Experiment set33S245 for Pseudomonas simiae WCS417

Compare to:

80% Methanol 0.5 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_23915 -3.0 -5.4 pantoate--beta-alanine ligase compare
PS417_28050 -3.0 -2.5 hypothetical protein compare
PS417_18310 -2.6 -1.7 hypothetical protein compare
PS417_06680 -2.4 -5.6 nuclease PIN compare
PS417_04380 -2.3 -1.5 ABC transporter permease compare
PS417_26990 -2.2 -1.4 RNA pyrophosphohydrolase compare
PS417_27195 -2.0 -2.0 N-acetylglutamate synthase compare
PS417_08125 -1.9 -0.8 prephenate dehydratase compare
PS417_06375 -1.9 -0.8 deoxycytidine triphosphate deaminase compare
PS417_22840 -1.8 -2.5 tRNA-Met compare
PS417_24605 -1.5 -2.9 thiamine-phosphate pyrophosphorylase compare
PS417_24600 -1.5 -6.5 hydrogenase compare
PS417_21625 -1.5 -1.4 DNA-binding protein compare
PS417_02280 -1.5 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_26775 -1.4 -7.9 thiazole synthase compare
PS417_21430 -1.4 -1.5 3-oxoacyl-ACP synthase compare
PS417_02720 -1.4 -1.4 TetR family transcriptional regulator compare
PS417_11585 -1.3 -3.2 LuxR family transcriptional regulator compare
PS417_14655 -1.3 -1.7 lysine transporter LysE compare
PS417_23805 -1.2 -3.6 acetolactate synthase 3 regulatory subunit compare
PS417_02880 -1.1 -1.6 copper chaperone compare
PS417_27795 -1.1 -0.7 orotate phosphoribosyltransferase compare
PS417_06145 -1.1 -1.4 hypothetical protein compare
PS417_27870 -1.1 -1.9 ATP-dependent DNA helicase RecG compare
PS417_23810 -1.1 -5.3 acetolactate synthase 3 catalytic subunit compare
PS417_04365 -1.1 -0.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01855 -1.1 -3.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_00920 -1.1 -3.1 diguanylate cyclase compare
PS417_22570 -1.1 -0.9 H-NS histone compare
PS417_24935 -1.1 -1.2 hypothetical protein compare
PS417_10645 -1.1 -3.1 magnesium ABC transporter ATPase compare
PS417_23775 -1.0 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_04585 -1.0 -1.0 hypothetical protein compare
PS417_21480 -1.0 -1.3 23S rRNA pseudouridylate synthase compare
PS417_18425 -1.0 -1.5 sporulation protein compare
PS417_09470 -1.0 -1.5 hypothetical protein compare
PS417_00385 -1.0 -1.3 Fur family transcriptional regulator compare
PS417_22450 -1.0 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_19675 -1.0 -3.3 chemotaxis protein CheY compare
PS417_02485 -1.0 -1.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24710 -1.0 -6.5 lipoprotein compare
PS417_02270 -0.9 -2.0 carbamoyltransferase compare
PS417_24745 -0.9 -1.7 gamma-glutamyl phosphate reductase compare
PS417_02255 -0.9 -1.6 lipopolysaccharide kinase compare
PS417_07170 -0.9 -2.2 hypothetical protein compare
PS417_22690 -0.9 -1.4 phosphogluconate dehydratase compare
PS417_02555 -0.9 -5.7 exoribonuclease R compare
PS417_00065 -0.9 -1.6 3-methyladenine DNA glycosylase compare
PS417_21630 -0.9 -1.5 magnesium transporter compare
PS417_06500 -0.9 -1.7 hypothetical protein compare
PS417_07565 -0.9 -1.5 hypothetical protein compare
PS417_03815 -0.8 -1.5 DNA transporter compare
PS417_03455 -0.8 -0.8 type III secretion protein compare
PS417_07695 -0.8 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_27245 -0.8 -1.5 aminotransferase DegT compare
PS417_06895 -0.8 -2.3 DNA-binding protein compare
PS417_08990 -0.8 -3.0 ABC transporter substrate-binding protein compare
PS417_24615 -0.8 -1.0 hypothetical protein compare
PS417_02950 -0.8 -1.2 tRNA-dihydrouridine synthase B compare
PS417_15540 -0.8 -1.4 NUDIX hydrolase compare
PS417_21070 -0.8 -1.4 aconitate hydratase compare
PS417_19955 -0.8 -1.5 hypothetical protein compare
PS417_26850 -0.8 -0.8 twin-arginine translocation pathway signal protein compare
PS417_26730 -0.8 -0.5 pyrroline-5-carboxylate reductase compare
PS417_23380 -0.8 -1.7 cytochrome o ubiquinol oxidase subunit III compare
PS417_21510 -0.8 -1.7 histidine kinase compare
PS417_22610 -0.8 -2.4 pilus assembly protein PilZ compare
PS417_23375 -0.8 -1.0 cytochrome C oxidase compare
PS417_19350 -0.7 -2.9 GTP cyclohydrolase compare
PS417_18020 -0.7 -1.3 hypothetical protein compare
PS417_22085 -0.7 -2.1 aldehyde dehydrogenase compare
PS417_07710 -0.7 -1.7 membrane protein compare
PS417_02805 -0.7 -1.2 urease subunit gamma compare
PS417_09245 -0.7 -1.3 recombinase RdgC compare
PS417_01560 -0.7 -1.4 imidazoleglycerol-phosphate dehydratase compare
PS417_20985 -0.7 -0.5 porin compare
PS417_01965 -0.7 -1.5 fimbriae biosynthesis protein compare
PS417_16515 -0.7 -2.8 Clp protease ClpS compare
PS417_06675 -0.7 -1.6 ATP-dependent helicase compare
PS417_17780 -0.7 -1.0 Ais protein compare
PS417_08435 -0.7 -1.5 pilus assembly protein PilZ compare
PS417_16555 -0.7 -1.0 cupin compare
PS417_08540 -0.7 -1.5 RNA helicase compare
PS417_24370 -0.7 -0.7 (2Fe-2S)-binding protein compare
PS417_20705 -0.7 -1.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_17440 -0.7 -1.1 beta-lactamase compare
PS417_07770 -0.7 -1.6 hypothetical protein compare
PS417_28220 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_23950 -0.7 -0.7 polynucleotide phosphorylase/polyadenylase compare
PS417_19600 -0.7 -0.7 exonuclease compare
PS417_07795 -0.6 -3.4 hypothetical protein compare
PS417_28070 -0.6 -3.4 phosphate ABC transporter ATP-binding protein compare
PS417_16490 -0.6 -0.9 cell division protein FtsK compare
PS417_19835 -0.6 -1.2 flagellar biosynthesis protein FliS compare
PS417_23170 -0.6 -1.3 FeS assembly protein IscX compare
PS417_05160 -0.6 -1.0 DNA polymerase III subunit chi compare
PS417_04270 -0.6 -3.6 ribonuclease G compare
PS417_26260 -0.6 -1.3 hypothetical protein compare
PS417_28035 -0.6 -2.6 transcriptional regulator PhoB compare
PS417_27485 -0.6 -1.6 hypothetical protein compare
PS417_08170 -0.6 -3.8 capsular biosynthesis protein compare
PS417_14980 -0.6 -0.9 universal stress protein UspA compare
PS417_27605 -0.6 -3.1 hypothetical protein compare
PS417_04865 -0.6 -0.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_20880 -0.6 -2.0 GntR family transcriptional regulator compare
PS417_17215 -0.6 -1.2 peptidylprolyl isomerase compare
PS417_12280 -0.6 -1.6 MerR family transcriptional regulator compare
PS417_28225 -0.6 -1.0 hypothetical protein compare
PS417_27425 -0.6 -3.2 exopolyphosphatase compare
PS417_12900 -0.6 -2.7 Fe-S protein compare
PS417_17930 -0.6 -1.7 aldehyde dehydrogenase compare
PS417_17840 -0.6 -1.2 betaine-aldehyde dehydrogenase compare
PS417_10675 -0.6 -0.9 TetR family transcriptional regulator compare
PS417_01435 -0.6 -1.0 hypothetical protein compare
PS417_11440 -0.6 -1.3 hypothetical protein compare
PS417_22260 -0.6 -1.7 segregation and condensation protein B compare
PS417_13575 -0.6 -1.9 succinylglutamate desuccinylase compare
PS417_19660 -0.6 -3.5 cobalamin biosynthesis protein CobQ compare
PS417_15805 -0.6 -1.2 transporter compare
PS417_08410 -0.6 -0.9 hypothetical protein compare
PS417_05510 -0.6 -2.5 alpha/beta hydrolase compare
PS417_02415 -0.6 -1.9 phosphoserine phosphatase compare
PS417_06200 -0.6 -2.7 protein-PII uridylyltransferase compare
PS417_27135 -0.6 -0.5 glutamine synthetase compare
PS417_12595 -0.6 -1.0 transcriptional regulator compare
PS417_00085 -0.6 -1.4 16S rRNA methyltransferase compare
PS417_19275 -0.6 -0.6 hypothetical protein compare
PS417_04305 -0.6 -1.0 aspartate ammonia-lyase compare
PS417_21270 -0.5 -0.7 translation initiation factor 2 compare
PS417_11420 -0.5 -1.3 potassium transporter KefB compare
PS417_18730 -0.5 -1.7 ABC transporter permease compare
PS417_22150 -0.5 -1.8 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_25720 -0.5 -3.3 anthranilate synthase component II compare
PS417_19665 -0.5 -1.9 flagellar motor protein MotD compare
PS417_11380 -0.5 -1.2 peptidylprolyl isomerase compare
PS417_02375 -0.5 -2.5 hypothetical protein compare
PS417_16400 -0.5 -1.4 NAD(P)H-quinone oxidoreductase compare
PS417_01585 -0.5 -1.7 amino acid ABC transporter substrate-binding protein compare
PS417_23615 -0.5 -1.1 sulfate transporter compare
PS417_09150 -0.5 -1.3 energy transducer TonB compare
PS417_02575 -0.5 -1.7 membrane protein compare
PS417_18545 -0.5 -1.5 cell division protein compare
PS417_16510 -0.5 -1.3 Clp protease ClpX compare
PS417_01565 -0.5 -2.7 imidazole glycerol phosphate synthase compare
PS417_14305 -0.5 -1.5 hydroxyproline-2-epimerase compare
PS417_00370 -0.5 -0.6 hypothetical protein compare
PS417_18845 -0.5 -1.8 peptidase compare
PS417_19415 -0.5 -1.2 allantoinase compare
PS417_02740 -0.5 -1.4 LysR family transcriptional regulator compare
PS417_12805 -0.5 -3.9 glycogen branching protein compare
PS417_26400 -0.5 -1.9 metal-dependent hydrolase compare
PS417_16105 -0.5 -1.4 LysR family transcriptional regulator compare
PS417_27865 -0.5 -1.1 LysR family transcriptional regulator compare
PS417_20130 -0.5 -3.4 dehydrogenase compare
PS417_00080 -0.5 -3.0 potassium transporter peripheral membrane component compare
PS417_22380 -0.5 -2.3 hypothetical protein compare
PS417_02870 -0.5 -2.7 TonB-dependent receptor compare
PS417_08680 -0.5 -0.8 flagellar biosynthesis protein FlhB compare
PS417_27040 -0.5 -0.9 3-phosphoglycerate dehydrogenase compare
PS417_06860 -0.5 -2.2 methyltransferase compare
PS417_15590 -0.5 -2.3 hypothetical protein compare
PS417_07140 -0.5 -1.1 peptidase M48 compare
PS417_23900 -0.5 -2.5 poly(A) polymerase compare
PS417_13755 -0.5 -1.3 oxidoreductase compare
PS417_00405 -0.5 -2.7 DNA polymerase I compare
PS417_24115 -0.5 -1.2 hypothetical protein compare
PS417_04390 -0.5 -1.2 toluene tolerance protein compare
PS417_25270 -0.5 -1.2 NrdR family transcriptional regulator compare
PS417_03465 -0.5 -0.6 type III secretion protein compare
PS417_26525 -0.5 -3.2 DEAD/DEAH box helicase compare
PS417_08685 -0.5 -1.0 flagellar hook-length control protein FliK compare
PS417_23545 -0.5 -0.6 gamma-glutamyl kinase compare
PS417_08135 -0.5 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11215 -0.5 -1.6 arylesterase compare
PS417_11060 -0.5 -1.8 transporter compare
PS417_03560 -0.5 -0.7 GTP-binding protein compare
PS417_05050 -0.5 -2.6 carboxymethylenebutenolidase compare
PS417_10455 -0.5 -1.5 membrane protein compare
PS417_15100 -0.5 -0.9 BatB protein compare
PS417_28440 -0.5 -2.0 hypothetical protein compare
PS417_26685 -0.5 -0.8 hypothetical protein compare
PS417_21360 -0.5 -0.7 termination factor Rho compare
PS417_03385 -0.5 -0.8 flavin reductase compare
PS417_02975 -0.5 -1.4 3-dehydroquinate dehydratase compare
PS417_27315 -0.5 -0.8 hypothetical protein compare
PS417_24895 -0.5 -0.9 hypothetical protein compare
PS417_11195 -0.5 -2.2 NAD(P)H-quinone oxidoreductase compare
PS417_15470 -0.5 -1.8 saccharopine dehydrogenase compare
PS417_03920 -0.5 -1.5 dephospho-CoA kinase compare
PS417_12390 -0.5 -1.2 hypothetical protein compare
PS417_25705 -0.5 -1.5 lipoate--protein ligase compare
PS417_01620 -0.5 -1.3 preprotein translocase subunit SecB compare
PS417_14070 -0.5 -1.3 hypothetical protein compare
PS417_18435 -0.4 -1.4 hypothetical protein compare
PS417_21105 -0.4 -2.8 aminodeoxychorismate synthase compare
PS417_13160 -0.4 -2.8 iron transporter compare
PS417_24990 -0.4 -1.8 exotoxin compare
PS417_18930 -0.4 -1.0 restriction endonuclease subunit S compare
PS417_27515 -0.4 -1.7 heme biosynthesis protein HemY compare
PS417_20395 -0.4 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in liquid stress experiments

For liquid stress 80% Methanol across organisms