Experiment set32S572 for Pseudomonas simiae WCS417

Compare to:

Fraxetin 3 mM; liquid stress

200 most important genes:

  gene name fitness t score description  
PS417_28070 -6.5 -9.8 phosphate ABC transporter ATP-binding protein compare
PS417_27865 -6.4 -4.4 LysR family transcriptional regulator compare
PS417_06770 -5.1 -6.1 multidrug transporter compare
PS417_06775 -4.9 -8.3 antibiotic transporter compare
PS417_00650 -4.9 -1.9 LysR family transcriptional regulator compare
PS417_00660 -4.9 -4.7 DSBA oxidoreductase compare
PS417_27835 -4.5 -9.4 endoribonuclease compare
PS417_00665 -4.4 -6.9 RND transporter compare
PS417_28080 -4.1 -14.4 phosphate ABC transporter permease compare
PS417_28085 -4.0 -11.7 phosphate-binding protein compare
PS417_27135 -3.9 -1.5 glutamine synthetase compare
PS417_14045 -3.8 -4.6 alkyl hydroperoxide reductase compare
PS417_10645 -3.7 -12.5 magnesium ABC transporter ATPase compare
PS417_26985 -3.7 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_17215 -3.5 -4.2 peptidylprolyl isomerase compare
PS417_00655 -3.4 -6.1 DSBA oxidoreductase compare
PS417_22935 -3.3 -4.2 hypothetical protein compare
PS417_23385 -3.3 -7.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_22735 -3.3 -12.1 thiol oxidoreductase compare
PS417_05590 -3.3 -8.0 iron ABC transporter ATP-binding protein compare
PS417_05365 -3.2 -2.5 FAD-binding protein compare
PS417_27795 -3.2 -1.2 orotate phosphoribosyltransferase compare
PS417_07615 -2.8 -7.3 TetR family transcriptional regulator compare
PS417_01915 -2.7 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27605 -2.6 -6.1 hypothetical protein compare
PS417_02485 -2.5 -3.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_27870 -2.5 -3.0 ATP-dependent DNA helicase RecG compare
PS417_12750 -2.5 -7.0 acriflavine resistance protein B compare
PS417_24615 -2.4 -2.2 hypothetical protein compare
PS417_18310 -2.4 -1.5 hypothetical protein compare
PS417_23375 -2.4 -2.6 cytochrome C oxidase compare
PS417_22195 -2.4 -4.5 peptidase compare
PS417_00345 -2.3 -3.2 copper-binding protein compare
PS417_08155 -2.3 -2.0 integration host factor subunit beta compare
PS417_26990 -2.3 -1.2 RNA pyrophosphohydrolase compare
PS417_27610 -2.3 -10.0 hypothetical protein compare
PS417_10720 -2.3 -6.1 chemotaxis protein CheY compare
PS417_06680 -2.3 -5.4 nuclease PIN compare
PS417_20855 -2.3 -1.9 hypothetical protein compare
PS417_01955 -2.2 -9.0 peptidase compare
PS417_28075 -2.2 -4.8 phosphate ABC transporter permease compare
PS417_28050 -2.2 -1.7 hypothetical protein compare
PS417_04380 -2.2 -1.4 ABC transporter permease compare
PS417_04385 -2.2 -2.1 organic solvent ABC transporter substrate-binding protein compare
PS417_05210 -2.2 -7.8 copper oxidase compare
PS417_12745 -2.2 -6.7 multidrug transporter compare
PS417_03995 -2.2 -3.6 Fe(II)-dependent oxygenase compare
PS417_26730 -2.1 -1.1 pyrroline-5-carboxylate reductase compare
PS417_00045 -2.1 -2.2 glycerol acyltransferase compare
PS417_16370 -2.1 -9.6 chemotaxis protein CheY compare
PS417_04590 -2.1 -5.8 methyltransferase compare
PS417_03990 -2.1 -12.7 ligand-gated channel protein compare
PS417_02555 -2.0 -10.1 exoribonuclease R compare
PS417_02225 -2.0 -3.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_07140 -2.0 -3.0 peptidase M48 compare
PS417_23390 -2.0 -5.7 ubiquinol oxidase subunit II compare
PS417_01620 -1.9 -3.9 preprotein translocase subunit SecB compare
PS417_21430 -1.9 -1.8 3-oxoacyl-ACP synthase compare
PS417_06365 -1.9 -6.9 RNA polymerase sigma factor compare
PS417_09830 -1.9 -6.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_08125 -1.9 -0.7 prephenate dehydratase compare
PS417_06375 -1.8 -0.7 deoxycytidine triphosphate deaminase compare
PS417_22565 -1.8 -0.7 formyltetrahydrofolate deformylase compare
PS417_14065 -1.8 -6.7 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_12755 -1.8 -3.8 RND transporter compare
PS417_02255 -1.7 -4.1 lipopolysaccharide kinase compare
PS417_02280 -1.7 -1.1 GlcNAc-PI de-N-acetylase compare
PS417_07170 -1.7 -4.3 hypothetical protein compare
PS417_02270 -1.7 -3.5 carbamoyltransferase compare
PS417_06205 -1.7 -6.6 methionine aminopeptidase compare
PS417_27490 -1.7 -3.3 hypothetical protein compare
PS417_23915 -1.6 -3.2 pantoate--beta-alanine ligase compare
PS417_01185 -1.6 -4.5 ribosomal protein S6 modification protein compare
PS417_22400 -1.6 -8.0 7-cyano-7-deazaguanine synthase compare
PS417_23380 -1.6 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_01920 -1.6 -1.1 ATP-dependent protease subunit HslV compare
PS417_04000 -1.6 -9.9 hypothetical protein compare
PS417_18355 -1.6 -7.3 DNA-binding protein compare
PS417_27640 -1.6 -1.5 TetR family transcriptional regulator compare
PS417_12740 -1.6 -3.3 secretion protein HlyD compare
PS417_24385 -1.5 -5.3 tRNA (uracil-5-)-methyltransferase compare
PS417_27535 -1.5 -8.9 chemotaxis protein CheY compare
PS417_21480 -1.5 -1.3 23S rRNA pseudouridylate synthase compare
PS417_22745 -1.5 -4.7 hypothetical protein compare
PS417_26335 -1.5 -1.9 BetI family transcriptional regulator compare
PS417_26605 -1.5 -1.5 malonate decarboxylase subunit beta compare
PS417_05650 -1.5 -2.9 leucyl-tRNA synthetase compare
PS417_03830 -1.4 -6.8 protein disaggregation chaperone compare
PS417_16360 -1.4 -4.8 histidine kinase compare
PS417_18545 -1.4 -3.0 cell division protein compare
PS417_07710 -1.4 -2.3 membrane protein compare
PS417_01600 -1.4 -3.4 peptidase M23 compare
PS417_25320 -1.4 -8.4 dTDP-4-dehydrorhamnose reductase compare
PS417_02525 -1.4 -8.2 iron ABC transporter permease compare
PS417_22740 -1.4 -5.9 imelysin compare
PS417_23995 -1.4 -1.0 preprotein translocase subunit SecG compare
PS417_26500 -1.3 -5.6 thioesterase compare
PS417_02950 -1.3 -2.9 tRNA-dihydrouridine synthase B compare
PS417_15075 -1.3 -8.5 NAD-glutamate dehydrogenase compare
PS417_01790 -1.3 -7.2 glucan biosynthesis protein G compare
PS417_12310 -1.3 -4.3 methionine synthase compare
PS417_23950 -1.3 -1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_03985 -1.3 -6.6 flavodoxin compare
PS417_24415 -1.3 -4.5 siderophore-interacting protein compare
PS417_22405 -1.3 -7.6 7-carboxy-7-deazaguanine synthase compare
PS417_25720 -1.3 -5.0 anthranilate synthase component II compare
PS417_27300 -1.3 -0.9 cell division protein ZapA compare
PS417_19415 -1.3 -2.3 allantoinase compare
PS417_27705 -1.2 -1.8 amino acid dehydrogenase compare
PS417_04390 -1.2 -2.1 toluene tolerance protein compare
PS417_24710 -1.2 -7.1 lipoprotein compare
PS417_02880 -1.2 -1.5 copper chaperone compare
PS417_01795 -1.2 -8.1 glucosyltransferase MdoH compare
PS417_07165 -1.2 -4.3 dihydrodipicolinate synthase compare
PS417_03300 -1.2 -2.1 alanine acetyltransferase compare
PS417_12005 -1.2 -3.0 hypothetical protein compare
PS417_24800 -1.2 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_00370 -1.2 -1.1 hypothetical protein compare
PS417_23820 -1.2 -4.0 hypothetical protein compare
PS417_07305 -1.1 -1.8 3-beta hydroxysteroid dehydrogenase compare
PS417_04585 -1.1 -1.6 hypothetical protein compare
PS417_14040 -1.1 -4.5 alkyl hydroperoxide reductase compare
PS417_01580 -1.1 -1.5 imidazole glycerol phosphate synthase compare
PS417_20130 -1.1 -6.0 dehydrogenase compare
PS417_21425 -1.1 -2.1 4-amino-4-deoxychorismate lyase compare
PS417_05595 -1.1 -3.9 ornithine carbamoyltransferase compare
PS417_06895 -1.1 -2.7 DNA-binding protein compare
PS417_27585 -1.1 -1.6 diaminopimelate epimerase compare
PS417_15800 -1.1 -3.8 photosynthetic protein synthase I compare
PS417_22115 -1.1 -3.2 transcriptional regulator compare
PS417_25710 -1.1 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_08580 -1.1 -4.3 histidine kinase compare
PS417_12695 -1.1 -4.7 mannitol dehydrogenase compare
PS417_27295 -1.1 -3.1 hypothetical protein compare
PS417_22170 -1.0 -1.4 acetyltransferase compare
PS417_24780 -1.0 -6.3 peptidase C13 compare
PS417_22445 -1.0 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_24935 -1.0 -1.1 hypothetical protein compare
PS417_03935 -1.0 -1.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_00920 -1.0 -3.6 diguanylate cyclase compare
PS417_16490 -1.0 -0.9 cell division protein FtsK compare
PS417_15085 -1.0 -3.0 ATPase AAA compare
PS417_01605 -1.0 -1.0 phosphoglycerate mutase compare
PS417_24600 -1.0 -3.4 hydrogenase compare
PS417_15095 -1.0 -1.9 hypothetical protein compare
PS417_17680 -1.0 -1.7 ABC transporter compare
PS417_24265 -1.0 -3.9 ABC transporter ATP-binding protein compare
PS417_07695 -1.0 -3.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_23880 -1.0 -4.7 glutamyl-Q tRNA(Asp) ligase compare
PS417_02975 -1.0 -3.3 3-dehydroquinate dehydratase compare
PS417_09695 -1.0 -1.4 hydrolase compare
PS417_24705 -1.0 -1.8 D-alanyl-D-alanine carboxypeptidase compare
PS417_02980 -1.0 -1.1 chemotaxis protein compare
PS417_09625 -1.0 -2.1 sugar ABC transporter substrate-binding protein compare
PS417_23575 -0.9 -2.3 hypothetical protein compare
PS417_23025 -0.9 -3.3 murein transglycosylase compare
PS417_25975 -0.9 -5.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_08410 -0.9 -1.9 hypothetical protein compare
PS417_06100 -0.9 -1.6 SAM-dependent methyltransferase compare
PS417_21105 -0.9 -5.6 aminodeoxychorismate synthase compare
PS417_06530 -0.9 -1.8 membrane protein compare
PS417_23545 -0.9 -0.9 gamma-glutamyl kinase compare
PS417_26770 -0.9 -2.5 tRNA (guanine-N7)-methyltransferase compare
PS417_02530 -0.9 -4.8 iron ABC transporter substrate-binding protein compare
PS417_23135 -0.9 -1.4 GTP-binding protein compare
PS417_12500 -0.9 -6.1 peptide ABC transporter substrate-binding protein compare
PS417_04365 -0.9 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15110 -0.9 -3.9 protein BatD compare
PS417_02475 -0.9 -1.8 N-acetylmuramoyl-L-alanine amidase compare
PS417_24745 -0.9 -0.9 gamma-glutamyl phosphate reductase compare
PS417_22690 -0.9 -2.8 phosphogluconate dehydratase compare
PS417_15090 -0.9 -1.5 hypothetical protein compare
PS417_23215 -0.9 -2.5 RNA methyltransferase compare
PS417_08540 -0.9 -1.7 RNA helicase compare
PS417_26070 -0.9 -2.7 amino acid ABC transporter substrate-binding protein compare
PS417_27125 -0.9 -4.2 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_09590 -0.9 -3.4 membrane protein compare
PS417_23250 -0.9 -3.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_17445 -0.9 -2.9 sulfur oxidation protein SoxZ compare
PS417_15105 -0.9 -2.9 membrane protein compare
PS417_01560 -0.9 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_04875 -0.9 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_28350 -0.9 -3.8 fatty acid methyltransferase compare
PS417_23825 -0.9 -3.4 penicillin-binding protein compare
PS417_12805 -0.9 -5.5 glycogen branching protein compare
PS417_24885 -0.9 -2.8 transcriptional regulator compare
PS417_19350 -0.8 -2.3 GTP cyclohydrolase compare
PS417_04415 -0.8 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_28250 -0.8 -5.8 cell wall assembly protein compare
PS417_00440 -0.8 -4.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_26525 -0.8 -3.6 DEAD/DEAH box helicase compare
PS417_06330 -0.8 -2.4 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_04420 -0.8 -4.8 histidinol dehydrogenase compare
PS417_12855 -0.8 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_10675 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_24585 -0.8 -4.5 AMP nucleosidase compare
PS417_08170 -0.8 -5.8 capsular biosynthesis protein compare
PS417_27515 -0.8 -2.6 heme biosynthesis protein HemY compare
PS417_07515 -0.8 -5.6 aconitate hydratase compare
PS417_02460 -0.8 -4.6 epoxyqueuosine reductase compare


Specific Phenotypes

For 18 genes in this experiment

For liquid stress Fraxetin in Pseudomonas simiae WCS417

For liquid stress Fraxetin across organisms