Experiment set30IT054 for Pseudomonas putida KT2440

Compare to:

Tetrahymena sp., Mixed culture-2

200 most important genes:

  gene name fitness t score description  
PP_5090 -7.1 -2.5 putative cell division protein compare
PP_3244 -6.9 -3.4 Magnesium transporter, MgtC family compare
PP_4143 -6.7 -3.8 conserved protein of unknown function compare
PP_4620 -6.6 -6.5 Fumarylacetoacetase compare
PP_4994 -6.3 -5.9 conserved protein of unknown function compare
PP_0852 -6.2 -4.7 Transcriptional regulator, Cro/CI family compare
PP_1898 -6.1 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PP_1224 -6.0 -7.1 periplasmic subunit of the TolQRA transport system compare
PP_4058 -5.9 -4.1 1,4-alpha-glucan branching enzyme compare
PP_4902 -5.8 -4.4 Oligoribonuclease compare
PP_0856 -5.7 -5.5 conserved lipoprotein of unknown function compare
PP_1410 -5.6 -1.1 conserved protein of unknown function compare
PP_2645 -5.6 -11.4 magnesium transporter, ATP-dependent compare
PP_4874 -5.5 -2.2 50S ribosomal protein L9 compare
PP_0082 -5.2 -8.0 tryptophan synthase alpha chain compare
PP_0127 -5.1 -5.0 Thiol:disulfide interchange protein compare
PP_2646 -5.0 -2.8 conserved protein of unknown function compare
PP_4342 -4.9 -3.4 flagellar synthesis regulator, putative ATPase compare
PP_5322 -4.9 -7.9 putative metal ion transporter compare
PP_4532 -4.9 -2.8 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1912 -4.8 -3.3 Phosphate acyltransferase compare
PP_1650 -4.8 -18.9 Sensor protein GacS compare
PP_4099 -4.7 -19.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2217 -4.6 -2.8 enoyl-CoA hydratase compare
PP_3245 -4.6 -1.3 conserved protein of unknown function compare
PP_0958 -4.5 -8.7 phospholipid ABC transporter ATP-binding subunit compare
PP_1428 -4.4 -2.2 Sigma factor AlgU negative regulatory protein compare
PP_2402 -4.4 -2.4 putative Sensor histidine kinase compare
PP_4693 -4.4 -8.4 RNA polymerase-binding transcription factor DksA compare
PP_2337 -4.3 -2.5 aconitate isomerase compare
PP_0083 -4.3 -8.7 tryptophan synthase beta chain compare
PP_0959 -4.3 -2.9 phospholipid ABC transporter compare
PP_4789 -4.2 -5.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4804 -4.2 -2.9 RlpA-like lipoprotein compare
PP_0165 -4.2 -16.7 GGDEF domain protein compare
PP_0691 -4.1 -2.5 Glutamate 5-kinase compare
PP_1764 -4.1 -3.5 Phosphoglycolate phosphatase 2 compare
PP_0719 -4.1 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2336 -4.0 -2.8 aconitate hydratase 1 compare
PP_2331 -4.0 -6.8 conserved membrane protein of unknown function compare
PP_0167 -3.9 -16.2 Toxin secretion ATP-binding protein compare
PP_4785 -3.8 -5.3 conserved exported protein of unknown function compare
PP_0435 -3.8 -7.3 Peptidase, M23/M37 family compare
PP_4261 -3.8 -5.7 cation-transporting P-type ATPase compare
PP_1232 -3.7 -6.5 conserved exported protein of unknown function compare
PP_0422 -3.7 -4.7 Indole-3-glycerol phosphate synthase compare
PP_5328 -3.6 -3.0 putative phosphate transport system permease protein compare
PP_5582 -3.6 -1.0 conserved protein of unknown function compare
PP_0168 -3.6 -19.1 putative surface adhesion protein compare
PP_0917 -3.6 -4.3 Chromosome initiation inhibitor compare
PP_5508 -3.6 -1.0 conserved protein of unknown function compare
PP_2903 -3.6 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0833 -3.6 -2.8 queuine tRNA-ribosyltransferase compare
PP_0166 -3.6 -11.2 HlyD family secretion protein compare
PP_4937 -3.6 -5.2 toluene tolerance protein compare
PP_4642 -3.6 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_0962 -3.6 -3.3 toluene-tolerance protein compare
PP_0406 -3.5 -3.7 Nucleotidyltransferase family protein compare
PP_4396 -3.5 -3.3 conserved protein of unknown function compare
PP_0960 -3.5 -4.7 phospholipid ABC transporter binding protein compare
PP_4519 -3.5 -13.5 Agglutination protein compare
PP_2330 -3.4 -3.5 conserved protein of unknown function compare
PP_1318 -3.4 -7.6 Cytochrome b compare
PP_0809 -3.4 -7.7 disulfide bond formation protein B compare
PP_5051 -3.4 -2.3 conserved protein of unknown function compare
PP_0961 -3.3 -6.0 toluene tolerance protein compare
PP_5528 -3.3 -1.3 conserved protein of unknown function compare
PP_0630 -3.3 -1.1 DNA gyrase inhibitor YacG compare
PP_1215 -3.3 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_0122 -3.3 -2.9 conserved exported protein of unknown function compare
PP_4273 -3.2 -0.9 Transcriptional regulator, MerR family compare
PP_4517 -3.2 -2.0 conserved protein of unknown function compare
PP_0421 -3.2 -10.0 Anthranilate phosphoribosyltransferase compare
PP_4895 -3.2 -4.9 tRNA dimethylallyltransferase compare
PP_5331 -3.2 -2.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4470 -3.2 -2.5 putative transcriptional regulator (Arc domain-containing) compare
PP_4880 -3.1 -10.5 exoribonuclease R compare
PP_5139 -3.1 -5.4 cadmium translocating P-type ATPase conserved
PP_4944 -3.1 -5.0 Carbamoyltransferase compare
PP_4999 -3.1 -1.4 dihydroorotase-like protein compare
PP_4787 -3.1 -2.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5475 -3.0 -1.2 conserved protein of unknown function compare
PP_5058 -3.0 -6.7 Carboxy-terminal-processing protease compare
PP_5546 -2.9 -1.9 conserved protein of unknown function compare
PP_4008 -2.9 -6.3 ATP-dependent serine protease compare
PP_5216 -2.9 -2.8 exopolyphosphatase compare
PP_1995 -2.9 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0434 -2.9 -4.6 Anhydro-N-acetylmuramic acid kinase compare
PP_4263 -2.9 -3.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2145 -2.9 -3.6 beta-N-acetylglucosaminidase compare
PP_2332 -2.9 -4.7 conserved exported protein of unknown function compare
PP_1719 -2.8 -8.2 Tail-specific protease prc compare
PP_0313 -2.8 -2.7 putative electron transfer flavoprotein beta subunit compare
PP_4619 -2.8 -2.6 Maleylacetoacetate isomerase compare
PP_0949 -2.8 -5.3 putative ATP-binding protein UPF0042 compare
PP_1237 -2.8 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1994 -2.7 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_4724 -2.7 -1.9 Carbamoyl-phosphate synthase small chain compare
PP_4383 -2.7 -3.8 Flagellar P-ring protein compare
PP_4482 -2.7 -3.7 Transcriptional regulator, AraC family compare
PP_0978 -2.7 -2.0 conserved protein of unknown function compare
PP_0405 -2.7 -9.9 conserved protein of unknown function compare
PP_4353 -2.7 -5.0 Flagellar biosynthetic protein fliR compare
PP_1038 -2.7 -1.6 conserved protein of unknown function compare
PP_4723 -2.7 -1.8 Carbamoyl-phosphate synthase large chain compare
PP_1319 -2.7 -5.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_t29 -2.6 -1.7 tRNA-Ala compare
PP_5429 -2.6 -3.5 protein of unknown function compare
PP_5310 -2.6 -7.2 junction-specific ATP-dependent DNA helicase compare
PP_1317 -2.6 -3.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0846 -2.6 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_3365 -2.6 -0.9 Acetolactate synthase compare
PP_2163 -2.5 -4.4 VacJ lipoprotein compare
PP_0593 -2.5 -1.0 putative ribosome-binding factor compare
PP_3519 -2.5 -1.0 putative Lipoprotein compare
PP_0420 -2.5 -9.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5114 -2.5 -2.6 putative adenine methyltransferase compare
PP_2280 -2.5 -1.9 conserved protein of unknown function compare
PP_4799 -2.4 -1.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5177 -2.4 -4.7 spermidine/putrescine ABC transporter - permease subunit compare
PP_0417 -2.4 -13.5 Anthranilate synthase component 1 compare
PP_4909 -2.4 -7.3 phosphoserine phosphatase compare
PP_5329 -2.4 -4.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5055 -2.4 -3.6 Sulfurtransferase compare
PP_2087 -2.3 -2.8 CmpX protein compare
PP_t10 -2.3 -1.3 tRNA-Pro compare
PP_1783 -2.3 -2.8 dTDP-glucose pyrophosphorylase compare
PP_4361 -2.3 -4.3 Flagellar hook-length control protein FliK compare
PP_2328 -2.3 -4.2 Phosphoadenosine phosphosulfate reductase compare
PP_2725 -2.3 -2.9 Protease PfpI compare
PP_0855 -2.3 -2.6 conserved protein of unknown function compare
PP_4320 -2.3 -3.3 cytochrome c-type biogenesis protein compare
PP_0832 -2.3 -4.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4129 -2.3 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3198 -2.3 -1.7 Ferredoxin, 2Fe-2S compare
PP_0293 -2.3 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4964 -2.3 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_2018 -2.3 -2.7 adhesin-associated BNR repeat protein (from data) compare
PP_5100 -2.2 -1.9 dITP/XTP pyrophosphatase compare
PP_2214 -2.2 -3.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1468 -2.2 -1.8 Tyrosine recombinase XerD compare
PP_4803 -2.2 -5.8 D-alanyl-D-alanine carboxypeptidase compare
PP_0900 -2.2 -1.8 PAP2 family protein compare
PP_5565 -2.2 -3.3 conserved protein of unknown function compare
PP_4561 -2.2 -0.7 stress response protein compare
PP_4726 -2.2 -2.5 Chaperone protein DnaJ compare
PP_3765 -2.2 -3.6 H-NS family protein MvaT compare
PP_4941 -2.1 -6.1 conserved exported protein of unknown function compare
PP_2088 -2.1 -2.4 RNA polymerase sigma factor SigX compare
PP_4891 -2.1 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3505 -2.1 -1.3 conserved protein of unknown function compare
PP_0725 -2.1 -5.0 conserved hypothetical TPR repeat protein compare
PP_2442 -2.1 -1.3 conserved protein of unknown function, DUF480 family compare
PP_0848 -2.1 -2.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2668 -2.1 -2.1 ABC efflux transporter, ATP-binding protein compare
PP_0834 -2.1 -1.9 Sec translocation complex subunit YajC compare
PP_4375 -2.0 -6.9 flagellar chaperone, inhibits premature FliC assembly compare
PP_2633 -2.0 -0.9 conserved protein of unknown function compare
PP_4343 -2.0 -3.3 Flagellar biosynthesis protein FlhF compare
PP_1054 -2.0 -1.5 Type II secretion pathway protein XcpZ compare
PP_1355 -2.0 -6.5 Muropeptide permease AmpG compare
PP_4904 -2.0 -6.0 Flagellar motor rotation protein compare
PP_4424 -2.0 -1.8 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3307 -2.0 -1.5 conserved protein of unknown function compare
PP_1678 -2.0 -2.5 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4356 -2.0 -1.6 Flagellar protein FliO compare
PP_2000 -2.0 -2.3 amidophosphoribosyl transferase compare
PP_4352 -2.0 -7.2 flagellin export apparatus, substrate specificity protein compare
PP_2889 -1.9 -3.6 putative Transmembrane regulator PrtR compare
PP_4700 -1.9 -3.1 pantothenate synthetase compare
PP_2144 -1.9 -3.0 Transcriptional regulator, TetR family compare
PP_1268 -1.9 -2.7 putative HtrA suppressor protein sohA compare
PP_1206 -1.9 -4.5 basic-amino-acid specific porin OprD compare
PP_4829 -1.9 -1.8 putative precorrin-3B synthase compare
PP_4340 -1.9 -2.0 response regulator for chemotactic signal transduction compare
PP_2387 -1.9 -1.5 conserved protein of unknown function compare
PP_1986 -1.9 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_5473 -1.9 -1.5 putative transcriptional regulator, LuxR family compare
PP_4004 -1.9 -2.6 DNA translocase FtsK compare
PP_4471 -1.9 -5.0 Magnesium transporter compare
PP_4847 -1.9 -1.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_3243 -1.9 -2.3 Acetyltransferase, GNAT family compare
PP_2322 -1.9 -2.0 Major outer membrane lipoprotein compare
PP_4126 -1.9 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_4370 -1.9 -3.0 Flagellar hook-basal body complex protein FliE compare
PP_3102 -1.9 -2.2 conserved protein of unknown function compare
PP_0607 -1.9 -1.5 putative Type IV pili biogenesis protein FimT compare
PP_3892 -1.8 -1.0 conserved protein of unknown function compare
PP_0513 -1.8 -2.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1326 -1.8 -1.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4961 -1.8 -1.2 putative Lipoprotein compare
PP_0393 -1.8 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4341 -1.8 -6.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_2740 -1.8 -1.4 Transcriptional regulator, MerR family compare
PP_5155 -1.8 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5084 -1.8 -5.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0753 -1.8 -3.7 putative Lipoprotein compare
PP_4480 -1.7 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_1528 -1.7 -1.1 conserved protein of unknown function compare
PP_1663 -1.7 -4.4 conserved exported protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 in Pseudomonas putida KT2440

For micoeukaryotes Pelleted after growth overnight in LB+Kan50 across organisms