Experiment set3IT009 for Agrobacterium fabrum C58

Compare to:

Urea nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Atu6131 +1.4 6.3 TraR Antiactivator compare
Atu5513 +1.3 2.3 cold shock protein compare
Atu6138 +1.2 3.2 Repressor of the acc and arc operons compare
Atu4530 +1.1 3.6 TetR family transcriptional regulator compare
Atu8018 +0.9 1.4 hypothetical protein compare
Atu0119 +0.9 1.8 hypothetical protein compare
Atu6106 +0.9 2.2 conserved hypothetical protein compare
Atu5157 +0.9 2.9 hypothetical protein compare
Atu1225 +0.8 1.1 hypothetical protein compare
Atu1127 +0.8 2.2 molybdopterin converting factor small subunit compare
Atu1818 +0.7 2.3 hypothetical protein compare
Atu1223 +0.7 1.3 hypothetical protein compare
Atu6195 +0.7 1.3 conserved hypothetical protein compare
Atu5125 +0.7 2.4 GntR family transcriptional regulator compare
Atu3603 +0.7 2.0 two component response regulator compare
Atu4671 +0.6 2.3 response regulator compare
Atu0580 +0.6 1.7 flagellar biosynthetic protein compare
Atu6179 +0.6 1.8 virA/G regulated protein compare
Atu6033 +0.6 2.0 conjugal transfer protein compare
Atu2657 +0.6 2.3 hypothetical protein compare
Atu2620 +0.6 1.2 hypothetical protein compare
Atu3510 +0.6 2.1 amidohydrolase compare
Atu5489 +0.6 1.0 hypothetical protein compare
Atu1847 +0.6 1.2 hypothetical protein compare
Atu2249 +0.5 1.0 hypothetical protein compare
Atu1830 +0.5 2.3 bacterioferritin comigratory protein compare
Atu0865 +0.5 3.2 transcriptional regulator, AraC family compare
Atu1683 +0.5 1.8 hypothetical protein compare
Atu8023 +0.5 1.3 hypothetical protein compare
Atu3757 +0.5 1.9 hypothetical protein compare
Atu0435 +0.5 1.5 tRNA-Gly compare
Atu2041 +0.5 1.3 acetyltransferase compare
Atu3124 +0.5 2.2 hypothetical protein compare
Atu4338 +0.5 2.5 hypothetical protein compare
Atu5107 +0.5 1.0 hypothetical protein compare
Atu0812 +0.5 1.8 hypothetical protein compare
Atu4223 +0.5 1.6 sarcosine oxidase delta subunit compare
Atu2282 +0.5 2.1 thymidine kinase compare
Atu2794 +0.5 1.8 uroporphyrin-III C-methyltransferase compare
Atu2324 +0.5 1.8 ureidoglycolate hydrolase compare
Atu0572 +0.5 1.9 hypothetical protein compare
Atu0940 +0.5 1.6 PemK protein compare
Atu2662 +0.5 0.9 acetyltransferase compare
Atu0152 +0.5 1.5 hypothetical protein compare
Atu1968 +0.5 1.2 hypothetical protein compare
Atu5183 +0.5 1.4 hypothetical protein compare
Atu2192 +0.4 1.0 hypothetical protein compare
Atu8162 +0.4 1.1 hypothetical protein compare
Atu0507 +0.4 2.7 potassium efflux system protein compare
Atu0467 +0.4 1.8 hypothetical protein compare
Atu0545 +0.4 2.8 flagella associated protein compare
Atu6181 +0.4 1.4 virA/G regulated topoisomerase compare
Atu2406 +0.4 0.8 hypothetical protein compare
Atu0905 +0.4 1.6 dnaK suppressor protein compare
Atu6053 +0.4 1.4 conserved hypothetical protein compare
Atu4532 +0.4 2.6 shikimate 5-dehydrogenase compare
Atu5112 +0.4 1.4 hypothetical protein compare
Atu0795 +0.4 1.4 hypothetical protein compare
Atu2669 +0.4 1.8 RhtB family transporter compare
Atu6107 +0.4 1.3 hypothetical protein compare
Atu5492 +0.4 1.5 hypothetical protein compare
Atu2343 +0.4 1.9 acetyltransferase compare
Atu8035 +0.4 1.1 hypothetical protein compare
Atu6109 +0.4 1.3 conserved hypothetical protein compare
Atu1525 +0.4 2.0 hypothetical protein compare
Atu0547 +0.4 2.3 flagellar protein compare
Atu6126 +0.4 1.8 conjugal transfer protein, Dtr system compare
Atu6165 +0.4 0.4 hypothetical protein compare
Atu1189 +0.4 1.7 hypothetical protein compare
Atu1911 +0.4 2.1 hypothetical protein compare
Atu1906 +0.4 1.6 ABC transporter, membrane spanning protein compare
Atu0495 +0.4 2.1 hypothetical protein compare
Atu1701 +0.4 1.1 protein-L-isoaspartate O-methyltransferase compare
Atu0086 +0.4 0.7 ribosome-binding factor A compare
Atu4159 +0.4 1.6 AsnC family transcriptional regulator compare
Atu1629 +0.4 0.7 transcriptional regulator, ArsR family compare
Atu2029 +0.4 1.6 hypothetical protein compare
Atu3653 +0.4 2.1 hypothetical protein compare
Atu2151 +0.4 2.5 alcohol dehydrogenase compare
Atu6130 +0.4 1.3 conserved hypothetical protein compare
Atu3107 +0.4 2.2 LacI family transcriptional regulator compare
Atu1980 +0.4 1.2 hypothetical protein compare
Atu3655 +0.4 2.7 antioxidant protein compare
Atu3581 +0.4 2.5 propionyl-coenzyme A carboxylase, alpha polypeptide compare
Atu8116 +0.4 1.9 hypothetical protein compare
Atu6032 +0.4 1.6 conjugal transfer protein compare
Atu3562 +0.4 1.8 hypothetical protein compare
Atu3299 +0.4 0.8 hypothetical protein compare
Atu4679 +0.4 2.5 amino acid ABC transporter permease compare
Atu1965 +0.4 2.1 UDP-glucose 4-epimerase compare
Atu1570 +0.4 0.5 hypothetical protein compare
Atu1423 +0.4 2.3 hypothetical protein compare
Atu0976 +0.4 1.3 cycL protein compare
Atu3428 +0.4 2.1 hypothetical protein compare
Atu0873 +0.4 2.3 transcriptional regulator, LysR family compare
Atu0730 +0.3 1.8 hypothetical protein compare
Atu3661 +0.3 2.5 hypothetical protein compare
Atu1953 +0.3 2.0 hypothetical protein compare
Atu3001 +0.3 1.0 hypothetical protein compare
Atu0929 +0.3 2.6 amide hydrolase compare
Atu0026 +0.3 0.6 hypothetical protein compare
Atu1252 +0.3 1.2 hypothetical protein compare
Atu2382 +0.3 2.0 hypothetical protein compare
Atu1999 +0.3 2.4 hypothetical protein compare
Atu2270 +0.3 0.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu1591 +0.3 1.2 hypothetical protein compare
Atu3569 +0.3 1.4 hypothetical protein compare
Atu2461 +0.3 2.0 hypothetical protein compare
Atu8053 +0.3 0.7 hypothetical protein compare
Atu3331 +0.3 1.2 hypothetical protein compare
Atu5102 +0.3 1.2 hypothetical protein compare
Atu3226 +0.3 2.0 GntR family transcriptional regulator compare
Atu0269 +0.3 1.7 exodeoxyribonuclease VII large subunit compare
Atu0703 +0.3 1.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3873 +0.3 1.6 hypothetical protein compare
Atu2325 +0.3 1.8 hypothetical protein compare
Atu0956 +0.3 1.1 phage prohead protease compare
Atu1314 +0.3 1.4 transcriptional regulator, TetR family compare
Atu8168 +0.3 0.8 hypothetical protein compare
Atu1559 +0.3 1.6 hypothetical protein compare
Atu3421 +0.3 2.1 hypothetical protein compare
Atu5106 +0.3 0.8 DNA binding protein compare
Atu3578 +0.3 1.3 glycerol-3-phosphate dehydrogenase compare
Atu5497 +0.3 1.2 hypothetical protein compare
Atu8046 +0.3 0.5 hypothetical protein compare
Atu1692 +0.3 1.4 hypothetical protein compare
Atu4677 +0.3 0.6 hypothetical protein compare
Atu3329 +0.3 2.1 beta alanine--pyruvate transaminase compare
Atu1888 +0.3 2.4 two component sensor kinase compare
Atu4446 +0.3 2.1 hypothetical protein compare
Atu3642 +0.3 2.0 vgrG protein compare
Atu4232 +0.3 1.7 GntR family transcriptional regulator compare
Atu2727 +0.3 1.8 transcriptional regulator, LuxR family compare
Atu6178 +0.3 1.7 two component response regulator compare
Atu2328 +0.3 2.0 hypothetical protein compare
Atu3183 +0.3 0.4 hypothetical protein compare
Atu2433 +0.3 0.6 hypothetical protein compare
Atu1007 +0.3 1.2 hypothetical protein compare
Atu3644 +0.3 2.0 hypothetical protein compare
Atu2220 +0.3 1.8 hypothetical protein compare
Atu3563 +0.3 1.6 transcription elongation factor regulatory protein compare
Atu0504 +0.3 2.1 hypothetical protein compare
Atu1569 +0.3 2.4 cytochrome P450 compare
Atu0765 +0.3 1.7 TldD compare
Atu1351 +0.3 1.3 hypothetical protein compare
Atu0523 +0.3 2.5 flagellar M-ring protein compare
Atu5054 +0.3 1.4 hypothetical protein compare
Atu1213 +0.3 0.8 hypothetical protein compare
Atu1068 +0.3 1.3 hypothetical protein compare
Atu1654 +0.3 1.6 nitroreductase compare
Atu5421 +0.3 1.6 ABC transporter membrane spanning protein (putrescine) compare
Atu4737 +0.3 1.2 hypothetical protein compare
Atu0578 +0.3 2.0 FlbT post-transcriptional regulator of flagellin compare
Atu3511 +0.3 1.3 glutaredoxin compare
Atu1754 +0.3 0.9 hypothetical protein compare
Atu1387 +0.3 1.2 transcriptional regulator, GntR family compare
Atu4093 +0.3 1.4 hypothetical protein compare
Atu1725 +0.3 1.2 hypothetical protein compare
Atu5540 +0.3 0.2 hypothetical protein compare
Atu8032 +0.3 0.9 hypothetical protein compare
Atu3323 +0.3 1.7 HlyD family secretion protein compare
Atu2582 +0.3 1.7 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1405 +0.3 1.5 transcriptional regulator, GntR family compare
Atu3365 +0.3 1.7 hypothetical protein compare
Atu0546 +0.3 1.8 flagellar biosynthetic protein compare
Atu0570 +0.3 2.5 Chemotaxis protein compare
Atu2121 +0.3 2.2 glycosyl hydrolase/lysozyme compare
Atu0564 +0.3 2.0 flagellar biosynthetic protein compare
Atu5061 +0.3 0.9 glycerophosphoryl diester phosphodiesterase compare
Atu8033 +0.3 1.5 hypothetical protein compare
Atu2272 +0.3 1.8 hypothetical protein compare
Atu8155 +0.3 1.6 hypothetical protein compare
Atu1287 +0.3 1.0 hypothetical protein compare
Atu0557 +0.3 2.4 flagellum-specific ATP synthase compare
Atu1415 +0.3 1.6 3-hydroxyacyl-CoA dehydrogenase type II compare
Atu6173 +0.3 0.9 component of type IV secretion system compare
Atu5119 +0.3 1.8 two component response regulator compare
Atu2061 +0.3 2.0 hydrolase compare
Atu3537 +0.3 1.3 hypothetical protein compare
Atu8025 +0.3 0.6 hypothetical protein compare
Atu3651 +0.3 2.1 hypothetical protein compare
Atu1138 +0.3 1.4 protease VII precursor compare
Atu1954 +0.3 2.0 hypothetical protein compare
Atu2496 +0.3 2.0 nitroreducatase compare
Atu6014 +0.3 1.3 6b protein compare
Atu3618 +0.3 1.8 hypothetical protein compare
Atu6045 +0.3 0.4 replication protein C compare
Atu3182 +0.3 1.0 hypothetical protein compare
Atu1184 +0.3 0.9 hypothetical protein compare
Atu3480 +0.3 1.7 hydroxymethylglutaryl-CoA lyase compare
Atu0531 +0.3 1.8 hypothetical protein compare
Atu0381 +0.3 2.0 hypothetical protein compare
Atu0280 +0.3 0.6 hypothetical protein compare
Atu0983 +0.3 1.1 hypothetical protein compare
Atu3913 +0.3 1.7 biotin carboxylase compare
Atu1302 +0.3 1.1 hypothetical protein compare
Atu4582 +0.3 1.5 ferredoxin compare
Atu0756 +0.3 1.4 phosphoglycerate mutase compare
Atu4641 +0.3 1.0 LysR family transcriptional regulator compare
Atu5172 +0.3 1.2 type IV secretion protein AvhB11 compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Urea in Agrobacterium fabrum C58

For nitrogen source Urea across organisms