Experiment set3IT064 for Burkholderia phytofirmans PsJN

Compare to:

L-Alanine nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -7.4 -8.8 imidazole glycerol phosphate synthase compare
BPHYT_RS13705 -7.3 -5.1 chorismate synthase compare
BPHYT_RS14915 -7.3 -5.0 phosphoserine aminotransferase compare
BPHYT_RS06555 -7.3 -5.0 ketol-acid reductoisomerase compare
BPHYT_RS17680 -7.2 -4.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS09500 -7.1 -4.9 glucose-6-phosphate isomerase compare
BPHYT_RS17685 -7.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS04965 -7.0 -4.8 ATP-binding protein compare
BPHYT_RS33880 -7.0 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17675 -7.0 -2.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33900 -7.0 -6.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS33835 -7.0 -6.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33865 -6.8 -4.7 tryptophan synthase alpha chain compare
BPHYT_RS02610 -6.8 -4.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS14845 -6.8 -4.7 cysteine synthase compare
BPHYT_RS17670 -6.7 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS14895 -6.6 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17855 -6.6 -11.0 glutamate synthase compare
BPHYT_RS06545 -6.5 -7.7 acetolactate synthase compare
BPHYT_RS05960 -6.4 -6.5 endoribonuclease L-PSP compare
BPHYT_RS03150 -6.3 -14.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14910 -6.0 -10.4 chorismate mutase compare
BPHYT_RS17890 -6.0 -3.4 shikimate kinase compare
BPHYT_RS18320 -6.0 -12.1 orotate phosphoribosyltransferase compare
BPHYT_RS16245 -5.9 -5.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS05225 -5.9 -10.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS02590 -5.9 -9.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS13220 -5.8 -7.3 phosphomethylpyrimidine synthase compare
BPHYT_RS33915 -5.8 -7.4 isopropylmalate isomerase compare
BPHYT_RS14790 -5.8 -4.9 D-amino acid dehydrogenase compare
BPHYT_RS12985 -5.7 -3.6 amino acid acetyltransferase compare
BPHYT_RS17400 -5.7 -7.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS33920 -5.7 -3.9 type II citrate synthase compare
BPHYT_RS06405 -5.7 -6.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS17885 -5.6 -8.0 3-dehydroquinate synthase compare
BPHYT_RS08955 -5.6 -3.9 homoserine dehydrogenase compare
BPHYT_RS15920 -5.6 -10.8 argininosuccinate synthase compare
BPHYT_RS09515 -5.5 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33645 -5.5 -5.3 homoserine kinase compare
BPHYT_RS33840 -5.4 -9.4 amidophosphoribosyltransferase compare
BPHYT_RS08960 -5.3 -2.9 threonine synthase compare
BPHYT_RS04740 -5.3 -8.1 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS16905 -5.2 -6.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS14190 -5.2 -9.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06900 -5.2 -5.1 aspartate aminotransferase compare
BPHYT_RS15915 -5.2 -11.1 ornithine carbamoyltransferase compare
BPHYT_RS03640 -5.2 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16735 -5.2 -8.6 phosphogluconate dehydratase compare
BPHYT_RS33875 -5.2 -8.5 tryptophan synthase subunit alpha compare
BPHYT_RS14855 -5.2 -2.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS02905 -5.1 -21.6 RNA polymerase subunit sigma-54 compare
BPHYT_RS06610 -5.1 -2.3 triosephosphate isomerase compare
BPHYT_RS01595 -5.0 -9.0 homoserine O-acetyltransferase compare
BPHYT_RS03535 -5.0 -6.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS17700 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08850 -4.9 -3.1 transcriptional regulator compare
BPHYT_RS16675 -4.9 -3.3 dihydroorotase compare
BPHYT_RS16840 -4.8 -3.3 transketolase compare
BPHYT_RS17395 -4.8 -2.2 anthranilate synthase subunit II compare
BPHYT_RS17390 -4.8 -11.1 anthranilate synthase subunit I compare
BPHYT_RS14785 -4.8 -9.0 AsnC family transcriptional regulator conserved
BPHYT_RS16270 -4.7 -4.6 phosphoglycerate kinase compare
BPHYT_RS26955 -4.7 -1.5 succinylglutamate desuccinylase compare
BPHYT_RS17715 -4.7 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS10100 -4.6 -4.4 dihydroxy-acid dehydratase compare
BPHYT_RS04725 -4.4 -8.8 sulfite reductase compare
BPHYT_RS16255 -4.4 -3.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS12530 -4.2 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS03725 -4.0 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS06045 -4.0 -7.1 transaldolase compare
BPHYT_RS16835 -4.0 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS13655 -4.0 -14.0 GTP pyrophosphokinase compare
BPHYT_RS04340 -4.0 -6.4 hypothetical protein compare
BPHYT_RS12845 -3.8 -14.6 ATPase compare
BPHYT_RS17380 -3.8 -7.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS12935 -3.8 -10.7 chemotaxis protein CheY compare
BPHYT_RS18705 -3.7 -2.8 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS03625 -3.6 -10.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS23230 -3.5 -2.2 histidine kinase compare
BPHYT_RS15710 -3.5 -3.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS12840 -3.4 -5.7 pyruvate dehydrogenase compare
BPHYT_RS36275 -3.4 -5.1 hypothetical protein compare
BPHYT_RS03495 -3.4 -6.4 hypothetical protein compare
BPHYT_RS04720 -3.2 -3.8 transcriptional regulator compare
BPHYT_RS18340 -3.0 -2.2 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS04365 -2.9 -8.6 membrane protein compare
BPHYT_RS04745 -2.9 -3.9 sulfate adenylyltransferase compare
BPHYT_RS09155 -2.9 -6.8 3-ketoacyl-ACP reductase compare
BPHYT_RS12465 -2.9 -4.1 inositol monophosphatase compare
BPHYT_RS17520 -2.9 -5.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS03280 -2.9 -2.5 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS12150 -2.8 -14.6 PII uridylyl-transferase compare
BPHYT_RS02865 -2.8 -3.9 hypothetical protein compare
BPHYT_RS08565 -2.7 -1.1 dihydroorotate dehydrogenase compare
BPHYT_RS04730 -2.7 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04285 -2.7 -3.1 rhamnosyltransferase compare
BPHYT_RS04890 -2.7 -2.1 cobalamin biosynthesis protein CobD compare
BPHYT_RS03645 -2.7 -2.5 tRNA dimethylallyltransferase compare
BPHYT_RS33905 -2.7 -1.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS14195 -2.6 -2.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS02150 -2.6 -3.1 biotin synthase compare
BPHYT_RS09385 -2.6 -1.1 FAD-dependent oxidoreductase compare
BPHYT_RS12940 -2.5 -3.1 signal transduction histidine kinase compare
BPHYT_RS17405 -2.5 -1.5 indole-3-glycerol phosphate synthase compare
BPHYT_RS15620 -2.4 -3.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS09145 -2.4 -5.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS12055 -2.4 -12.6 phosphoenolpyruvate synthase compare
BPHYT_RS04290 -2.3 -1.7 glycosyl transferase family 2 compare
BPHYT_RS08615 -2.3 -1.4 hypothetical protein compare
BPHYT_RS14865 -2.2 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15415 -2.2 -11.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04385 -2.2 -2.3 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS04955 -2.1 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS30890 -2.1 -1.7 hypothetical protein compare
BPHYT_RS05010 -2.1 -4.8 RpiR family transcriptional regulator compare
BPHYT_RS03570 -2.1 -6.7 heat-inducible transcription repressor HrcA compare
BPHYT_RS04820 -2.0 -4.9 LysR family transcriptional regulator compare
BPHYT_RS15670 -2.0 -8.7 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS16975 -2.0 -5.1 shikimate 5-dehydrogenase compare
BPHYT_RS05030 -2.0 -4.3 sugar ABC transporter permease compare
BPHYT_RS17530 -1.9 -5.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04350 -1.9 -7.7 membrane protein compare
BPHYT_RS07325 -1.9 -1.3 GntR family transcriptional regulator compare
BPHYT_RS18760 -1.9 -3.3 flagellar biosynthesis protein FliT compare
BPHYT_RS01455 -1.8 -1.0 peptide deformylase compare
BPHYT_RS14900 -1.8 -2.5 prephenate dehydrogenase compare
BPHYT_RS03655 -1.8 -1.8 membrane protein compare
BPHYT_RS16135 -1.8 -5.8 ABC transporter ATP-binding protein compare
BPHYT_RS33990 -1.8 -1.0 ATPase compare
BPHYT_RS06075 -1.8 -6.9 hypothetical protein compare
BPHYT_RS06685 -1.8 -1.1 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS30040 -1.7 -1.4 hypothetical protein compare
BPHYT_RS05025 -1.7 -3.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS30010 -1.7 -1.7 cell division protein compare
BPHYT_RS09650 -1.7 -2.7 hypothetical protein compare
BPHYT_RS05020 -1.7 -5.3 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS06550 -1.7 -2.7 acetolactate synthase compare
BPHYT_RS14400 -1.7 -3.5 anti-sigma factor compare
BPHYT_RS29855 -1.6 -1.1 protein-tyrosine-phosphatase compare
BPHYT_RS35675 -1.6 -1.3 short-chain dehydrogenase compare
BPHYT_RS05040 -1.6 -3.7 sugar ABC transporter ATPase compare
BPHYT_RS33580 -1.6 -4.0 geranyltranstransferase compare
BPHYT_RS28660 -1.6 -1.4 polyvinylalcohol dehydrogenase compare
BPHYT_RS06070 -1.6 -9.2 cytochrome C compare
BPHYT_RS02660 -1.6 -1.2 membrane protein compare
BPHYT_RS12725 -1.6 -10.1 regulator compare
BPHYT_RS15615 -1.5 -3.6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS08765 -1.5 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS02650 -1.5 -1.4 membrane protein compare
BPHYT_RS03830 -1.4 -1.6 hypothetical protein compare
BPHYT_RS06530 -1.4 -1.6 membrane protein compare
BPHYT_RS02135 -1.4 -2.1 glyoxylate reductase compare
BPHYT_RS16430 -1.4 -9.6 cytochrome C compare
BPHYT_RS16435 -1.4 -7.4 alcohol dehydrogenase compare
BPHYT_RS16130 -1.4 -4.7 cation ABC transporter substrate-binding protein compare
BPHYT_RS29090 -1.4 -2.4 oxidoreductase compare
BPHYT_RS17760 -1.4 -3.5 ABC transporter permease compare
BPHYT_RS30935 -1.4 -1.5 MFS transporter compare
BPHYT_RS20095 -1.4 -0.7 transcriptional regulator compare
BPHYT_RS24925 -1.4 -1.4 cytochrome O ubiquinol oxidase compare
BPHYT_RS06400 -1.4 -4.5 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS23615 -1.4 -2.9 XRE family transcriptional regulator compare
BPHYT_RS29520 -1.4 -0.9 hypothetical protein compare
BPHYT_RS25800 -1.4 -1.5 sugar ABC transporter permease compare
BPHYT_RS02570 -1.4 -3.5 phosphocarrier protein HPr compare
BPHYT_RS02640 -1.3 -7.4 cytochrome C oxidase compare
BPHYT_RS26280 -1.3 -1.9 hypothetical protein compare
BPHYT_RS11170 -1.3 -1.2 hypothetical protein compare
BPHYT_RS00815 -1.3 -1.2 hypothetical protein compare
BPHYT_RS13130 -1.3 -1.6 metallophosphatase compare
BPHYT_RS17765 -1.3 -1.8 toluene ABC transporter ATP-binding protein compare
BPHYT_RS26005 -1.3 -1.8 MarR family transcriptional regulator compare
BPHYT_RS15650 -1.3 -8.2 quinolinate synthetase compare
BPHYT_RS06065 -1.3 -5.2 cytochrome C compare
BPHYT_RS23940 -1.2 -1.1 GntR family transcriptional regulator compare
BPHYT_RS05290 -1.2 -0.9 hypothetical protein compare
BPHYT_RS02955 -1.2 -3.9 formyltetrahydrofolate deformylase compare
BPHYT_RS28030 -1.2 -2.2 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS08950 -1.2 -3.0 aminotransferase compare
BPHYT_RS34665 -1.2 -2.0 hypothetical protein compare
BPHYT_RS02690 -1.2 -4.8 protoheme IX farnesyltransferase compare
BPHYT_RS03730 -1.2 -2.2 transcriptional repressor NrdR compare
BPHYT_RS08945 -1.2 -4.7 hypothetical protein compare
BPHYT_RS01965 -1.2 -1.5 tRNA-Ala compare
BPHYT_RS02285 -1.2 -3.5 cell division protein compare
BPHYT_RS02525 -1.2 -6.4 membrane protein compare
BPHYT_RS11745 -1.2 -1.2 (2Fe-2S)-binding protein compare
BPHYT_RS17100 -1.2 -4.4 RNA pyrophosphohydrolase compare
BPHYT_RS11705 -1.2 -1.4 hypothetical protein compare
BPHYT_RS10095 -1.2 -1.8 integrase compare
BPHYT_RS33070 -1.2 -1.8 haloacid dehalogenase compare
BPHYT_RS20845 -1.2 -1.1 peroxidase compare
BPHYT_RS07165 -1.1 -1.5 peptide ABC transporter permease compare
BPHYT_RS19435 -1.1 -2.4 16S rRNA methyltransferase compare
BPHYT_RS31305 -1.1 -1.4 alcohol dehydrogenase compare
BPHYT_RS28905 -1.1 -1.5 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS20835 -1.1 -2.1 pyridoxal 4-dehydrogenase compare
BPHYT_RS09105 -1.1 -5.0 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS14395 -1.1 -3.9 sugar dehydratase compare
BPHYT_RS30880 -1.1 -2.1 peptidase S13 compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Alanine in Burkholderia phytofirmans PsJN

For nitrogen source L-Alanine across organisms