Experiment set3IT055 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 8C2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF1088 -3.1 -1.0 FIG01045785: hypothetical protein compare
GFF2889 -2.7 -12.8 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
GFF873 -2.7 -1.4 hypothetical protein compare
GFF4158 -2.7 -1.2 tmRNA-binding protein SmpB compare
GFF3256 -2.4 -2.2 Succinyl-CoA synthetase, alpha subunit-related enzymes compare
GFF3196 -2.3 -1.4 Inner membrane protein YqjE compare
GFF1830 -1.9 -7.7 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF1343 -1.8 -1.1 Attachment invasion locus protein precursor compare
GFF3229 -1.8 -2.0 Secreted effector protein compare
GFF794 -1.8 -1.7 Phage holin compare
GFF180 -1.7 -0.7 FIG01045455: hypothetical protein compare
GFF3625 -1.7 -1.3 Transcriptional regulator, TetR family compare
GFF2573 -1.7 -2.6 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF1832 -1.7 -5.1 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF4621 -1.6 -1.8 putative inner membrane protein compare
GFF4060 -1.5 -0.8 putative cytoplasmic protein compare
GFF2878 -1.5 -7.1 Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-) compare
GFF1554 -1.5 -2.9 Putative transcriptional regulator compare
GFF1503 -1.5 -3.6 Lipoprotein nlpI precursor compare
GFF2887 -1.5 -6.9 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
GFF4126 -1.5 -0.8 FIG01047407: hypothetical protein compare
GFF3502 -1.5 -0.9 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF1079 -1.5 -1.0 Homoserine kinase (EC 2.7.1.39) compare
GFF3528 -1.4 -2.3 Integration host factor alpha subunit compare
GFF4358 -1.4 -1.1 FIG01200701: possible membrane protein compare
GFF4243 -1.4 -0.8 Probable secreted protein compare
GFF1801 -1.4 -0.9 hypothetical protein compare
GFF792 -1.4 -0.8 hypothetical protein compare
GFF3748 -1.4 -0.8 FIG002927: hypothetical protein compare
GFF3395 -1.4 -0.9 Putative outer membrane protein compare
GFF4387 -1.3 -2.1 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF4314 -1.3 -0.8 hypothetical protein compare
GFF1348 -1.3 -1.2 FIG01046723: hypothetical protein compare
GFF4774 -1.3 -1.1 FIG074102: hypothetical protein compare
GFF1584 -1.3 -1.6 Ribonucleotide reduction protein NrdI compare
GFF3603 -1.3 -1.1 Secretion system apparatus protein SsaM compare
GFF629 -1.3 -1.4 Shikimate kinase I (EC 2.7.1.71) compare
GFF201 -1.3 -1.2 Ferredoxin-like protein FixX compare
GFF2998 -1.3 -2.4 RNA-binding domain protein compare
GFF3515 -1.3 -1.2 FIG00637864: hypothetical protein compare
GFF2733 -1.3 -2.1 Membrane protein YciC, linked to IspA compare
GFF1884 -1.3 -1.3 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF2196 -1.3 -2.4 Transaldolase (EC 2.2.1.2) compare
GFF2466 -1.2 -0.9 Sialic acid utilization regulator, RpiR family compare
GFF925 -1.2 -1.4 hypothetical protein compare
GFF1559 -1.2 -1.8 hypothetical protein compare
GFF945 -1.2 -1.6 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF3362 -1.2 -1.6 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF1221 -1.2 -1.2 hypothetical protein compare
GFF3658 -1.2 -1.7 FIG01046987: hypothetical protein compare
GFF2201 -1.2 -1.9 putative DNA-binding protein compare
GFF1914 -1.2 -1.2 Cell division inhibitor compare
GFF2031 -1.2 -1.1 FIG01046611: hypothetical protein compare
GFF2692 -1.1 -2.6 Peptide transport system ATP-binding protein SapF compare
GFF2539 -1.1 -1.4 putative phage-related secreted protein compare
GFF2907 -1.1 -3.3 HTH-type transcriptional regulator hdfR compare
GFF3566 -1.1 -1.2 major outer membrane lipoprotein compare
GFF2873 -1.1 -0.6 hypothetical protein compare
GFF2389 -1.1 -1.2 Trk system potassium uptake protein TrkA compare
GFF1334 -1.1 -0.8 Uncharacterized protein YohL compare
GFF573 -1.1 -0.9 FIG01046423: hypothetical protein compare
GFF2758 -1.1 -1.0 FIG01045187: hypothetical protein compare
GFF1952 -1.1 -2.2 FIG001674: hypothetical protein compare
GFF1502 -1.1 -4.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF827 -1.1 -4.4 HflK protein compare
GFF1234 -1.1 -1.1 hypothetical protein compare
GFF3631 -1.1 -2.0 hypothetical protein compare
GFF1810 -1.0 -2.5 FIG01046382: hypothetical protein compare
GFF218 -1.0 -1.8 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF1863 -1.0 -0.9 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF4192 -1.0 -4.4 DNA-binding protein HU-alpha compare
GFF3570 -1.0 -0.7 FIG074102: hypothetical protein compare
GFF3830 -1.0 -0.6 Uncharacterized protein YehA precursor compare
GFF4481 -1.0 -2.8 PTS system, mannose-specific IIA component (EC 2.7.1.69) compare
GFF236 -1.0 -0.7 FIG00545237: hypothetical protein compare
GFF3071 -1.0 -1.2 hypothetical protein compare
GFF4239 -1.0 -0.9 Putative inner membrane protein compare
GFF3789 -1.0 -1.7 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) compare
GFF828 -1.0 -2.3 HflC protein compare
GFF3612 -1.0 -1.9 Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) compare
GFF3323 -1.0 -0.9 Putative curli production protein CsgC compare
GFF3490 -1.0 -4.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF276 -0.9 -2.8 Potassium uptake protein TrkH compare
GFF4371 -0.9 -2.4 methylated-DNA--protein-cysteine methyltransferase-related protein compare
GFF3706 -0.9 -1.1 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
GFF4337 -0.9 -1.2 FIG001943: hypothetical protein YajQ compare
GFF1681 -0.9 -1.4 Ferritin-like protein 2 compare
GFF992 -0.9 -0.9 hypothetical protein compare
GFF2119 -0.9 -1.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF1817 -0.9 -1.2 Cytochrome c-type protein NapC compare
GFF3986 -0.9 -3.5 FIG01220476: hypothetical protein compare
GFF2008 -0.9 -2.2 probable membrane protein yjeI compare
GFF2526 -0.9 -1.3 hypothetical protein compare
GFF1815 -0.9 -2.1 Electron transport complex protein RnfA compare
GFF2700 -0.9 -0.7 FIG01045186: hypothetical protein compare
GFF360 -0.9 -0.9 hypothetical protein compare
GFF4719 -0.9 -1.2 FIG01045287: hypothetical protein compare
GFF1219 -0.9 -1.1 FIG01048676: hypothetical protein compare
GFF713 -0.9 -0.5 FIG01047037: hypothetical protein compare
GFF2386 -0.9 -2.3 FIG004614: Putative cytoplasmic protein compare
GFF3148 -0.9 -2.4 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
GFF2500 -0.9 -1.6 C-terminal domain of CinA paralog, YdeJ compare
GFF2966 -0.9 -3.0 Transcriptional regulator NanR compare
GFF4309 -0.9 -3.3 Glyoxalase family protein compare
GFF1920 -0.9 -0.5 hypothetical protein compare
GFF2886 -0.9 -1.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF1912 -0.9 -2.0 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
GFF159 -0.8 -1.3 hypothetical protein compare
GFF2063 -0.8 -0.8 Inner membrane protein YfeZ compare
GFF2948 -0.8 -1.9 PTS system nitrogen-specific IIA component, PtsN compare
GFF3484 -0.8 -1.3 FIG002003: Protein YdjA compare
GFF3516 -0.8 -2.7 6-phosphofructokinase class II (EC 2.7.1.11) compare
GFF1940 -0.8 -0.7 Putative DNA-binding protein in cluster with Type I restriction-modification system compare
GFF760 -0.8 -2.2 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
GFF2906 -0.8 -2.4 Protein yifE compare
GFF1291 -0.8 -1.3 Phage minor tail protein #Phage minor tail protein T compare
GFF1747 -0.8 -0.9 putative inner membrane protein compare
GFF4222 -0.8 -2.2 putative permease compare
GFF4685 -0.8 -2.1 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
GFF4359 -0.8 -2.1 4-hydroxybenzoyl-CoA thioesterase family active site compare
GFF428 -0.8 -2.2 3-keto-L-gulonate 6-phosphate decarboxylase homolog compare
GFF4057 -0.8 -2.2 putative cytoplasmic protein compare
GFF32 -0.8 -0.6 Rho-specific inhibitor of transcription termination (YaeO) compare
GFF4738 -0.8 -1.6 Type III secretion system protein compare
GFF4138 -0.8 -1.0 PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69) compare
GFF4014 -0.8 -0.5 Flagellar protein FliJ compare
GFF3112 -0.8 -1.3 Putative membrane protein compare
GFF4374 -0.8 -0.6 LSU ribosomal protein L36p compare
GFF1415 -0.8 -0.5 UPF0337 protein yjbJ compare
GFF3635 -0.8 -1.6 Membrane-bound lysozyme inhibitor of c-type lysozyme compare
GFF684 -0.8 -1.0 Putative membrane protein compare
GFF4004 -0.8 -1.3 DsrB protein compare
GFF757 -0.8 -0.7 putative sensory transduction regulator compare
GFF1239 -0.8 -1.0 Gifsy-2 prophage lysozyme( EC:3.2.1.17 ) compare
GFF67 -0.8 -2.0 hypothetical protein compare
GFF3364 -0.8 -1.3 Flagellar hook-associated protein FlgL compare
GFF3450 -0.8 -2.3 Transcriptional regulator, MerR family compare
GFF4638 -0.8 -1.4 Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) compare
GFF826 -0.8 -2.9 GTP-binding protein HflX compare
GFF2310 -0.8 -1.8 hypothetical protein compare
GFF4405 -0.8 -2.4 HTH-type transcriptional regulator cueR compare
GFF3624 -0.8 -3.0 N-ethylmaleimide reductase (EC 1.-.-.-) compare
GFF3822 -0.7 -2.0 FIG00545237: hypothetical protein compare
GFF740 -0.7 -1.3 Putative LysR family transcriptional regulator compare
GFF3630 -0.7 -2.9 Putative membrane protein compare
GFF3433 -0.7 -0.9 FIG074102: hypothetical protein compare
GFF1981 -0.7 -0.7 FIG00638165: hypothetical protein compare
GFF2607 -0.7 -1.6 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF1612 -0.7 -1.0 FIG01046582: hypothetical protein compare
GFF191 -0.7 -0.9 ApaG protein compare
GFF4311 -0.7 -1.8 hypothetical protein compare
GFF2689 -0.7 -1.2 Peptide transport system permease protein SapB compare
GFF3469 -0.7 -2.3 hypothetical protein compare
GFF255 -0.7 -1.2 hypothetical protein compare
GFF4428 -0.7 -3.4 Allantoinase (EC 3.5.2.5) compare
GFF979 -0.7 -3.7 Uxu operon transcriptional regulator compare
GFF3546 -0.7 -2.7 Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-) compare
GFF4598 -0.7 -1.2 Uncharacterized protein ybfE compare
GFF3058 -0.7 -2.5 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
GFF93 -0.7 -1.7 Aspartate 1-decarboxylase (EC 4.1.1.11) compare
GFF4417 -0.7 -0.8 Methionine ABC transporter ATP-binding protein compare
GFF1270 -0.7 -2.4 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF4526 -0.7 -1.0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF1845 -0.7 -1.4 Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) compare
GFF1318 -0.7 -2.0 Lysophospholipid transporter LplT compare
GFF3926 -0.7 -2.7 UPF0265 protein YeeX compare
GFF2213 -0.7 -1.9 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF2880 -0.7 -2.5 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF4595 -0.7 -0.8 TcuR: regulates tcuABC genes used in utilization of tricarballylate compare
GFF2397 -0.7 -2.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF4575 -0.7 -1.3 Magnesium and cobalt efflux protein CorC compare
GFF3792 -0.7 -2.8 Pyridine nucleotide-disulphide oxidoreductase family protein compare
GFF2313 -0.7 -3.2 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF3139 -0.7 -3.0 Sensory histidine kinase QseC compare
GFF4291 -0.7 -2.1 Glucokinase, ROK family (EC 2.7.1.2) compare
GFF1433 -0.7 -0.8 Putative inner membrane or exported protein compare
GFF2684 -0.7 -1.2 Phage shock protein C compare
GFF2490 -0.7 -1.5 Starvation sensing protein RspB compare
GFF4430 -0.7 -2.8 Glycerate kinase (EC 2.7.1.31) compare
GFF716 -0.7 -2.0 L,D-transpeptidase YbiS compare
GFF1451 -0.7 -1.7 Putative membrane protein, clustering with ActP compare
GFF2114 -0.7 -2.2 probable lipoprotein compare
GFF2148 -0.7 -0.9 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF3183 -0.7 -0.7 FIG01046167: hypothetical protein compare
GFF1961 -0.7 -2.4 Phosphoglycerate transport system transcriptional regulatory protein PgtA compare
GFF1552 -0.7 -2.6 virulence protein compare
GFF4722 -0.6 -0.8 [NiFe] hydrogenase metallocenter assembly protein HypC compare
GFF246 -0.6 -2.1 putative protein PaaI, possibly involved in aromatic compounds catabolism compare
GFF2563 -0.6 -1.6 Outer membrane porin protein NmpC precursor compare
GFF4296 -0.6 -2.9 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
GFF1194 -0.6 -2.3 DNA replication protein compare
GFF1283 -0.6 -1.3 Phage capsid and scaffold compare
GFF3149 -0.6 -3.0 Type I secretion outer membrane protein, TolC precursor compare
GFF4573 -0.6 -2.2 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
GFF4628 -0.6 -1.0 putative glycosyltransferase compare
GFF1695 -0.6 -1.1 Cystine ABC transporter, ATP-binding protein compare
GFF3252 -0.6 -1.9 Inner membrane protein YccF compare
GFF365 -0.6 -0.8 Protein YicC compare
GFF2846 -0.6 -2.0 ProQ: influences osmotic activation of compatible solute ProP compare
GFF4335 -0.6 -2.0 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 8C2_phage across organisms