinamidase compare
LRK53_RS15480 +0.3 2.4 alpha-glucosidase family protein compare
LRK53_RS13025 +0.3 1.0 DMT family transporter compare
LRK53_RS04300 +0.3 1.3 DUF4398 domain-containing protein compare
LRK53_RS02350 +0.3 1.1 hypothetical protein compare
LRK53_RS10280 +0.3 0.5 2-oxo-3-hexenedioate decarboxylase compare
LRK53_RS18420 +0.3 1.5 hypothetical protein compare
LRK53_RS15060 +0.3 0.4 flagellar export protein FliJ compare
LRK53_RS08620 +0.3 1.2 VOC family protein compare
LRK53_RS16865 +0.3 1.9 aminopeptidase P N-terminal domain-containing protein compare
LRK53_RS10235 +0.3 1.2 DNA-binding protein compare
LRK53_RS07150 +0.3 1.7 paraquat-inducible protein A compare
LRK53_RS11535 +0.3 1.9 DUF2461 domain-containing protein compare
LRK53_RS00505 +0.3 1.4 amidohydrolase family protein compare
LRK53_RS08980 +0.3 1.0 NADH-quinone oxidoreductase subunit J compare
LRK53_RS09575 +0.3 0.8 hypothetical protein compare
LRK53_RS03450 +0.3 2.2 HlyD family secretion protein compare
LRK53_RS02645 +0.3 1.0 LysM peptidoglycan-binding domain-containing protein compare
LRK53_RS06505 +0.3 1.3 3-deoxy-7-phosphoheptulonate synthase class II compare
LRK53_RS10050 +0.3 1.0 DNA-binding domain-containing protein compare
LRK53_RS14285 +0.3 1.4 transposase compare
LRK53_RS10095 +0.3 1.7 hypothetical protein compare
LRK53_RS00460 +0.3 1.5 acetyltransferase compare
LRK53_RS06010 +0.3 2.7 pilin compare
LRK53_RS13810 +0.3 1.1 NADH:flavin oxidoreductase/NADH oxidase compare
LRK53_RS16945 +0.3 2.6 serine/threonine-protein kinase compare
LRK53_RS05930 +0.3 0.9 endonuclease domain-containing protein compare
LRK53_RS01825 +0.3 2.1 hypothetical protein compare
LRK53_RS18755 +0.3 0.8 hypothetical protein compare
LRK53_RS17900 +0.3 0.7 dUTP diphosphatase compare
LRK53_RS02495 +0.3 1.7 hypothetical protein compare
LRK53_RS19075 +0.3 1.5 DUF262 domain-containing protein compare
LRK53_RS02835 +0.3 1.2 ATP-dependent RNA helicase DbpA compare
LRK53_RS14685 +0.3 0.8 deoxyribose-phosphate aldolase compare
LRK53_RS16975 +0.3 2.1 sulfite exporter TauE/SafE family protein compare
LRK53_RS09895 +0.3 1.8 peptide-methionine (R)-S-oxide reductase MsrB compare
LRK53_RS13445 +0.3 1.6 DUF1289 domain-containing protein compare
LRK53_RS10160 +0.3 0.8 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS01060 +0.3 2.2 restriction endonuclease subunit S compare
LRK53_RS10830 +0.3 1.7 hypothetical protein compare
LRK53_RS18825 +0.3 1.1 hypothetical protein compare
LRK53_RS15085 +0.3 0.9 flagellar hook-basal body complex protein FliE compare
LRK53_RS16670 +0.3 1.5 DUF4381 family protein compare
LRK53_RS01160 +0.3 1.8 endonuclease/exonuclease/phosphatase family protein compare
LRK53_RS07990 +0.3 2.1 glutathione S-transferase family protein compare
LRK53_RS05275 +0.3 1.6 methyltransferase domain-containing protein compare
LRK53_RS18370 +0.3 0.9 DUF3150 domain-containing protein compare
LRK53_RS10540 +0.3 1.6 acetyl-CoA C-acyltransferase compare
LRK53_RS11545 +0.3 1.9 hypothetical protein compare
LRK53_RS05070 +0.3 1.0 helix-turn-helix transcriptional regulator compare
LRK53_RS14545 +0.3 1.7 pyridoxal-dependent decarboxylase compare
LRK53_RS16800 +0.3 1.4 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase compare
LRK53_RS03400 +0.3 1.4 pseudouridine synthase compare
LRK53_RS17060 +0.3 1.9 beta-lactamase family protein compare
LRK53_RS06145 +0.3 1.7 thioesterase family protein compare
LRK53_RS12515 +0.3 1.2 carboxymuconolactone decarboxylase family protein compare
LRK53_RS18155 +0.3 0.5 hypothetical protein compare
LRK53_RS00710 +0.3 1.6 insulinase family protein compare
LRK53_RS09820 +0.3 1.3 hypothetical protein compare
LRK53_RS04780 +0.3 1.0 YceI family protein compare
LRK53_RS16555 +0.3 1.6 DUF559 domain-containing protein compare
LRK53_RS18010 +0.3 1.7 GNAT family N-acetyltransferase compare
LRK53_RS05740 +0.3 0.5 chemotaxis protein CheW compare
LRK53_RS17450 +0.3 0.8 FAD/NAD(P)-binding protein compare


Specific Phenotypes

For 2 genes in this experiment

For nutrient D-Glucose in Rhodanobacter sp000427505 FW510-R12

For nutrient D-Glucose across organisms