Experiment set38IT007 for Pseudomonas putida KT2440

Compare to:

R2A control

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +1.8 16.4 Sensor protein GacS compare
PP_4099 +1.7 14.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4389 +1.2 7.3 Flagellar basal-body rod modification protein FlgD compare
PP_4199 +1.2 1.8 putative Lipoprotein compare
PP_4355 +1.2 3.2 flagellar export apparatus subunit compare
PP_1410 +1.2 1.9 conserved protein of unknown function compare
PP_1301 +1.0 5.9 quality control serine endoprotease DegS compare
PP_0948 +1.0 2.1 Phosphocarrier protein HPr compare
PP_4268 +1.0 2.4 nucleoid-associated broad specificity regulator compare
PP_4391 +1.0 4.6 flagellar basal-body rod protein FlgB compare
PP_4957 +1.0 2.6 conserved protein of unknown function compare
PP_4910 +1.0 2.2 conserved protein of unknown function compare
PP_0919 +1.0 2.5 conserved protein of unknown function compare
PP_1269 +1.0 1.7 Universal stress protein family compare
PP_4365 +0.9 5.5 Flagellar protein FliJ compare
PP_4390 +0.9 5.2 flagellar basal-body rod protein FlgC compare
PP_4396 +0.9 2.8 conserved protein of unknown function compare
PP_4532 +0.9 1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3916 +0.9 1.9 conserved protein of unknown function compare
PP_2764 +0.9 2.1 FMN reductase (NADPH) compare
PP_4366 +0.9 6.6 flagellum-specific ATP synthase compare
PP_3808 +0.9 2.3 Antibiotic synthesis protein MbtH compare
PP_5505 +0.8 3.6 conserved transmembrane protein of unknown function compare
PP_2330 +0.8 3.1 conserved protein of unknown function compare
PP_4701 +0.8 1.3 glucose-6-phosphate isomerase compare
PP_4361 +0.8 3.5 Flagellar hook-length control protein FliK compare
PP_3233 +0.8 3.4 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_4470 +0.8 2.7 putative transcriptional regulator (Arc domain-containing) compare
PP_4171 +0.8 7.6 conserved exported protein of unknown function compare
PP_5546 +0.8 1.9 conserved protein of unknown function compare
PP_2615 +0.8 2.5 hemolysin-coregulated protein compare
PP_4388 +0.8 6.5 Flagellar hook protein FlgE compare
PP_0677 +0.8 3.0 putative Lipoprotein compare
PP_4369 +0.8 4.6 Flagellar M-ring protein compare
PP_0025 +0.8 1.2 hypothetical protein compare
PP_5495 +0.8 1.1 protein of unknown function compare
PP_0355 +0.8 2.5 Response regulator compare
PP_4344 +0.8 5.4 flagellar export pore protein compare
PP_5324 +0.7 1.1 Response regulator compare
PP_1690 +0.7 2.1 conserved protein of unknown function compare
PP_4341 +0.7 4.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_3333 +0.7 2.0 conserved protein of unknown function compare
PP_t13 +0.7 1.2 tRNA-Lys compare
PP_1142 +0.7 1.1 conserved protein of unknown function compare
PP_0429 +0.7 3.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2307 +0.7 2.6 conserved protein of unknown function compare
PP_0022 +0.7 1.1 hypothetical protein compare
PP_1562 +0.7 1.2 putative Phage terminase, small subunit compare
PP_0781 +0.7 2.2 conserved protein of unknown function compare
PP_1261 +0.7 1.6 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_0916 +0.7 2.0 Amino acid transporter LysE compare
PP_2210 +0.7 2.4 LysR family transcriptional regulator compare
PP_4073 +0.7 1.3 conserved exported protein of unknown function compare
PP_3328 +0.7 1.0 putative Ring-cleaving dioxygenase compare
PP_5491 +0.7 1.0 conserved protein of unknown function with SEC-C motif domain compare
PP_2404 +0.7 2.2 conserved exported protein of unknown function compare
PP_0040 +0.6 1.6 hypothetical protein compare
PP_0821 +0.6 2.8 conserved exported protein of unknown function compare
PP_4904 +0.6 4.0 Flagellar motor rotation protein compare
PP_4444 +0.6 2.5 transposase compare
PP_5381 +0.6 2.7 hypothetical protein compare
PP_2976 +0.6 1.3 putative transposase compare
PP_1199 +0.6 3.0 toxin-antitoxin system, higB toxin like compare
PP_3219 +0.6 2.5 putative Alkansulfonate monooxygenase compare
PP_4905 +0.6 3.2 Flagellar motor rotation protein compare
PP_4354 +0.6 1.6 flagellar export apparatus subunit compare
PP_4378 +0.6 5.0 flagellin, filament structural protein compare
PP_2137 +0.6 2.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_4373 +0.6 4.5 Transcriptional regulator FleQ compare
PP_1731 +0.6 1.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1669 +0.6 2.7 NLP/P60 family protein compare
PP_5701 +0.6 1.6 conserved protein of unknown function compare
PP_2318 +0.6 2.4 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_0425 +0.6 1.5 conserved protein of unknown function compare
PP_4372 +0.6 3.4 Sensory box histidine kinase FleS compare
PP_3315 +0.6 2.3 conserved membrane protein of unknown function compare
PP_5644 +0.6 1.3 conserved membrane protein of unknown function compare
PP_5575 +0.6 1.6 conserved protein of unknown function compare
PP_4353 +0.6 2.9 Flagellar biosynthetic protein fliR compare
PP_3164 +0.6 1.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_0640 +0.6 1.9 conserved protein of unknown function compare
PP_4394 +0.6 3.2 flagella basal body P-ring formation protein compare
PP_4336 +0.6 2.7 flagellar motor rotation protein compare
PP_4952 +0.6 0.6 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4173 +0.6 3.9 Sensor histidine kinase/response regulator compare
PP_3760 +0.6 1.8 putative methyltransferase compare
PP_2077 +0.6 3.4 diaminopimelate decarboxylase compare
PP_1087 +0.6 2.9 Outer membrane protein, OmpA family compare
PP_2214 +0.6 1.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1503 +0.6 1.8 conserved protein of unknown function compare
PP_2358 +0.6 2.3 putative Type 1 pili subunit CsuA/B protein compare
PP_3484 +0.6 2.9 Response regulator receiver protein compare
PP_2520 +0.6 1.9 conserved protein of unknown function compare
PP_1655 +0.5 3.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0674 +0.5 3.7 ADP/ATP ratio sensor and inhibitor of translation compare
PP_3883 +0.5 0.7 putative Phage holin compare
PP_3833 +0.5 1.9 Response regulator compare
PP_2046 +0.5 2.1 Transcriptional regulator, LysR family compare
PP_2668 +0.5 1.0 ABC efflux transporter, ATP-binding protein compare
PP_3967 +0.5 1.7 MutT/nudix family protein compare
PP_1322 +0.5 0.8 putative Lipoprotein compare
PP_2882 +0.5 2.0 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1678 +0.5 1.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0805 +0.5 3.7 Outer membrane efflux protein compare
PP_5548 +0.5 1.0 protein of unknown function compare
PP_3660 +0.5 1.9 Transcriptional regulator, LysR family compare
PP_4381 +0.5 4.0 Flagellar hook-associated protein FlgK compare
PP_3614 +0.5 1.9 conserved membrane protein of unknown function compare
PP_3105 +0.5 0.7 conserved membrane protein of unknown function compare
PP_3902 +0.5 1.2 conserved protein of unknown function compare
PP_2900 +0.5 1.9 conserved protein of unknown function compare
PP_0083 +0.5 2.2 tryptophan synthase beta chain compare
PP_0630 +0.5 0.7 DNA gyrase inhibitor YacG compare
PP_2217 +0.5 1.0 enoyl-CoA hydratase compare
PP_4172 +0.5 2.9 conserved exported protein of unknown function compare
PP_2849 +0.5 1.8 urease accessory protein compare
PP_4787 +0.5 0.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3206 +0.5 2.3 conserved protein of unknown function compare
PP_3461 +0.5 2.7 quinohemoprotein amine dehydrogenase modification protein compare
PP_1836 +0.5 1.1 putative metal transporter, ZIP family compare
PP_3729 +0.5 1.7 Periplasmic amino acid-binding protein-related protein compare
PP_5549 +0.5 1.5 conserved protein of unknown function compare
PP_2365 +0.5 1.6 Transcriptional regulator, AraC family compare
PP_3576 +0.5 1.7 putative Transmembrane sensor compare
PP_3635 +0.5 2.0 putative Sulfonate ABC transporter, permease protein compare
PP_5167 +0.5 1.6 conserved hypothetical protein compare
PP_3376 +0.5 1.3 putative phosphonate dehydrogenase compare
PP_4368 +0.5 2.3 flagellar motor switch protein compare
PP_2734 +0.5 2.4 Cyclopropane-fatty-acyl-phospholipid synthase compare
PP_3208 +0.5 2.4 Oxidoreductase, Pdr/VanB family compare
PP_1066 +0.5 1.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_2101 +0.5 1.9 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_1907 +0.5 1.8 Hydrolase, haloacid dehalogenase-like family compare
PP_5102 +0.5 2.7 conserved hypothetical protein compare
PP_2834 +0.5 2.2 Putative D-galactarate dehydratase/Altronate dehydratase compare
PP_2695 +0.5 1.5 Transcriptional regulator, LysR family compare
PP_1575 +0.5 0.9 conserved protein of unknown function compare
PP_3454 +0.5 1.8 putative transcriptional regulatory protein compare
PP_0352 +0.5 2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4343 +0.5 2.3 Flagellar biosynthesis protein FlhF compare
PP_0957 +0.5 0.7 D-arabinose 5-phosphate isomerase compare
PP_3481 +0.5 0.8 conserved exported protein of unknown function compare
PP_0274 +0.5 1.0 putative transcriptional regulator containing HTH domain compare
PP_1660 +0.5 1.4 conserved protein of unknown function compare
PP_0917 +0.5 2.5 Chromosome initiation inhibitor compare
PP_5735 +0.5 1.6 conserved hypothetical protein compare
PP_0191 +0.5 1.5 Transcriptional regulatory protein AlgQ compare
PP_3799 +0.5 1.5 conserved exported protein of unknown function compare
PP_4228 +0.5 1.5 conserved protein of unknown function compare
PP_3747 +0.5 1.8 glycolate oxidase, iron-sulfur subunit compare
PP_3222 +0.5 1.9 ABC transporter, permease protein compare
PP_1511 +0.5 2.1 conserved protein of unknown function compare
PP_1788 +0.5 0.9 conserved protein of unknown function compare
PP_3013 +0.5 1.8 conserved protein of unknown function compare
PP_2446 +0.5 1.5 conserved exported protein of unknown function compare
PP_2715 +0.5 1.4 ArsH protein compare
PP_5631 +0.4 2.8 protein of unknown function compare
PP_4628 +0.4 1.9 conserved protein of unknown function compare
PP_0257 +0.4 2.0 protein sulfur transferase compare
PP_0673 +0.4 1.2 conserved protein of unknown function compare
PP_4681 +0.4 1.5 conserved protein of unknown function compare
PP_2514 +0.4 1.1 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_3837 +0.4 1.8 inner membrane protein of unknown function compare
PP_5698 +0.4 1.5 conserved exported protein of unknown function compare
PP_1225 +0.4 1.5 7-carboxy-7-deazaguanine synthase compare
PP_2281 +0.4 1.4 putative Capsid assembly protein compare
PP_0568 +0.4 2.1 conserved protein of unknown function compare
PP_2203 +0.4 1.1 conserved protein of unknown function compare
PP_0663 +0.4 1.7 Transcriptional regulator, AsnC family compare
PP_0978 +0.4 1.4 conserved protein of unknown function compare
PP_3509 +0.4 1.9 Glyoxalase family protein compare
PP_1895 +0.4 1.3 putative ABC transporter - ATP binding subunit compare
PP_2581 +0.4 0.8 conserved protein of unknown function compare
PP_1228 +0.4 2.1 Methyl-accepting chemotaxis transducer compare
PP_5678 +0.4 1.7 protein of unknown function compare
PP_2880 +0.4 0.6 Transcriptional regulator, TetR family compare
PP_5073 +0.4 0.9 conserved exported protein of unknown function compare
PP_4135 +0.4 1.8 conserved protein of unknown function compare
PP_5005 +0.4 2.8 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4352 +0.4 2.7 flagellin export apparatus, substrate specificity protein compare
PP_4109 +0.4 0.6 conserved protein of unknown function compare
PP_1834 +0.4 1.2 conserved protein of unknown function compare
PP_4162 +0.4 2.0 conserved membrane protein of unknown function compare
PP_4370 +0.4 1.5 Flagellar hook-basal body complex protein FliE compare
PP_2756 +0.4 1.0 conserved protein of unknown function compare
PP_4464 +0.4 1.3 Transcriptional regulator, LysR family compare
PP_1351 +0.4 2.3 putative 2-dehydropantoate 2-reductase compare
PP_1067 +0.4 2.7 Sensor histidine kinase compare
PP_1113 +0.4 2.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1759 +0.4 1.8 conserved exported protein of unknown function compare
PP_4559 +0.4 1.4 peptide deformylase compare
PP_4166 +0.4 1.3 conserved protein of unknown function compare
PP_2173 +0.4 2.0 Transcriptional regulator, AraC family compare
PP_5686 +0.4 1.1 protein of unknown function compare
PP_2532 +0.4 2.1 conserved protein of unknown function compare
PP_2340 +0.4 1.4 conserved protein of unknown function compare
PP_1259 +0.4 1.8 Aspartate-proton symporter compare
PP_0196 +0.4 1.8 putative of ABC superfamily informational factor: ATP-binding components compare
PP_2646 +0.4 1.7 conserved protein of unknown function compare
PP_4054 +0.4 0.8 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control experiments