Experiment set3IT085 for Caulobacter crescentus NA1000

Compare to:

PYE with sodium fluoride 15 mM

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01324 +2.4 9.6 LSU ribosomal protein L30P compare
CCNA_R0037 +2.0 13.1 tRNA-Glu compare
CCNA_00742 +1.6 9.1 HAD superfamily sugar phosphatase compare
CCNA_02416 +1.5 11.6 DNA-binding protein HU compare
CCNA_02135 +1.4 7.8 6-phosphogluconolactonase compare
CCNA_01712 +1.4 10.7 CopY/TcrY family transcriptional repressor compare
CCNA_02644 +1.4 5.3 cell division protein FtsL compare
CCNA_00043 +1.4 5.5 N utilization substance protein A NusA compare
CCNA_01562 +1.3 6.3 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase compare
CCNA_02663 +1.3 2.4 DnaK suppressor protein DksA compare
CCNA_02646 +1.3 3.3 cell division protein MraZ compare
CCNA_03612 +1.3 6.7 HTH XRE-family transcriptional regulator compare
CCNA_02732 +1.2 5.6 hypothetical protein compare
CCNA_00953 +1.2 5.0 flagellar motor switch protein FliN compare
CCNA_02103 +1.2 5.4 hypothetical protein compare
CCNA_03104 +1.2 7.4 3-dehydroquinate synthase compare
CCNA_02242 +1.2 10.1 PHB granule-associated protein, phasin2 compare
CCNA_01578 +1.2 7.6 beta-lactamase repressor compare
CCNA_01526 +1.1 5.0 flagellar biosynthesis regulatory protein flaF compare
CCNA_03256 +1.1 2.3 chorismate synthase compare
CCNA_02957 +1.1 4.0 ArsR-family transcriptional regulator compare
CCNA_00162 +1.1 6.2 hypothetical protein compare
CCNA_01433 +1.1 3.5 integration host factor alpha-subunit compare
CCNA_01375 +1.1 4.2 lactoylglutathione lyase compare
CCNA_01801 +1.1 7.5 hypothetical protein compare
CCNA_02134 +1.1 8.3 phosphogluconate dehydratase compare
CCNA_02328 +1.1 1.4 cell cycle regulatory protein GcrA compare
CCNA_00781 +1.1 9.1 two-component receiver protein CpdR compare
CCNA_01840 +1.1 8.7 MerR-family transcriptional regulator compare
CCNA_00375 +1.1 4.4 hypothetical protein compare
CCNA_01361 +1.0 2.4 PepSY superfamily protein compare
CCNA_00954 +1.0 7.6 AAA-family response regulator flbD compare
CCNA_01059 +1.0 9.3 S-layer protein rsaA compare
CCNA_02419 +1.0 4.3 TonB1 protein compare
CCNA_01655 +1.0 5.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03252 +1.0 9.1 CopY/TcrY-family transcriptional regulator compare
CCNA_R0054 +1.0 2.9 tRNA-Gly compare
CCNA_03260 +1.0 3.6 queuosine biosynthesis protein QueD compare
CCNA_03287 +1.0 4.9 PadR-family transcriptional regulator compare
CCNA_00950 +1.0 7.6 flagellar M-ring protein FliF compare
CCNA_03043 +1.0 3.8 type IV pilin protein pilA compare
CCNA_03105 +0.9 6.0 DnaJ domain protein compare
CCNA_02000 +0.9 1.9 SSU ribosomal protein S2P compare
CCNA_01931 +0.9 5.8 TetR-family transcriptional regulator compare
CCNA_01061 +0.9 4.1 type I secretion adaptor protein RsaE compare
CCNA_01751 +0.9 4.7 aminodeoxychorismate lyase compare
CCNA_03944 +0.9 1.3 hypothetical protein compare
CCNA_01765 +0.9 4.3 peptidase inhibitor, I78 family compare
CCNA_00962 +0.9 5.9 MarR-family transcriptional regulator compare
CCNA_03064 +0.9 6.8 PadR-family transcriptional regulator compare
CCNA_01979 +0.9 3.6 LexA repressor compare
CCNA_01848 +0.9 6.3 quinol cytochrome oxidase polypeptide IV compare
CCNA_01790 +0.9 4.5 protein translocase subunit secG compare
CCNA_00161 +0.9 6.5 hypothetical protein compare
CCNA_01629 +0.9 5.2 signal peptidase I compare
CCNA_01942 +0.9 5.2 Rrf2 family protein compare
CCNA_00952 +0.9 5.8 flagellar assembly protein FlbE/FliH compare
CCNA_01802 +0.9 2.8 hypothetical protein compare
CCNA_03951 +0.9 5.2 hypothetical protein compare
CCNA_01959 +0.9 3.0 3-dehydroquinate dehydratase compare
CCNA_01405 +0.9 3.1 GIY-YIG domain protein compare
CCNA_01851 +0.9 6.8 quinol cytochrome oxidase polypeptide II compare
CCNA_02805 +0.8 3.4 hypothetical protein compare
CCNA_01677 +0.8 4.3 carboxypeptidase G2 precursor compare
CCNA_00999 +0.8 3.4 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_01731 +0.8 4.7 colicin V production protein CvpA compare
CCNA_01804 +0.8 5.7 glutathione peroxidase compare
CCNA_02225 +0.8 4.3 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_00951 +0.8 5.2 flagellar motor switch protein FliG compare
CCNA_01694 +0.8 5.3 CocE/NonD family hydrolase compare
CCNA_03136 +0.8 3.2 flagellar export protein FliJ compare
CCNA_00518 +0.8 3.7 LSU ribosomal protein L25P compare
CCNA_01690 +0.8 3.5 MAPEG family membrane protein compare
CCNA_03401 +0.8 3.2 conserved hypothetical cytosolic protein compare
CCNA_02180 +0.8 1.8 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_01186 +0.8 3.9 hypothetical protein compare
CCNA_03643 +0.8 1.4 succinate dehydrogenase membrane anchor subunit compare
CCNA_02448 +0.8 6.4 hypothetical protein compare
CCNA_02324 +0.8 6.2 heat shock protein 33 hsp33 compare
CCNA_01739 +0.8 4.3 LSU ribosomal protein L9P compare
CCNA_03132 +0.8 4.2 transcriptional regulator, antitoxin protein higA compare
CCNA_02910 +0.8 6.6 TonB-dependent receptor compare
CCNA_01679 +0.8 5.2 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01541 +0.8 5.4 LysR-family transcriptional regulator compare
CCNA_02295 +0.8 2.2 hypothetical protein compare
CCNA_01573 +0.8 4.6 ArsR-family transcriptional regulator compare
CCNA_03729 +0.8 1.1 transaldolase-like protein compare
CCNA_01913 +0.8 5.1 MarR-family transcriptional regulator compare
CCNA_01295 +0.8 5.7 integral membrane protein compare
CCNA_03479 +0.8 4.3 MarR-family transcriptional regulator compare
CCNA_02980 +0.8 5.6 tryptophan 2,3-dioxygenase compare
CCNA_02475 +0.8 5.8 transcriptional regulator vanR compare
CCNA_01850 +0.8 5.9 quinol cytochrome oxidase polypeptide I compare
CCNA_01094 +0.8 1.8 hypothetical protein compare
CCNA_03289 +0.8 4.6 HicB-family RNA-binding protein compare
CCNA_01849 +0.8 4.8 quinol cytochrome oxidase polypeptide III compare
CCNA_03012 +0.8 4.6 peroxiredoxin compare
CCNA_01681 +0.8 2.9 RimI-like acetyltransferase compare
CCNA_00947 +0.8 6.0 flagellar hook protein FlgE compare
CCNA_03325 +0.7 3.5 hypothetical protein compare
CCNA_02133 +0.7 4.6 glucokinase compare
CCNA_02841 +0.7 2.3 hypothetical protein compare
CCNA_02760 +0.7 2.9 hypothetical protein compare
CCNA_02591 +0.7 4.8 glutaredoxin compare
CCNA_00895 +0.7 4.0 hypothetical protein compare
CCNA_03123 +0.7 4.8 ArsR-family transcriptional regulator compare
CCNA_00945 +0.7 4.7 chemotaxis protein MotD compare
CCNA_02063 +0.7 3.4 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_01060 +0.7 3.5 type I protein secretion ATP-binding protein RsaD compare
CCNA_03989 +0.7 5.7 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03701 +0.7 2.4 integration host factor beta-subunit compare
CCNA_01684 +0.7 4.7 phenylalanine-4-hydroxylase compare
CCNA_02617 +0.7 5.4 histidinol-phosphate aminotransferase compare
CCNA_02021 +0.7 2.5 hypothetical protein compare
CCNA_02140 +0.7 3.7 flagellar motor switch protein fliM compare
CCNA_01505 +0.7 2.2 hypothetical protein compare
CCNA_01814 +0.7 5.9 nitrogen regulation protein ntrB compare
CCNA_02576 +0.7 5.7 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_00949 +0.7 1.5 hypothetical protein compare
CCNA_00705 +0.7 2.8 hypothetical protein compare
CCNA_01918 +0.7 4.9 cyclic di-GMP effector protein PopA compare
CCNA_01949 +0.7 2.7 bactofilin A BacA compare
CCNA_00447 +0.7 4.2 chemotaxis protein cheD compare
CCNA_03893 +0.7 2.4 hypothetical protein compare
CCNA_03518 +0.7 5.6 cytochrome c oxidase polypeptide II coxB compare
CCNA_03161 +0.7 3.2 transcriptional regulator xylR compare
CCNA_02728 +0.7 4.5 hypothetical protein compare
CCNA_00684 +0.7 4.9 anti-sigma factor, ChrR-family compare
CCNA_02367 +0.7 5.1 CelR-family transcriptional regulator compare
CCNA_01954 +0.7 1.9 ribonuclease E compare
CCNA_00944 +0.7 4.5 flagellar hook length determination protein compare
CCNA_01453 +0.7 2.7 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00919 +0.7 3.0 hypothetical protein compare
CCNA_01235 +0.7 4.4 AcrR-family transcriptional regulator compare
CCNA_01116 +0.7 4.8 histidine protein kinase DivJ compare
CCNA_03975 +0.7 4.3 hypothetical protein compare
CCNA_02666 +0.7 3.9 chemotactic signal-response protein CheL compare
CCNA_02330 +0.7 2.8 hypothetical protein compare
CCNA_00699 +0.7 3.8 LSU ribosomal protein L28P compare
CCNA_03513 +0.7 4.2 cytochrome c oxidase subunit III coxC compare
CCNA_01678 +0.7 4.1 arginine N-succinyltransferase, beta chain compare
CCNA_02619 +0.7 5.3 stomatin/prohibitin-related protein compare
CCNA_02737 +0.7 2.3 queuosine biosynthesis protein QueF compare
CCNA_03400 +0.7 2.2 hypothetical protein compare
CCNA_02004 +0.7 1.7 SOS-induced inhibitor of cell division SidA compare
CCNA_01680 +0.7 4.1 succinylarginine dihydrolase compare
CCNA_03114 +0.7 2.2 hypothetical protein compare
CCNA_02577 +0.7 1.9 phosphoribosylformylglycinamidine synthase, purS component compare
CCNA_02138 +0.7 4.0 hypothetical protein compare
CCNA_01923 +0.7 4.1 ATP-dependent RNA helicase compare
CCNA_03964 +0.7 1.2 hypothetical protein compare
CCNA_00163 +0.7 4.6 exopolysaccharide transport family protein compare
CCNA_00023 +0.7 1.3 putative periplasmic protein compare
CCNA_02339 +0.7 5.0 methyltransferase compare
CCNA_02067 +0.6 4.1 conserved membrane spanning protein compare
CCNA_03129 +0.6 5.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01006 +0.6 3.0 flagellar hook-basal body complex protein FliE compare
CCNA_01552 +0.6 4.8 polar localization protein TipN compare
CCNA_02338 +0.6 4.4 hypothetical protein compare
CCNA_01968 +0.6 2.4 pentapeptide repeats containing protein compare
CCNA_01580 +0.6 3.2 M15 superfamily membrane peptidase compare
CCNA_03107 +0.6 4.6 cytidine deaminase compare
CCNA_00920 +0.6 2.6 hypothetical protein compare
CCNA_00735 +0.6 2.3 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_01533 +0.6 3.5 hypothetical protein compare
CCNA_03404 +0.6 4.3 regulator of CtrA degradation RcdA compare
CCNA_03609 +0.6 3.1 outer membrane protein compare
CCNA_01528 +0.6 4.0 flagellin fljK compare
CCNA_01067 +0.6 5.0 type I secretion outer membrane protein RsaFa compare
CCNA_02467 +0.6 4.3 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_01129 +0.6 3.2 flagellar biosynthesis protein FliQ compare
CCNA_01742 +0.6 2.9 hypothetical protein compare
CCNA_02075 +0.6 1.2 peptidoglycan binding endopeptidase DipM compare
CCNA_03918 +0.6 1.0 hypothetical protein compare
CCNA_02243 +0.6 5.1 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01393 +0.6 5.0 soluble lytic murein transglycosylase compare
CCNA_01619 +0.6 4.3 NYN domain protein compare
CCNA_00167 +0.6 4.2 metallophosphatase family protein compare
CCNA_01449 +0.6 1.4 fructose-1,6-bisphosphatase, FIG superfamily compare
CCNA_03271 +0.6 4.4 methionine gamma-lyase compare
CCNA_01813 +0.6 4.0 tRNA-dihydrouridine synthase compare
CCNA_01338 +0.6 3.4 glyoxalase family protein compare
CCNA_02447 +0.6 4.3 PspA/IM30 family regulatory protein compare
CCNA_03062 +0.6 4.0 cell wall hydrolase family protein compare
CCNA_01534 +0.6 2.0 hypothetical protein compare
CCNA_01593 +0.6 3.8 Xaa-pro aminopeptidase compare
CCNA_03420 +0.6 4.7 hypothetical protein compare
CCNA_02156 +0.6 4.3 hypothetical protein compare
CCNA_01608 +0.6 3.0 TetR-family transcriptional regulator compare
CCNA_00939 +0.6 2.7 MarR-family transcriptional regulator compare
CCNA_02560 +0.6 4.3 stalk cross-band protein StpC compare
CCNA_00114 +0.6 3.4 MarR/EmrR-family transcriptional regulator compare
CCNA_02379 +0.6 3.5 hypothetical protein compare
CCNA_R0075 +0.6 1.0 tRNA-Met compare
CCNA_02736 +0.6 4.1 nitroreductase family compare
CCNA_02042 +0.6 4.1 trigger factor chaperone compare
CCNA_01561 +0.6 2.1 hypothetical protein compare
CCNA_01242 +0.6 4.6 amino acid permease compare
CCNA_03215 +0.6 4.2 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01002 +0.6 3.5 flagellar biosyntheis protein FliP compare


Specific Phenotypes

For 1 genes in this experiment

For stress sodium fluoride in Caulobacter crescentus NA1000

For stress sodium fluoride across organisms