Experiment set3IT030 for Agrobacterium fabrum C58

Compare to:

3-aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1750 -6.0 -7.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu3706 -5.1 -11.4 D-3-phosphoglycerate dehydrogenase compare
Atu1359 -5.1 -2.2 dnaK deletion suppressor protein compare
Atu0017 -5.1 -4.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -5.0 -14.4 anthranilate phosphoribosyltransferase compare
Atu3707 -4.9 -5.8 phosphoserine aminotransferase compare
Atu3739 -4.9 -4.1 phosphoglycerate kinase compare
Atu0039 -4.6 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0035 -4.5 -11.2 phosphoenolpyruvate carboxykinase compare
Atu0346 -4.3 -5.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0030 -4.3 -2.6 phosphocarrier protein HPr compare
Atu1446 -4.1 -4.8 two component response regulator compare
Atu3469 -4.1 -4.0 phosphoglyceromutase compare
Atu2040 -4.1 -8.2 phosphoserine phosphatase compare
Atu1030 -4.0 -3.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1688 -4.0 -7.5 indole-3-glycerol-phosphate synthase compare
Atu0099 -3.9 -13.8 prephenate dehydratase compare
Atu1844 -3.9 -3.5 Phosphoribosylformylglycinamidine synthetase compare
Atu0679 -3.9 -7.9 ATP phosphoribosyltransferase compare
Atu0043 -3.9 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -3.8 -10.5 histidinol dehydrogenase compare
Atu2289 -3.7 -18.4 anthranilate synthase component I and II compare
Atu3740 -3.6 -11.6 fructose bisphosphate aldolase compare
Atu0399 -3.6 -7.3 dihydroorotase compare
Atu1620 -3.6 -13.7 triosephosphate isomerase compare
Atu0038 -3.6 -6.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4505 -3.6 -12.3 LacI family transcriptional regulator compare
Atu0041 -3.6 -4.2 glutamine amidotransferase compare
Atu2791 -3.6 -10.6 3-isopropylmalate dehydrogenase compare
Atu2718 -3.5 -9.5 homoserine O-succinyltransferase compare
Atu3783 -3.5 -18.8 glutamate synthase subunit beta compare
Atu2264 -3.4 -17.4 2-isopropylmalate synthase compare
Atu0678 -3.4 -7.5 histidyl-tRNA synthetase compare
Atu2650 -3.4 -16.8 glycerol-3-phosphate dehydrogenase compare
Atu3293 -3.4 -11.7 D-amino acid dehydrogenase small subunit compare
Atu2036 -3.4 -16.0 acetolactate synthase III, large subunit compare
Atu3885 -3.4 -11.5 inositol monophosphatase compare
Atu1588 -3.4 -11.0 homoserine dehydrogenase compare
Atu2790 -3.3 -4.4 3-isopropylmalate dehydratase, small subunit compare
Atu1140 -3.3 -7.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2709 -3.3 -20.2 3-isopropylmalate dehydratase, large subunit compare
Atu1850 -3.2 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu1308 -3.1 -7.4 aspartate carbamoyl transferase catalytic subunit compare
Atu3754 -3.1 -7.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1075 -3.1 -8.5 amidophosphoribosyltransferase compare
Atu0298 -3.0 -7.5 orotidine 5 compare
Atu2015 -3.0 -15.7 aminotransferase compare
Atu3329 -3.0 -11.2 beta alanine--pyruvate transaminase conserved
Atu4674 -3.0 -15.5 GntR family transcriptional regulator compare
Atu0040 -3.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3328 -2.9 -9.5 aldehyde dehydrogenase compare
Atu0432 -2.8 -9.7 O-succinylhomoserine sulfhydrylase compare
Atu3784 -2.8 -21.5 glutamate synthase large subunit compare
Atu1205 -2.8 -16.0 threonine dehydratase compare
Atu0332 -2.7 -12.9 RNA polymerase sigma-54 factor compare
Atu2747 -2.7 -14.4 hypothetical protein compare
Atu1445 -2.7 -9.4 two component sensor kinase compare
Atu1141 -2.7 -8.3 Phosphoribosylglycinamide synthetase compare
Atu2209 -2.6 -5.5 pyrroline-5-carboxylate reductase compare
Atu3291 -2.6 -5.9 Lpr family transcriptional regulator compare
Atu1307 -2.6 -8.3 dihydroorotase compare
Atu2115 -2.6 -11.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1845 -2.5 -5.4 phosphoribosylformylglycinamidine synthase I compare
Atu3755 -2.4 -5.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0647 -2.4 -8.1 phosphoribosylamine--glycine ligase compare
Atu0876 -2.4 -3.1 superoxide dismutase compare
Atu0400 -2.3 -5.7 orotate phosphoribosyltransferase compare
Atu1686 -2.2 -14.7 peptidyl-prolyl cis-trans isomerse D compare
Atu3292 -2.2 -10.5 alanine racemase compare
Atu0486 -2.1 -7.3 dihydroorotate dehydrogenase compare
Atu4173 -1.9 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
Atu1456 -1.9 -9.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3298 -1.9 -12.2 C4-dicarboxylate transporter DctA compare
Atu3296 -1.9 -12.1 two component response regulator for C4-dicarboxylate transport compare
Atu3297 -1.8 -10.8 two component sensor kinase for C4-dicarboxylate transport compare
Atu0769 -1.8 -3.0 protoheme IX farnesyltransferase compare
Atu2640 -1.8 -6.0 hypothetical protein compare
Atu1454 -1.8 -9.8 siroheme synthase compare
Atu1457 -1.7 -2.4 hypothetical protein compare
Atu1589 -1.6 -6.1 aminotransferase, class I compare
Atu3908 -1.4 -9.4 GntR family transcriptional regulator compare
Atu5451 -1.4 -1.1 hypothetical protein compare
Atu2155 -1.4 -10.9 methionine synthase compare
Atu3483 -1.4 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1455 -1.4 -4.9 hypothetical protein compare
Atu4711 -1.4 -6.0 two component sensor kinase compare
Atu2376 -1.4 -1.4 hypothetical protein compare
Atu3482 -1.4 -4.8 pantoate--beta-alanine ligase compare
Atu3913 -1.4 -7.2 biotin carboxylase compare
Atu3289 -1.3 -4.3 thiamine-phosphate pyrophosphorylase compare
Atu3912 -1.3 -6.7 hypothetical protein compare
Atu6114 -1.3 -1.4 hypothetical protein compare
Atu2548 -1.2 -8.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4773 -1.2 -2.0 two component response regulator compare
Atu3290 -1.2 -6.3 phosphomethylpyrimidine kinase compare
Atu0723 -1.2 -2.1 FAD dependent oxidoreductase compare
Atu0029 -1.1 -5.0 S-adenosylhomocysteine hydrolase compare
Atu3730 -1.1 -1.5 hypothetical protein compare
Atu5449 -1.1 -2.8 heat-shock protein compare
Atu0953 -1.1 -1.4 hypothetical protein compare
Atu3663 -1.1 -1.7 hypothetical protein compare
Atu8099 -1.1 -2.0 hypothetical protein compare
Atu1149 -1.1 -1.9 adenylate cyclase compare
Atu1685 -1.0 -1.2 hypothetical protein compare
Atu1339 -1.0 -4.3 ribonuclease E compare
Atu3763 -1.0 -2.0 hypothetical protein compare
Atu3288 -1.0 -4.8 hydroxyethylthiazole kinase compare
Atu0354 -1.0 -2.4 ferric uptake regulator compare
Atu0031 -1.0 -1.5 PTS system, IIA component compare
Atu1578 -1.0 -4.8 ABC transporter, membrane spanning protein (amino acid) compare
Atu8115 -1.0 -5.1 Hypothetical Protein compare
Atu1579 -1.0 -5.5 ABC transporter, membrane spanning protein (amino acid) compare
Atu0641 -1.0 -3.3 hypothetical protein compare
Atu0941 -1.0 -1.1 hypothetical protein compare
Atu3496 -1.0 -1.8 hypothetical protein compare
Atu1464 -1.0 -4.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu3750 -1.0 -3.0 thiamine-phosphate pyrophosphorylase compare
Atu2439 -0.9 -1.5 hypothetical protein compare
Atu2424 -0.9 -3.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1462 -0.9 -6.5 glycine cleavage system protein P2 compare
Atu3731 -0.9 -5.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu4702 -0.9 -3.9 GntR family transcriptional regulator compare
Atu1580 -0.9 -4.7 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu2684 -0.9 -1.2 hypothetical protein compare
Atu0190 -0.8 -4.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2569 -0.8 -6.0 thiamine biosynthesis protein compare
Atu3397 -0.8 -5.6 hypothetical protein compare
Atu1577 -0.8 -3.4 ABC transporter, substrate binding protein (amino acid) compare
Atu2017 -0.8 -1.2 hypothetical protein compare
Atu4217 -0.8 -2.0 TetR family transcriptional regulator compare
Atu1372 -0.8 -4.5 hypothetical protein compare
Atu2207 -0.8 -2.2 two component sensor kinase compare
Atu1774 -0.8 -4.6 ABC transporter, substrate binding protein (peptide) compare
Atu0361 -0.8 -1.8 transcriptional regulator compare
Atu1503 -0.8 -1.2 hypothetical protein compare
Atu1364 -0.8 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0422 -0.8 -1.4 ABC transporter, membrane spanning protein compare
Atu1163 -0.8 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0533 -0.8 -1.1 putative inhibitor of septum formation compare
Atu0189 -0.8 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0986 -0.8 -1.3 hypothetical protein compare
Atu8138 -0.8 -1.5 hypothetical protein compare
Atu2710 -0.8 -3.9 hypothetical protein compare
Atu1254 -0.7 -1.6 transcriptional regulator, ArsR family compare
Atu3561 -0.7 -1.4 hypothetical protein compare
Atu6159 -0.7 -2.0 hypothetical protein compare
Atu3012 -0.7 -1.0 hypothetical protein compare
Atu0566 -0.7 -1.7 hypothetical protein compare
Atu2428 -0.7 -4.5 exopolysaccharide production protein PssB compare
Atu3759 -0.7 -1.4 hypothetical protein compare
Atu1463 -0.7 -4.4 glycine cleavage system component H compare
Atu2427 -0.7 -3.6 ABC transporter, membrane spanning protein compare
Atu0654 -0.7 -3.5 transcriptional regulator, LysR family compare
Atu5007 -0.7 -2.6 santhopine-responsive transcriptional repressor compare
Atu0971 -0.7 -2.5 two component sensor kinase compare
Atu3075 -0.7 -3.3 TetR family transcriptional regulator compare
Atu8156 -0.7 -1.8 hypothetical protein compare
Atu1439 -0.7 -1.2 hypothetical protein compare
Atu4875 -0.7 -3.5 hypothetical protein compare
Atu3910 -0.7 -2.3 LamB/YcsF family protein compare
Atu2057 -0.6 -2.1 DNA helicase II compare
Atu5010 -0.6 -1.1 hypothetical protein compare
Atu0142 -0.6 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu1748 -0.6 -4.5 NIFU-like protein compare
Atu1327 -0.6 -2.2 NADH-ubiquinone oxidoreductase compare
Atu3495 -0.6 -4.0 diguanylate cyclase compare
Atu2305 -0.6 -3.3 MFS permease compare
Atu4166 -0.6 -1.9 UDP-glucose 4-epimerase compare
Atu4677 -0.6 -1.0 hypothetical protein compare
Atu1592 -0.6 -3.2 hypothetical protein compare
Atu0141 -0.6 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu0837 -0.6 -3.4 transcriptional regulator, MarR family compare
Atu5473 -0.6 -2.0 D-alanine aminotransferase compare
Atu4407 -0.6 -2.1 periplasmic nitrate reductase, NapD protein compare
Atu2728 -0.6 -2.7 beta (1-->2) glucan export ATP-binding protein compare
Atu5427 -0.6 -1.5 hypothetical protein compare
Atu6108 -0.6 -1.6 alkylphosphonate uptake protein compare
Atu0188 -0.6 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4096 -0.6 -3.5 nicotinate-nucleotide pyrophosphorylase compare
Atu5160 -0.6 -1.1 transcriptional regulator protein compare
Atu2384 -0.6 -1.9 transcriptional regulator, TetR family compare
Atu4888 -0.6 -2.4 hypothetical protein compare
Atu2426 -0.6 -3.4 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu4873 -0.6 -3.2 TetR family transcriptional regulator compare
Atu4643 -0.5 -1.9 hypothetical protein compare
Atu3485 -0.5 -4.1 short chain dehydrogenase compare
Atu1848 -0.5 -2.7 transcriptional regulator, GntR family compare
Atu1184 -0.5 -1.2 hypothetical protein compare
Atu0636 -0.5 -3.1 hypothetical protein compare
Atu4228 -0.5 -2.7 formyl-methanofuran dehydrogenase compare
Atu8039 -0.5 -3.0 hypothetical protein compare
Atu2800 -0.5 -1.9 precorrin-3B C17-methyltransferase compare
Atu0883 -0.5 -1.1 hypothetical protein compare
Atu2200 -0.5 -1.6 cold shock protein compare
Atu4176 -0.5 -2.9 hypothetical protein compare
Atu6146 -0.5 -1.9 conserved hypothetical protein compare
Atu5512 -0.5 -1.8 hypothetical protein compare
Atu4867 -0.5 -3.2 hypothetical protein compare
Atu1804 -0.5 -2.9 hypothetical protein compare
Atu8055 -0.5 -1.5 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source 3-aminobutyric acid in Agrobacterium fabrum C58

For nitrogen source 3-aminobutyric acid across organisms