Experiment set3S202 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES with Cobalt chloride hexahydrate 512 uM

200 most important genes:

  gene name fitness t score description  
LRK53_RS06820 -3.0 -2.9 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS06715 -2.7 -2.6 [protein-PII] uridylyltransferase compare
LRK53_RS05125 -2.6 -15.1 potassium transporter Kup compare
LRK53_RS03635 -2.4 -1.6 50S ribosomal protein L33 compare
LRK53_RS11155 -2.3 -4.6 glutamine-hydrolyzing GMP synthase compare
LRK53_RS16300 -2.1 -2.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS11285 -2.1 -2.4 tRNA-binding protein compare
LRK53_RS07450 -2.0 -1.2 50S ribosomal protein L19 compare
LRK53_RS06850 -2.0 -1.5 protein translocase subunit SecD compare
LRK53_RS07020 -2.0 -2.6 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS11005 -1.9 -2.8 Tn3 family resolvase compare
LRK53_RS04505 -1.9 -2.5 met regulon transcriptional regulator MetJ compare
LRK53_RS10035 -1.9 -1.8 hypothetical protein compare
LRK53_RS16520 -1.9 -3.3 HAMP domain-containing histidine kinase compare
LRK53_RS11790 -1.9 -1.8 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS17895 -1.8 -1.4 phosphomannomutase/phosphoglucomutase compare
LRK53_RS05555 -1.8 -1.7 NfeD family protein compare
LRK53_RS16900 -1.8 -3.9 ribose-5-phosphate isomerase RpiA compare
LRK53_RS03745 -1.8 -8.5 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS06175 -1.7 -2.2 acylphosphatase compare
LRK53_RS04190 -1.7 -4.0 dihydrolipoyl dehydrogenase compare
LRK53_RS04075 -1.6 -11.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS00690 -1.6 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS00915 -1.6 -1.5 Na+/H+ antiporter subunit C compare
LRK53_RS04185 -1.6 -4.0 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS17860 -1.6 -1.8 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS14770 -1.5 -2.2 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS05265 -1.5 -1.9 hypothetical protein compare
LRK53_RS12740 -1.5 -2.8 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS09265 -1.4 -1.3 GntR family transcriptional regulator compare
LRK53_RS05615 -1.4 -2.8 WGR domain-containing protein compare
LRK53_RS13510 -1.4 -7.1 polynucleotide adenylyltransferase PcnB compare
LRK53_RS06925 -1.4 -1.5 MtnX-like HAD-IB family phosphatase compare
LRK53_RS12585 -1.4 -3.6 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS14400 -1.4 -1.3 TetR family transcriptional regulator compare
LRK53_RS05220 -1.4 -3.0 nucleoside deaminase compare
LRK53_RS05865 -1.3 -3.9 response regulator transcription factor compare
LRK53_RS03695 -1.3 -8.5 glutamate--cysteine ligase compare
LRK53_RS02285 -1.3 -1.3 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS16345 -1.3 -1.4 hypothetical protein compare
LRK53_RS07695 -1.3 -2.8 enoyl-CoA hydratase-related protein compare
LRK53_RS09655 -1.3 -6.3 ribonuclease R compare
LRK53_RS01585 -1.3 -1.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS12250 -1.2 -6.7 Mth938-like domain-containing protein compare
LRK53_RS04950 -1.2 -1.9 carbohydrate kinase compare
LRK53_RS08820 -1.2 -1.9 YbaB/EbfC family nucleoid-associated protein compare
LRK53_RS16730 -1.2 -2.4 nucleoside hydrolase compare
LRK53_RS04370 -1.2 -5.9 cystathionine gamma-synthase compare
LRK53_RS07045 -1.2 -1.3 response regulator compare
LRK53_RS18395 -1.2 -2.4 DUF6338 family protein compare
LRK53_RS09830 -1.2 -1.7 phosphoglycerate mutase compare
LRK53_RS11330 -1.2 -1.3 (d)CMP kinase compare
LRK53_RS05680 -1.2 -2.1 pyrroline-5-carboxylate reductase compare
LRK53_RS01945 -1.2 -2.4 hypothetical protein compare
LRK53_RS05725 -1.2 -7.2 glutathione synthase compare
LRK53_RS15645 -1.1 -2.6 AI-2E family transporter compare
LRK53_RS13020 -1.1 -1.3 sulfur transferase domain-containing protein compare
LRK53_RS06945 -1.1 -3.6 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS17900 -1.1 -1.6 dUTP diphosphatase compare
LRK53_RS15825 -1.1 -7.5 CDF family Co(II)/Ni(II) efflux transporter DmeF conserved
LRK53_RS15705 -1.1 -5.9 RNA polymerase factor sigma-54 compare
LRK53_RS05765 -1.1 -1.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK53_RS03720 -1.1 -2.7 permease-like cell division protein FtsX compare
LRK53_RS04315 -1.1 -7.9 pyridoxal-phosphate dependent enzyme compare
LRK53_RS13525 -1.1 -3.5 ferredoxin family protein compare
LRK53_RS02150 -1.1 -1.6 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS03330 -1.1 -1.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS04890 -1.1 -1.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS09520 -1.1 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS08350 -1.1 -1.8 tryptophan synthase subunit beta compare
LRK53_RS02580 -1.1 -4.1 c-type cytochrome compare
LRK53_RS09760 -1.1 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS08120 -1.0 -3.2 CopL family metal-binding regulatory protein compare
LRK53_RS07870 -1.0 -2.2 hypothetical protein compare
LRK53_RS05175 -1.0 -1.3 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS15715 -1.0 -8.8 HPr(Ser) kinase/phosphatase compare
LRK53_RS13695 -1.0 -1.5 response regulator compare
LRK53_RS00405 -1.0 -1.5 trimeric intracellular cation channel family protein compare
LRK53_RS01095 -1.0 -3.4 lipid A biosynthesis acyltransferase compare
LRK53_RS16495 -1.0 -1.3 adenosylhomocysteinase compare
LRK53_RS08125 -1.0 -9.0 TonB-dependent receptor compare
LRK53_RS16720 -1.0 -8.0 citrate synthase compare
LRK53_RS03630 -1.0 -6.1 fatty acid desaturase compare
LRK53_RS04815 -1.0 -1.8 IS5 family transposase compare
LRK53_RS09090 -1.0 -5.3 polyribonucleotide nucleotidyltransferase compare
LRK53_RS16625 -0.9 -2.9 efflux RND transporter permease subunit compare
LRK53_RS13780 -0.9 -1.9 acetoacetyl-CoA reductase compare
LRK53_RS09540 -0.9 -5.0 protease modulator HflC compare
LRK53_RS07420 -0.9 -1.7 DNA repair protein RadA compare
LRK53_RS02135 -0.9 -2.0 hypothetical protein compare
LRK53_RS08485 -0.9 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
LRK53_RS11455 -0.9 -2.4 NfuA family Fe-S biogenesis protein compare
LRK53_RS06545 -0.9 -1.6 TIGR02099 family protein compare
LRK53_RS09475 -0.9 -5.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS05170 -0.9 -1.1 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS09595 -0.9 -1.1 hypothetical protein compare
LRK53_RS12580 -0.9 -1.9 biopolymer transporter ExbD compare
LRK53_RS00775 -0.9 -4.7 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS01185 -0.8 -2.4 GAF domain-containing protein compare
LRK53_RS10275 -0.8 -1.9 2-oxopent-4-enoate hydratase compare
LRK53_RS14455 -0.8 -1.1 ATP-binding protein compare
LRK53_RS18610 -0.8 -2.3 response regulator transcription factor compare
LRK53_RS07470 -0.8 -4.1 TRZ/ATZ family hydrolase compare
LRK53_RS17570 -0.8 -1.3 alpha/beta hydrolase compare
LRK53_RS04265 -0.8 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS14790 -0.8 -1.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS08310 -0.8 -6.8 chorismate synthase compare
LRK53_RS11565 -0.8 -1.8 nucleoside diphosphate kinase regulator compare
LRK53_RS09770 -0.8 -4.3 excinuclease ABC subunit UvrC compare
LRK53_RS03165 -0.8 -1.6 homoserine dehydrogenase compare
LRK53_RS01745 -0.8 -4.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS18025 -0.8 -1.1 hypothetical protein compare
LRK53_RS09315 -0.8 -1.6 pseudouridine synthase compare
LRK53_RS08980 -0.8 -2.3 NADH-quinone oxidoreductase subunit J compare
LRK53_RS14010 -0.8 -1.5 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS15250 -0.8 -4.0 membrane assembly protein AsmA compare
LRK53_RS04475 -0.8 -3.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS09535 -0.8 -4.7 FtsH protease activity modulator HflK compare
LRK53_RS15145 -0.8 -1.9 flagellar basal body L-ring protein FlgH compare
LRK53_RS02300 -0.8 -1.8 hypothetical protein compare
LRK53_RS00525 -0.7 -1.2 glycosyltransferase family 4 protein compare
LRK53_RS13670 -0.7 -1.7 acetyl-CoA C-acetyltransferase compare
LRK53_RS06570 -0.7 -0.5 DUF615 domain-containing protein compare
LRK53_RS00910 -0.7 -3.7 monovalent cation/H+ antiporter subunit A compare
LRK53_RS16675 -0.7 -1.5 DUF58 domain-containing protein compare
LRK53_RS09730 -0.7 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS15755 -0.7 -1.3 SDR family oxidoreductase compare
LRK53_RS16710 -0.7 -6.9 penicillin-binding protein 1A compare
LRK53_RS02075 -0.7 -2.7 hypothetical protein compare
LRK53_RS11040 -0.7 -1.9 hypothetical protein compare
LRK53_RS16605 -0.7 -2.8 large-conductance mechanosensitive channel protein MscL compare
LRK53_RS07040 -0.7 -2.1 sensor histidine kinase compare
LRK53_RS03410 -0.7 -1.7 SCP2 sterol-binding domain-containing protein compare
LRK53_RS07030 -0.7 -3.1 ABC transporter permease compare
LRK53_RS09240 -0.7 -1.2 DUF4386 domain-containing protein compare
LRK53_RS14110 -0.7 -1.0 GNAT family N-acetyltransferase compare
LRK53_RS05110 -0.7 -2.2 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK53_RS09340 -0.7 -2.0 hypothetical protein compare
LRK53_RS16550 -0.7 -1.9 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
LRK53_RS12150 -0.7 -2.9 trigger factor compare
LRK53_RS13625 -0.7 -0.8 carbon storage regulator CsrA compare
LRK53_RS07645 -0.7 -2.2 SDR family oxidoreductase compare
LRK53_RS15200 -0.7 -0.7 flagellar protein FlgN compare
LRK53_RS00565 -0.7 -1.0 ATP-binding protein compare
LRK53_RS11425 -0.7 -1.4 RnfH family protein compare
LRK53_RS15725 -0.7 -5.7 PTS fructose transporter subunit IIA compare
LRK53_RS13190 -0.7 -3.1 SAM-dependent methyltransferase compare
LRK53_RS01325 -0.7 -1.6 magnesium-translocating P-type ATPase compare
LRK53_RS07945 -0.7 -5.1 NAD-glutamate dehydrogenase compare
LRK53_RS11990 -0.7 -3.6 translation elongation factor 4 compare
LRK53_RS09710 -0.6 -2.0 high frequency lysogenization protein HflD compare
LRK53_RS15105 -0.6 -1.8 flagellar export chaperone FliS compare
LRK53_RS11780 -0.6 -0.6 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS09425 -0.6 -2.3 GlsB/YeaQ/YmgE family stress response membrane protein compare
LRK53_RS01340 -0.6 -4.5 DedA family protein compare
LRK53_RS16630 -0.6 -1.4 hypothetical protein compare
LRK53_RS16195 -0.6 -2.2 Co2+/Mg2+ efflux protein ApaG compare
LRK53_RS14375 -0.6 -3.8 excinuclease ABC subunit UvrB compare
LRK53_RS07200 -0.6 -1.4 hypothetical protein compare
LRK53_RS01505 -0.6 -1.3 hotdog fold thioesterase compare
LRK53_RS01170 -0.6 -5.0 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS10040 -0.6 -1.1 DUF2282 domain-containing protein compare
LRK53_RS12280 -0.6 -1.5 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS13955 -0.6 -3.1 LysR substrate-binding domain-containing protein compare
LRK53_RS04445 -0.6 -0.7 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS03715 -0.6 -0.6 cell division ATP-binding protein FtsE compare
LRK53_RS04390 -0.6 -1.3 glycosyltransferase family 2 protein compare
LRK53_RS00720 -0.6 -1.5 acyloxyacyl hydrolase compare
LRK53_RS00155 -0.6 -1.6 GFA family protein compare
LRK53_RS14800 -0.6 -3.0 DUF1631 domain-containing protein compare
LRK53_RS07035 -0.6 -1.5 TolC family protein compare
LRK53_RS12800 -0.6 -1.1 DUF4190 domain-containing protein compare
LRK53_RS13180 -0.6 -0.8 hypothetical protein compare
LRK53_RS00215 -0.6 -2.0 TetR/AcrR family transcriptional regulator compare
LRK53_RS08795 -0.6 -1.0 MBL fold metallo-hydrolase compare
LRK53_RS11035 -0.6 -1.1 major capsid protein compare
LRK53_RS00295 -0.6 -1.4 hypothetical protein compare
LRK53_RS02455 -0.6 -1.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS14910 -0.6 -1.3 chemoreceptor glutamine deamidase CheD compare
LRK53_RS12135 -0.6 -5.0 endopeptidase La compare
LRK53_RS11180 -0.6 -2.5 tetratricopeptide repeat protein compare
LRK53_RS16995 -0.6 -0.9 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS17425 -0.6 -3.3 hypothetical protein compare
LRK53_RS08620 -0.6 -1.7 VOC family protein compare
LRK53_RS05065 -0.6 -2.3 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS13420 -0.6 -3.6 excinuclease ABC subunit UvrA compare
LRK53_RS00925 -0.6 -1.7 Na+/H+ antiporter subunit E compare
LRK53_RS01735 -0.6 -5.0 TolC family outer membrane protein compare
LRK53_RS02785 -0.6 -1.7 ATP-dependent helicase HrpB compare
LRK53_RS10980 -0.6 -1.1 hypothetical protein compare
LRK53_RS14810 -0.6 -1.0 DUF3301 domain-containing protein compare
LRK53_RS12930 -0.6 -2.0 hypothetical protein compare
LRK53_RS09435 -0.6 -0.5 malate dehydrogenase compare
LRK53_RS05295 -0.6 -5.3 phosphoribosylformylglycinamidine synthase compare
LRK53_RS08480 -0.6 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK53_RS08730 -0.6 -0.9 hypothetical protein compare
LRK53_RS17205 -0.6 -2.4 fumarylacetoacetate hydrolase family protein compare
LRK53_RS08460 -0.6 -2.8 histidinol dehydrogenase compare
LRK53_RS15315 -0.6 -2.0 hypothetical protein compare
LRK53_RS00755 -0.6 -1.8 efflux RND transporter periplasmic adaptor subunit compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cobalt chloride hexahydrate in Rhodanobacter sp000427505 FW510-R12

For stress Cobalt chloride hexahydrate across organisms