Experiment set30IT058 for Pseudomonas putida KT2440

Compare to:

C.elegans, mixed culture-2

200 most important genes:

  gene name fitness t score description  
PP_4789 -6.8 -6.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2646 -6.0 -3.9 conserved protein of unknown function compare
PP_4902 -5.9 -5.8 Oligoribonuclease compare
PP_2645 -5.5 -13.4 magnesium transporter, ATP-dependent compare
PP_5322 -5.0 -9.0 putative metal ion transporter compare
PP_1898 -5.0 -4.9 MotA/TolQ/ExbB proton channel family protein compare
PP_3244 -4.8 -4.5 Magnesium transporter, MgtC family compare
PP_4098 -4.7 -3.4 UvrABC system protein C compare
PP_4874 -4.6 -3.6 50S ribosomal protein L9 compare
PP_0082 -4.4 -7.9 tryptophan synthase alpha chain compare
PP_5090 -4.4 -3.0 putative cell division protein compare
PP_4804 -4.4 -3.0 RlpA-like lipoprotein compare
PP_5000 -4.4 -1.8 peptidase component of the ATP-dependent HslVU protease compare
PP_0856 -4.4 -7.8 conserved lipoprotein of unknown function compare
PP_0719 -4.4 -3.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4593 -4.3 -1.9 conserved protein of unknown function compare
PP_4701 -4.3 -1.3 glucose-6-phosphate isomerase compare
PP_4354 -4.0 -2.8 flagellar export apparatus subunit compare
PP_1995 -4.0 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0421 -3.9 -9.4 Anthranilate phosphoribosyltransferase compare
PP_4828 -3.9 -1.6 Precorrin-8X methylmutase compare
PP_4008 -3.7 -10.2 ATP-dependent serine protease compare
PP_1912 -3.7 -6.3 Phosphate acyltransferase compare
PP_0083 -3.7 -8.2 tryptophan synthase beta chain compare
PP_4342 -3.7 -6.1 flagellar synthesis regulator, putative ATPase compare
PP_1764 -3.6 -5.0 Phosphoglycolate phosphatase 2 compare
PP_0852 -3.6 -6.5 Transcriptional regulator, Cro/CI family compare
PP_4370 -3.5 -4.5 Flagellar hook-basal body complex protein FliE compare
PP_4909 -3.4 -8.3 phosphoserine phosphatase compare
PP_0959 -3.4 -2.9 phospholipid ABC transporter compare
PP_5055 -3.4 -5.6 Sulfurtransferase compare
PP_0846 -3.3 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_2145 -3.3 -4.2 beta-N-acetylglucosaminidase compare
PP_0401 -3.3 -3.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4058 -3.3 -10.0 1,4-alpha-glucan branching enzyme compare
PP_5267 -3.2 -2.2 putative cytochrome c5 compare
PP_4999 -3.2 -2.2 dihydroorotase-like protein compare
PP_0166 -3.2 -12.5 HlyD family secretion protein compare
PP_4375 -3.2 -11.0 flagellar chaperone, inhibits premature FliC assembly compare
PP_1985 -3.2 -5.2 3-isopropylmalate dehydratase large subunit compare
PP_5216 -3.1 -3.1 exopolyphosphatase compare
PP_4785 -3.1 -5.0 conserved exported protein of unknown function compare
PP_0167 -3.1 -15.5 Toxin secretion ATP-binding protein compare
PP_1428 -3.1 -3.1 Sigma factor AlgU negative regulatory protein compare
PP_4341 -3.1 -8.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0417 -3.1 -16.0 Anthranilate synthase component 1 compare
PP_0168 -3.1 -19.7 putative surface adhesion protein compare
PP_1733 -3.0 -4.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4880 -3.0 -12.2 exoribonuclease R compare
PP_4693 -3.0 -5.7 RNA polymerase-binding transcription factor DksA compare
PP_5140 -3.0 -3.5 Transcriptional regulator, MerR family compare
PP_4361 -3.0 -5.6 Flagellar hook-length control protein FliK compare
PP_4519 -3.0 -13.2 Agglutination protein compare
PP_4143 -3.0 -5.2 conserved protein of unknown function compare
PP_1233 -2.9 -4.7 sulfurtransferase compare
PP_4724 -2.9 -2.0 Carbamoyl-phosphate synthase small chain compare
PP_0127 -2.9 -3.5 Thiol:disulfide interchange protein compare
PP_4368 -2.9 -5.8 flagellar motor switch protein compare
PP_4723 -2.8 -2.0 Carbamoyl-phosphate synthase large chain compare
PP_2214 -2.8 -5.1 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0422 -2.8 -4.8 Indole-3-glycerol phosphate synthase compare
PP_0165 -2.8 -15.4 GGDEF domain protein compare
PP_4344 -2.8 -10.8 flagellar export pore protein compare
PP_4384 -2.8 -8.2 Flagellar L-ring protein compare
PP_1623 -2.7 -11.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_3999 -2.7 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0888 -2.7 -3.6 Photosynthetic apparatus regulatory protein RegA compare
PP_5331 -2.7 -5.0 Long-chain acyl-CoA thioester hydrolase compare
PP_4799 -2.7 -1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4378 -2.6 -12.1 flagellin, filament structural protein compare
PP_5053 -2.6 -9.9 Protein-export protein SecB compare
PP_4994 -2.6 -4.5 conserved protein of unknown function compare
PP_1232 -2.6 -6.1 conserved exported protein of unknown function compare
PP_4620 -2.6 -8.4 Fumarylacetoacetase compare
PP_2144 -2.6 -5.6 Transcriptional regulator, TetR family compare
PP_0809 -2.6 -7.3 disulfide bond formation protein B compare
PP_5128 -2.6 -8.3 Dihydroxy-acid dehydratase compare
PP_3245 -2.5 -1.7 conserved protein of unknown function compare
PP_5232 -2.5 -2.4 conserved protein of unknown function compare
PP_5471 -2.5 -2.2 putative response regulator receiver protein compare
PP_5054 -2.5 -2.6 glutaredoxin 3 compare
PP_4722 -2.5 -5.2 Transcription elongation factor GreA compare
PP_0435 -2.4 -7.3 Peptidase, M23/M37 family compare
PP_2568 -2.4 -1.5 Ring-cleaving dioxygenase compare
PP_4380 -2.4 -10.7 Flagellar hook-associated protein FlgL compare
PP_4366 -2.4 -8.5 flagellum-specific ATP synthase compare
PP_4394 -2.4 -4.2 flagella basal body P-ring formation protein compare
PP_1410 -2.4 -1.6 conserved protein of unknown function compare
PP_4391 -2.3 -5.5 flagellar basal-body rod protein FlgB compare
PP_1237 -2.3 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4379 -2.3 -3.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5155 -2.3 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5104 -2.2 -7.4 thiazole synthase compare
PP_1309 -2.2 -6.6 conserved exported protein of unknown function compare
PP_4964 -2.2 -5.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4782 -2.2 -4.9 Phosphomethylpyrimidine kinase compare
PP_4382 -2.2 -5.5 Peptidoglycan hydrolase FlgJ compare
PP_4376 -2.2 -8.1 flagellar filament capping protein compare
PP_0984 -2.1 -2.9 conserved membrane protein of unknown function compare
PP_2475 -2.1 -5.8 Transcriptional regulator, TetR family compare
PP_4385 -2.1 -3.0 flagellar basal-body rod protein FlgG compare
PP_4383 -2.1 -2.2 Flagellar P-ring protein compare
PP_4353 -2.1 -5.6 Flagellar biosynthetic protein fliR compare
PP_1589 -2.1 -6.8 uridylyltransferase compare
PP_0833 -2.1 -2.4 queuine tRNA-ribosyltransferase compare
PP_4481 -2.1 -6.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4260 -2.1 -5.1 conserved protein of unknown function compare
PP_4517 -2.1 -3.3 conserved protein of unknown function compare
PP_2402 -2.1 -2.1 putative Sensor histidine kinase compare
PP_0917 -2.0 -4.8 Chromosome initiation inhibitor compare
PP_0420 -2.0 -7.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4099 -2.0 -15.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5058 -2.0 -6.2 Carboxy-terminal-processing protease compare
PP_4470 -2.0 -3.8 putative transcriptional regulator (Arc domain-containing) compare
PP_0406 -2.0 -2.8 Nucleotidyltransferase family protein compare
PP_1678 -2.0 -2.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4358 -2.0 -4.5 flagellar synthesis, switching and energizing component compare
PP_0960 -2.0 -5.6 phospholipid ABC transporter binding protein compare
PP_4803 -2.0 -4.9 D-alanyl-D-alanine carboxypeptidase compare
PP_1988 -2.0 -4.8 3-isopropylmalate dehydrogenase compare
PP_1128 -1.9 -3.9 OmpA family protein compare
PP_0048 -1.9 -1.5 conserved protein of unknown function compare
PP_4726 -1.9 -2.6 Chaperone protein DnaJ compare
PP_4386 -1.9 -3.3 flagellar basal-body rod protein FlgF compare
PP_3821 -1.9 -6.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5114 -1.9 -2.3 putative adenine methyltransferase compare
PP_4678 -1.9 -8.1 Ketol-acid reductoisomerase compare
PP_4381 -1.9 -8.3 Flagellar hook-associated protein FlgK compare
PP_0214 -1.9 -5.4 4-aminobutyrate aminotransferase compare
PP_0393 -1.9 -3.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0111 -1.9 -4.6 Electron transport protein SCO1/SenC compare
PP_1468 -1.9 -3.0 Tyrosine recombinase XerD compare
PP_4356 -1.9 -1.3 Flagellar protein FliO compare
PP_1650 -1.8 -15.5 Sensor protein GacS compare
PP_3243 -1.8 -3.0 Acetyltransferase, GNAT family compare
PP_4891 -1.8 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0126 -1.8 -3.5 Cytochrome c4 compare
PP_0697 -1.8 -4.7 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_5283 -1.8 -6.2 periplasmic dipeptide transport protein compare
PP_4475 -1.8 -5.7 succinylglutamate desuccinylase compare
PP_5093 -1.8 -1.5 twitching motility protein compare
PP_1994 -1.8 -3.7 tRNA pseudouridine (38-40)synthase compare
PP_0832 -1.8 -3.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2107 -1.8 -1.5 conserved protein of unknown function compare
PP_1986 -1.8 -2.3 3-isopropylmalate dehydratase small subunit compare
PP_3603 -1.8 -5.9 Transcriptional regulator, GntR family compare
PP_0310 -1.8 -8.5 putative dimethylglycine dehydrogenase subunit compare
PP_0691 -1.7 -2.5 Glutamate 5-kinase compare
PP_4364 -1.7 -2.6 putative Anti-sigma F factor antagonist compare
PP_4352 -1.7 -5.4 flagellin export apparatus, substrate specificity protein compare
PP_0949 -1.7 -5.7 putative ATP-binding protein UPF0042 compare
PP_1548 -1.7 -2.6 conserved protein of unknown function compare
PP_1719 -1.7 -6.5 Tail-specific protease prc compare
PP_4369 -1.7 -2.9 Flagellar M-ring protein compare
PP_0980 -1.7 -4.3 Probable cytosol aminopeptidase compare
PP_2330 -1.7 -3.3 conserved protein of unknown function compare
PP_5338 -1.7 -2.9 aspartate ammonia-lyase compare
PP_0326 -1.7 -5.6 sarcosine oxidase subunit gamma compare
PP_4365 -1.7 -2.9 Flagellar protein FliJ compare
PP_0293 -1.6 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4619 -1.6 -4.6 Maleylacetoacetate isomerase compare
PP_1206 -1.6 -6.1 basic-amino-acid specific porin OprD compare
PP_5429 -1.6 -4.5 protein of unknown function compare
PP_0405 -1.6 -6.8 conserved protein of unknown function compare
PP_0916 -1.6 -2.8 Amino acid transporter LysE compare
PP_0834 -1.6 -2.3 Sec translocation complex subunit YajC compare
PP_4710 -1.6 -7.6 tRNA pseudouridine 55 synthase compare
PP_4938 -1.6 -7.3 putative Glycosyl transferase compare
PP_2302 -1.6 -4.1 DNA-binding, ATP-dependent protease compare
PP_0978 -1.6 -3.2 conserved protein of unknown function compare
PP_0184 -1.6 -5.7 Argininosuccinate lyase compare
PP_1702 -1.6 -2.9 Recombination-associated protein RdgC compare
PP_5701 -1.6 -2.5 conserved protein of unknown function compare
PP_2337 -1.6 -2.0 aconitate isomerase compare
PP_1669 -1.6 -3.5 NLP/P60 family protein compare
PP_0958 -1.6 -3.6 phospholipid ABC transporter ATP-binding subunit compare
PP_4532 -1.6 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1366 -1.5 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_4388 -1.5 -5.4 Flagellar hook protein FlgE compare
PP_5162 -1.5 -3.6 conserved exported protein of unknown function compare
PP_0725 -1.5 -3.5 conserved hypothetical TPR repeat protein compare
PP_4892 -1.5 -3.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4050 -1.5 -8.2 glycogen synthase compare
PP_4480 -1.5 -5.8 arginine N-succinyltransferase, subunit alpha compare
PP_4265 -1.5 -2.2 DNA-binding transcriptional dual regulator compare
PP_4373 -1.5 -8.2 Transcriptional regulator FleQ compare
PP_1111 -1.5 -5.6 putative Synthetase compare
PP_4836 -1.5 -1.6 conserved exported protein of unknown function compare
PP_3892 -1.5 -1.3 conserved protein of unknown function compare
PP_2999 -1.5 -1.2 Glyoxalase family protein compare
PP_5705 -1.5 -1.6 protein of unknown function compare
PP_4390 -1.5 -3.7 flagellar basal-body rod protein FlgC compare
PP_1763 -1.5 -3.2 putative oxidoreductase compare
PP_0063 -1.4 -2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0292 -1.4 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2660 -1.4 -5.5 conserved protein of unknown function compare
PP_2331 -1.4 -3.4 conserved membrane protein of unknown function compare
PP_2889 -1.4 -2.3 putative Transmembrane regulator PrtR compare
PP_1605 -1.4 -2.5 Ribonuclease HII compare
PP_4993 -1.4 -4.0 Glutathione synthetase compare


Specific Phenotypes

For 29 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Pseudomonas putida KT2440

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms