Experiment set3IT053 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI

200 most important genes:

  gene name fitness t score description  
GFF360 -2.9 -2.0 hypothetical protein compare
GFF3905 -2.8 -10.3 regulator of length of O-antigen component of lipopolysaccharide chains compare
GFF2968 -2.6 -7.3 Stringent starvation protein A compare
GFF3886 -2.4 -9.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF1808 -2.1 -5.3 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF824 -1.9 -3.7 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF4111 -1.9 -1.5 Curlin genes transcriptional activator compare
GFF3901 -1.8 -3.1 Phosphomannomutase (EC 5.4.2.8) compare
GFF4243 -1.8 -1.2 Probable secreted protein compare
GFF3054 -1.7 -8.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF4788 -1.7 -5.6 RNA polymerase sigma factor RpoS compare
GFF233 -1.6 -4.4 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF4733 -1.6 -1.1 Type III secretion transcriptional regulator HilC (= SirC) compare
GFF4350 -1.6 -0.9 hypothetical protein compare
GFF3642 -1.4 -3.2 Electron transport complex protein RnfE compare
GFF3887 -1.4 -5.3 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF2907 -1.4 -6.1 HTH-type transcriptional regulator hdfR compare
GFF2475 -1.4 -1.9 Ribonuclease III (EC 3.1.26.3) compare
GFF4601 -1.3 -4.8 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2758 -1.3 -1.4 FIG01045187: hypothetical protein compare
GFF389 -1.3 -2.8 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF2119 -1.3 -1.8 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF3888 -1.3 -3.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF34 -1.3 -2.0 FIG01280259: hypothetical protein compare
GFF2906 -1.3 -2.8 Protein yifE compare
GFF3603 -1.3 -2.1 Secretion system apparatus protein SsaM compare
GFF2517 -1.2 -1.0 [NiFe] hydrogenase nickel incorporation HybF-like protein compare
GFF466 -1.2 -3.3 Chaperone protein lpfB precursor compare
GFF3405 -1.2 -2.4 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
GFF1554 -1.2 -2.7 Putative transcriptional regulator compare
GFF4644 -1.2 -1.8 hypothetical protein compare
GFF1699 -1.2 -1.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF3212 -1.2 -1.1 FIG01046763: hypothetical protein compare
GFF1674 -1.2 -2.1 Universal stress protein C compare
GFF2949 -1.2 -4.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
GFF2433 -1.2 -5.2 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF716 -1.2 -5.0 L,D-transpeptidase YbiS compare
GFF1801 -1.1 -1.0 hypothetical protein compare
GFF366 -1.1 -5.3 Ribonuclease PH (EC 2.7.7.56) compare
GFF2973 -1.1 -5.0 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF3595 -1.1 -1.9 Secretion system effector SseG compare
GFF204 -1.1 -4.5 Electron transfer flavoprotein, beta subunit FixA compare
GFF2051 -1.1 -6.1 Predicted transcriptional regulator of pyridoxine metabolism compare
GFF4837 -1.1 -6.4 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF3149 -1.1 -6.6 Type I secretion outer membrane protein, TolC precursor compare
GFF4139 -1.1 -2.2 PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69) compare
GFF3566 -1.1 -2.0 major outer membrane lipoprotein compare
GFF1311 -1.0 -5.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
GFF1856 -1.0 -2.7 Pyrimidine deoxynucleoside triphosphate (dYTP) pyrophosphohydrolase YfoO compare
GFF4160 -1.0 -2.5 UPF0125 protein yfjF compare
GFF1114 -1.0 -1.7 FIG01200701: possible membrane protein compare
GFF1234 -1.0 -1.1 hypothetical protein compare
GFF218 -1.0 -2.3 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF2201 -1.0 -2.9 putative DNA-binding protein compare
GFF4789 -1.0 -4.0 Lipoprotein NlpD compare
GFF3229 -1.0 -0.7 Secreted effector protein compare
GFF1396 -1.0 -7.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3533 -1.0 -1.7 FIG00638687: hypothetical protein compare
GFF1572 -1.0 -3.1 Transcriptional regulator, ArsR family compare
GFF2573 -1.0 -2.3 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF4839 -1.0 -5.7 BarA sensory histidine kinase (= VarS = GacS) compare
GFF1815 -1.0 -1.7 Electron transport complex protein RnfA compare
GFF2838 -1.0 -1.5 Cold shock protein CspC compare
GFF2679 -1.0 -3.3 Transcriptional repressor protein TyrR compare
GFF1472 -1.0 -1.4 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF89 -0.9 -3.3 Poly(A) polymerase (EC 2.7.7.19) compare
GFF1619 -0.9 -4.0 Copper resistance protein D compare
GFF3410 -0.9 -3.9 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
GFF2880 -0.9 -4.5 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF1559 -0.9 -1.9 hypothetical protein compare
GFF4239 -0.9 -0.9 Putative inner membrane protein compare
GFF2620 -0.9 -0.9 FIG01045674: hypothetical protein compare
GFF1899 -0.9 -3.3 FIG00638298: membrane protein YfbV compare
GFF2394 -0.9 -2.6 Protein of unknown function Smg compare
GFF4232 -0.9 -2.7 Putative fimbrial chaperone compare
GFF146 -0.9 -1.7 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
GFF3826 -0.9 -1.6 FIG00510335: hypothetical protein compare
GFF4087 -0.9 -1.1 Mobile element protein compare
GFF2698 -0.9 -5.1 Exoribonuclease II (EC 3.1.13.1) compare
GFF3513 -0.9 -2.8 Putative membrane protein compare
GFF3323 -0.9 -1.1 Putative curli production protein CsgC compare
GFF1178 -0.9 -1.8 hypothetical protein compare
GFF744 -0.9 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF3643 -0.9 -4.5 Electron transport complex protein RnfG compare
GFF794 -0.9 -1.6 Phage holin compare
GFF1734 -0.9 -3.8 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
GFF2147 -0.9 -2.9 probable exported protein YPO3518 compare
GFF3331 -0.9 -2.4 Acidic protein msyB compare
GFF1806 -0.9 -2.2 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF1834 -0.9 -3.5 Putative dehydratase protein STM2273 compare
GFF3230 -0.9 -0.6 Transposase compare
GFF3409 -0.9 -1.7 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
GFF1591 -0.8 -1.6 Transcription repressor of tripartite multidrug resistance system compare
GFF2669 -0.8 -2.6 Putative outer membrane lipoprotein compare
GFF945 -0.8 -1.7 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF4086 -0.8 -1.7 hypothetical protein compare
GFF1038 -0.8 -1.9 FIG01200701: possible membrane protein compare
GFF1581 -0.8 -1.7 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
GFF2755 -0.8 -2.0 UPF0225 protein YchJ compare
GFF3987 -0.8 -1.8 FIG01045245: hypothetical protein compare
GFF180 -0.8 -0.5 FIG01045455: hypothetical protein compare
GFF1503 -0.8 -2.7 Lipoprotein nlpI precursor compare
GFF3063 -0.8 -3.4 FIG002060: uncharacterized protein YggL compare
GFF2249 -0.8 -1.3 Putative merR family bacterial regulatory protein compare
GFF2670 -0.8 -3.3 Putative HTH-type transcriptional regulator YjgJ, TetR family compare
GFF3789 -0.8 -2.2 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) compare
GFF87 -0.8 -1.3 C4-type zinc finger protein, DksA/TraR family compare
GFF1777 -0.8 -1.9 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) compare
GFF1675 -0.8 -2.9 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15) compare
GFF3515 -0.8 -1.1 FIG00637864: hypothetical protein compare
GFF3154 -0.8 -1.5 Zinc transporter ZupT compare
GFF1936 -0.8 -4.6 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) compare
GFF3031 -0.8 -4.5 FIG01048344: hypothetical protein compare
GFF4774 -0.8 -0.9 FIG074102: hypothetical protein compare
GFF2395 -0.8 -1.1 Similar to C-terminal Zn-finger domain of DNA topoisomerase I compare
GFF2526 -0.8 -1.4 hypothetical protein compare
GFF3012 -0.8 -3.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF2750 -0.8 -2.2 Thymidine kinase (EC 2.7.1.21) compare
GFF3874 -0.8 -1.2 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF1207 -0.8 -2.6 Probable regulatory protein compare
GFF3324 -0.8 -0.7 putative periplasmic protein compare
GFF2966 -0.7 -2.5 Transcriptional regulator NanR compare
GFF4643 -0.7 -1.0 hypothetical protein compare
GFF925 -0.7 -1.1 hypothetical protein compare
GFF3613 -0.7 -3.7 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps compare
GFF4537 -0.7 -1.4 CrcB protein compare
GFF157 -0.7 -1.1 Cell division protein MraZ compare
GFF2431 -0.7 -1.7 Chaperone protein HscA compare
GFF197 -0.7 -2.3 Probable secreted protein compare
GFF4380 -0.7 -3.3 Membrane fusion protein of RND family multidrug efflux pump compare
GFF1214 -0.7 -1.7 Kappa-fimbriae major subunit compare
GFF1303 -0.7 -0.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF482 -0.7 -1.9 FIG01047459: hypothetical protein compare
GFF3822 -0.7 -2.2 FIG00545237: hypothetical protein compare
GFF2839 -0.7 -1.9 FIG00638740: hypothetical protein compare
GFF2922 -0.7 -1.5 Transcription elongation factor GreA compare
GFF3743 -0.7 -2.1 FIG01046717: hypothetical protein compare
GFF4829 -0.7 -1.2 hypothetical protein compare
GFF454 -0.7 -2.4 Cold shock protein CspA compare
GFF2466 -0.7 -0.7 Sialic acid utilization regulator, RpiR family compare
GFF1779 -0.7 -2.6 Putative ABC transporter membrane protein compare
GFF2914 -0.7 -3.6 putative cytoplasmic protein compare
GFF133 -0.7 -2.2 Type IV fimbrial assembly protein PilC compare
GFF3042 -0.7 -2.5 hypothetical protein STY3242 compare
GFF2995 -0.7 -1.4 FIG01045243: hypothetical protein compare
GFF767 -0.7 -1.1 hypothetical protein compare
GFF4192 -0.7 -2.5 DNA-binding protein HU-alpha compare
GFF1219 -0.7 -1.8 FIG01048676: hypothetical protein compare
GFF1981 -0.7 -0.8 FIG00638165: hypothetical protein compare
GFF540 -0.7 -2.7 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
GFF1646 -0.7 -2.0 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 (nudB) compare
GFF4513 -0.7 -2.0 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
GFF4834 -0.7 -3.3 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) compare
GFF367 -0.7 -3.2 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF234 -0.7 -3.9 STMD1.44 protein compare
GFF374 -0.7 -3.2 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) compare
GFF3926 -0.7 -2.6 UPF0265 protein YeeX compare
GFF2719 -0.7 -1.7 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF4411 -0.7 -2.5 Putative NAD(P)-dependent oxidoreductase EC-YbbO compare
GFF3066 -0.7 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF3342 -0.7 -3.1 Dihydroorotase (EC 3.5.2.3) compare
GFF3249 -0.7 -1.4 Cell division inhibitor compare
GFF4459 -0.7 -3.0 Mobile element protein compare
GFF3274 -0.7 -2.9 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
GFF563 -0.6 -2.5 Putative inner membrane protein compare
GFF4535 -0.6 -2.7 Lipid A acylation protein PagP, palmitoyltransferase compare
GFF2657 -0.6 -1.8 Universal stress protein E compare
GFF3749 -0.6 -2.4 Nucleoid-associated protein NdpA compare
GFF3549 -0.6 -1.4 Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282) compare
GFF2539 -0.6 -1.1 putative phage-related secreted protein compare
GFF4275 -0.6 -3.4 Putative inner membrane protein compare
GFF1620 -0.6 -0.6 Copper resistance protein CopC compare
GFF4847 -0.6 -3.3 Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C) compare
GFF1013 -0.6 -3.2 PTS system, mannose-specific IIB component (EC 2.7.1.69) compare
GFF1281 -0.6 -1.0 Head decoration protein compare
GFF339 -0.6 -2.9 YqeJ protein compare
GFF998 -0.6 -2.8 FIG00638399: hypothetical protein compare
GFF607 -0.6 -0.8 hypothetical protein compare
GFF1610 -0.6 -0.8 hypothetical protein compare
GFF1348 -0.6 -0.9 FIG01046723: hypothetical protein compare
GFF214 -0.6 -2.8 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) compare
GFF4473 -0.6 -1.0 FIG01046818: hypothetical protein compare
GFF1338 -0.6 -1.9 Putative outer membrane protein compare
GFF3996 -0.6 -2.7 DNA-cytosine methyltransferase (EC 2.1.1.37) compare
GFF4797 -0.6 -1.9 Putative cytochrome oxidase subunit compare
GFF1715 -0.6 -2.4 Flavoprotein MioC compare
GFF2913 -0.6 -4.0 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF2319 -0.6 -3.1 FIG01046148: hypothetical protein compare
GFF1235 -0.6 -1.5 27.5 kDa virulence protein compare
GFF2537 -0.6 -0.9 hypothetical protein compare
GFF3990 -0.6 -0.7 hypothetical protein compare
GFF2244 -0.6 -1.3 FIG074102: hypothetical protein compare
GFF2196 -0.6 -1.7 Transaldolase (EC 2.2.1.2) compare
GFF4646 -0.6 -3.0 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF1618 -0.6 -2.8 FIG00923183: possible membrane protein YebY compare
GFF973 -0.6 -1.3 FIG074102: hypothetical protein compare
GFF3304 -0.6 -1.2 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
GFF975 -0.6 -1.1 FIG074102: hypothetical protein compare
GFF1737 -0.6 -1.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
GFF2016 -0.6 -3.7 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage FelixO1_phage (wt_new) across organisms