Experiment set2S742 for Escherichia coli ECRC100

Compare to:

Sodium-DL-Lactate

200 most important genes:

  gene name fitness t score description  
OKFHMN_19460 serA -7.1 -11.7 phosphoglycerate dehydrogenase compare
OKFHMN_17565 aroE -7.0 -11.6 shikimate dehydrogenase compare
OKFHMN_15600 pyrE -6.9 -6.6 Orotate phosphoribosyltransferase compare
OKFHMN_17115 aroB -6.8 -15.2 3-dehydroquinate synthase compare
OKFHMN_05295 pyrD -6.8 -3.8 quinone-dependent dihydroorotate dehydrogenase compare
OKFHMN_02670 trpB -6.8 -4.4 tryptophan synthase subunit beta compare
OKFHMN_24500 hisH -6.5 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
OKFHMN_05485 aroA -6.2 -13.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKFHMN_25965 -6.2 -1.6 Phage protein compare
OKFHMN_10940 carB -6.2 -15.9 carbamoyl-phosphate synthase large subunit compare
OKFHMN_13665 metF -6.1 -11.0 methylenetetrahydrofolate reductase compare
OKFHMN_10945 carA -5.8 -13.8 carbamoyl phosphate synthase small subunit compare
OKFHMN_13315 purD -5.8 -7.8 Phosphoribosylamine--glycine ligase compare
OKFHMN_13575 argH -5.7 -9.6 argininosuccinate lyase compare
OKFHMN_13310 purH -5.7 -16.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKFHMN_10730 leuD -5.6 -5.2 3-isopropylmalate dehydratase small subunit compare
OKFHMN_24275 dcd -5.5 -2.3 dCTP deaminase compare
OKFHMN_10345 dksA -5.5 -5.8 RNA polymerase-binding protein DksA compare
OKFHMN_06960 gltA -5.4 -7.5 citrate synthase compare
OKFHMN_21510 glyA -5.4 -2.3 serine hydroxymethyltransferase compare
OKFHMN_06920 odhB -5.4 -3.0 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
OKFHMN_14100 glnA -5.3 -3.7 glutamate--ammonia ligase compare
OKFHMN_10720 leuB -5.3 -11.9 3-isopropylmalate dehydrogenase compare
OKFHMN_27145 ppsA -5.2 -6.6 phosphoenolpyruvate synthase compare
OKFHMN_24510 hisC -5.2 -5.8 histidinol-phosphate transaminase compare
OKFHMN_24515 hisD -5.2 -4.4 Histidinol dehydrogenase compare
OKFHMN_21930 purC -5.2 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
OKFHMN_05490 serC -5.1 -6.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKFHMN_22715 purF -5.1 -10.7 amidophosphoribosyltransferase compare
OKFHMN_22615 aroC -5.1 -3.6 chorismate synthase compare
OKFHMN_10725 leuC1 -5.1 -10.6 3-isopropylmalate dehydratase large subunit 1 compare
OKFHMN_11945 fbp -5.1 -11.1 class 1 fructose-bisphosphatase compare
OKFHMN_10685 cra -5.0 -9.3 catabolite repressor/activator compare
OKFHMN_03730 pyrC -5.0 -6.4 dihydroorotase compare
OKFHMN_21220 tyrA -4.9 -14.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
OKFHMN_11100 thrC -4.8 -7.8 threonine synthase compare
OKFHMN_09675 proB -4.8 -5.2 Glutamate 5-kinase compare
OKFHMN_21470 purL -4.7 -14.0 phosphoribosylformylglycinamidine synthase compare
OKFHMN_21810 purM -4.7 -10.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
OKFHMN_21225 pheA -4.6 -6.3 bifunctional chorismate mutase/prephenate dehydratase compare
OKFHMN_14645 ilvE -4.6 -13.8 branched-chain-amino-acid transaminase compare
OKFHMN_13595 ppc -4.5 -13.6 phosphoenolpyruvate carboxylase compare
OKFHMN_09670 proA -4.5 -9.5 glutamate-5-semialdehyde dehydrogenase compare
OKFHMN_02080 -4.5 -3.0 transcriptional regulator compare
OKFHMN_08610 proC -4.4 -4.2 pyrroline-5-carboxylate reductase compare
OKFHMN_24520 hisG -4.4 -4.2 ATP phosphoribosyltransferase compare
OKFHMN_12035 cysQ -4.4 -6.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
OKFHMN_21760 guaB -4.4 -4.4 IMP dehydrogenase compare
OKFHMN_02550 pyrF -4.4 -3.3 orotidine-5'-phosphate decarboxylase compare
OKFHMN_00135 sopA -4.3 -3.0 plasmid-partitioning protein SopA compare
OKFHMN_23440 fruB -4.3 -7.3 fused PTS fructose transporter subunit IIA/HPr protein compare
OKFHMN_11105 thrB -4.2 -8.1 homoserine kinase compare
OKFHMN_24495 hisA -4.2 -2.2 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKFHMN_27195 aroD -4.2 -2.6 3-dehydroquinate dehydratase compare
OKFHMN_11200 serB -4.2 -6.1 phosphoserine phosphatase compare
OKFHMN_20380 cysH -4.1 -3.6 phosphoadenosine phosphosulfate reductase compare
OKFHMN_10715 -4.0 -8.7 2-isopropylmalate synthase compare
OKFHMN_14625 ilvC -4.0 -16.0 ketol-acid reductoisomerase compare
OKFHMN_18090 argG -3.9 -8.7 argininosuccinate synthase compare
OKFHMN_12230 purA -3.8 -4.8 adenylosuccinate synthase compare
OKFHMN_14325 metE -3.8 -14.5 5-methyltetrahydropteroyltriglutamate--homocystei ne S-methyltransferase compare
OKFHMN_24485 hisIE -3.8 -4.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
OKFHMN_14330 metR -3.8 -9.1 HTH-type transcriptional regulator MetR compare
OKFHMN_14640 ilvD -3.8 -17.6 dihydroxy-acid dehydratase compare
OKFHMN_14635 ilvA -3.7 -11.0 threonine ammonia-lyase, biosynthetic compare
OKFHMN_24505 hisB -3.7 -4.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
OKFHMN_07835 purE -3.6 -2.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
OKFHMN_13275 metA -3.6 -7.0 homoserine O-succinyltransferase compare
OKFHMN_20370 cysJ -3.5 -11.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
OKFHMN_11865 pyrB -3.4 -5.1 aspartate carbamoyltransferase compare
OKFHMN_20375 cysI -3.4 -9.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OKFHMN_02655 trpE -3.3 -5.3 anthranilate synthase component I compare
OKFHMN_06810 tolA -3.3 -5.1 cell envelope integrity protein TolA compare
OKFHMN_18960 metC -3.2 -9.0 cystathionine beta-lyase compare
OKFHMN_22660 pdxB -3.1 -5.6 4-phosphoerythronate dehydrogenase PdxB compare
OKFHMN_15280 escK -3.1 -1.6 type III secretion system sorting platform component compare
OKFHMN_20450 cysC -3.1 -6.9 Adenylyl-sulfate kinase compare
OKFHMN_13675 metB -3.1 -12.9 cystathionine gamma-synthase compare
OKFHMN_19945 lysA -3.0 -8.2 diaminopimelate decarboxylase compare
OKFHMN_02675 trpA -3.0 -2.1 tryptophan synthase subunit alpha compare
OKFHMN_11110 thrA -3.0 -13.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
OKFHMN_22200 cysK -3.0 -8.9 cysteine synthase A compare
OKFHMN_00130 sopA -3.0 -4.5 plasmid-partitioning protein SopA compare
OKFHMN_19940 lysR -3.0 -9.5 DNA-binding transcriptional regulator LysR compare
OKFHMN_14170 dsbA -2.9 -2.7 thiol:disulfide interchange protein DsbA compare
OKFHMN_05575 lrp -2.9 -5.2 leucine-responsive transcriptional regulator Lrp compare
OKFHMN_25550 msrQ -2.8 -1.5 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
OKFHMN_28270 dsbB -2.7 -1.9 disulfide bond formation protein DsbB compare
OKFHMN_12260 miaA -2.7 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
OKFHMN_01535 mddA -2.7 -2.6 L-methionine sulfoximine/L-methionine sulfone acetyltransferase compare
OKFHMN_14630 ilvY -2.6 -7.7 HTH-type transcriptional activator IlvY compare
OKFHMN_13580 -2.6 -8.0 acetylglutamate kinase compare
OKFHMN_10830 pdxA -2.6 -9.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
OKFHMN_13585 argC -2.6 -9.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
OKFHMN_10825 surA -2.5 -7.4 peptidylprolyl isomerase SurA compare
OKFHMN_20440 cysD -2.5 -10.8 sulfate adenylyltransferase subunit CysD compare
OKFHMN_11835 argF -2.5 -8.7 ornithine carbamoyltransferase compare
OKFHMN_26370 -2.5 -1.2 hypothetical protein compare
OKFHMN_17830 sspA -2.5 -2.1 stringent starvation protein A compare
OKFHMN_19805 flhB -2.4 -1.2 EscU/YscU/HrcU family type III secretion system export apparatus switch protein compare
OKFHMN_13590 argE -2.4 -11.0 acetylornithine deacetylase compare
OKFHMN_22870 nuoH -2.4 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
OKFHMN_21425 pdxJ -2.4 -2.7 pyridoxine 5'-phosphate synthase compare
OKFHMN_08320 -2.3 -5.1 Lon protease compare
OKFHMN_06805 tolB -2.2 -6.3 Tol-Pal system protein TolB compare
OKFHMN_06815 tolR -2.2 -3.5 colicin uptake protein TolR compare
OKFHMN_07840 purK -2.2 -6.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
OKFHMN_15780 lldP -2.2 -11.2 L-lactate permease compare
OKFHMN_08485 parD -2.2 -1.5 Antitoxin ParD compare
OKFHMN_17680 fis -2.2 -1.7 DNA-binding transcriptional regulator Fis compare
OKFHMN_25520 tccP -2.2 -2.0 Tir-cytoskeleton coupling protein TccP compare
OKFHMN_17180 cysG -2.1 -9.4 siroheme synthase CysG compare
OKFHMN_17795 mdh -2.0 -5.5 malate dehydrogenase compare
OKFHMN_10360 folK -2.0 -2.0 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKFHMN_20060 argA -2.0 -6.8 amino-acid N-acetyltransferase compare
OKFHMN_20445 cysN -2.0 -6.6 sulfate adenylyltransferase subunit CysN compare
OKFHMN_04420 -1.9 -1.1 Uncharacterized function compare
OKFHMN_14670 maoP -1.9 -5.9 macrodomain Ori organization protein MaoP compare
OKFHMN_19795 sctT -1.9 -1.0 type III secretion system export apparatus subunit SctT compare
OKFHMN_24620 -1.9 -1.4 DUF1382 domain-containing protein compare
OKFHMN_14395 corA -1.8 -2.6 magnesium/cobalt transporter CorA compare
OKFHMN_16725 -1.8 -2.2 DUF1778 domain-containing protein compare
OKFHMN_26515 -1.8 -1.7 UPF0266 membrane protein YobD compare
OKFHMN_13345 hupA -1.8 -2.5 DNA-binding protein HU-alpha compare
OKFHMN_01370 yddM -1.7 -1.6 HigA family addiction module antitoxin compare
OKFHMN_05235 ompA -1.7 -6.0 outer membrane protein A compare
OKFHMN_26250 nudB -1.7 -4.6 dihydroneopterin triphosphate diphosphatase compare
OKFHMN_06800 pal -1.7 -2.9 peptidoglycan-associated lipoprotein Pal compare
OKFHMN_26460 proQ -1.7 -2.5 RNA chaperone ProQ compare
OKFHMN_00625 potA -1.6 -1.8 spermidine/putrescine ABC transporter ATP-binding protein PotA compare
OKFHMN_19160 -1.6 -2.0 IS66 family transposase compare
OKFHMN_22875 nuoI -1.6 -1.2 NADH-quinone oxidoreductase subunit NuoI compare
OKFHMN_02660 trpD -1.5 -3.6 bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD compare
OKFHMN_05925 sgaB -1.5 -1.4 PTS sugar transporter IIB compare
OKFHMN_24900 -1.5 -1.4 head-tail connector protein compare
OKFHMN_27635 ydgA -1.5 -1.9 Protein YdgA compare
OKFHMN_04470 fhaC -1.5 -2.7 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
OKFHMN_02760 -1.5 -1.3 T3SS effector protein NleG8 compare
OKFHMN_28755 eCs1768 -1.5 -1.5 DNA-binding protein compare
OKFHMN_14540 wzxE -1.5 -2.6 lipid III flippase WzxE compare
OKFHMN_28650 oppF -1.5 -1.0 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF compare
OKFHMN_17110 aroK -1.5 -1.3 shikimate kinase AroK compare
OKFHMN_02665 trpCF -1.5 -3.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
OKFHMN_11115 thrL -1.4 -2.4 thr operon leader peptide compare
OKFHMN_10400 panB -1.4 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKFHMN_06475 -1.4 -1.0 phage tail protein compare
OKFHMN_15775 lldR -1.4 -4.2 transcriptional regulator LldR compare
OKFHMN_21740 bamB -1.4 -4.7 outer membrane protein assembly factor BamB compare
OKFHMN_10405 panC -1.4 -2.8 pantoate--beta-alanine ligase compare
OKFHMN_10060 metQ -1.4 -6.1 methionine ABC transporter substrate-binding lipoprotein MetQ compare
OKFHMN_19515 ubiI -1.4 -1.9 FAD-dependent 2-octaprenylphenol hydroxylase compare
OKFHMN_03395 ydaS -1.4 -1.3 transcriptional regulator compare
OKFHMN_14675 hdfR -1.3 -5.7 HTH-type transcriptional regulator HdfR compare
OKFHMN_07600 fepC -1.3 -3.4 ferrienterobactin ABC transporter ATPase compare
OKFHMN_17810 zapG -1.3 -1.2 Z-ring associated protein ZapG compare
OKFHMN_25595 yedJ -1.3 -1.0 phosphohydrolase compare
OKFHMN_04600 -1.3 -1.2 hypothetical protein compare
OKFHMN_00775 -1.3 -1.4 replication protein compare
OKFHMN_19240 rdgB -1.3 -4.2 XTP/dITP diphosphatase compare
OKFHMN_00405 repA2 -1.3 -5.5 Replication regulatory protein repA2 compare
OKFHMN_28065 -1.3 -1.5 Tail tube protein compare
OKFHMN_26480 kdgR -1.3 -6.5 DNA-binding transcriptional regulator KdgR compare
OKFHMN_10415 panD -1.3 -3.9 aspartate 1-decarboxylase compare
OKFHMN_06910 sucD -1.3 -1.1 succinate--CoA ligase subunit alpha compare
OKFHMN_15695 rfaF -1.2 -2.2 ADP-heptose--LPS heptosyltransferase RfaF compare
OKFHMN_22565 sixA -1.2 -0.9 phosphohistidine phosphatase SixA compare
OKFHMN_09760 dinJ -1.2 -1.7 type II toxin-antitoxin system antitoxin DinJ compare
OKFHMN_18140 pnp -1.2 -3.5 polyribonucleotide nucleotidyltransferase compare
OKFHMN_27695 pntB -1.2 -4.2 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta compare
OKFHMN_27455 sodC -1.2 -1.8 superoxide dismutase [Cu-Zn] SodC compare
OKFHMN_27820 dnaQ -1.2 -0.9 exonuclease compare
OKFHMN_24320 wcaB -1.1 -2.3 colanic acid biosynthesis acetyltransferase WcaB compare
OKFHMN_27265 sufD -1.1 -1.1 Fe-S cluster assembly protein SufD compare
OKFHMN_18145 nlpI -1.1 -5.9 lipoprotein NlpI compare
OKFHMN_00700 -1.1 -1.3 capsid protein compare
OKFHMN_06725 galK -1.1 -2.1 galactokinase compare
OKFHMN_12255 hfq -1.1 -1.7 RNA chaperone Hfq compare
OKFHMN_14890 pstA -1.1 -1.4 phosphate ABC transporter permease PstA compare
OKFHMN_22830 lrhA -1.1 -4.4 transcriptional regulator LrhA compare
OKFHMN_24075 -1.1 -3.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
OKFHMN_22285 Ala_trna -1.1 -1.4 tRNA-Ala(ggc) compare
OKFHMN_17925 rapZ -1.1 -3.9 RNase adapter RapZ compare
OKFHMN_26295 znuB -1.1 -2.5 zinc ABC transporter permease subunit ZnuB compare
OKFHMN_08520 -1.0 -1.7 hypothetical protein compare
OKFHMN_27030 ydiZ -1.0 -1.5 Uncharacterized protein YdiZ compare
OKFHMN_03240 -1.0 -1.7 hypothetical protein compare
OKFHMN_24035 -1.0 -1.7 pilus assembly protein compare
OKFHMN_24265 -1.0 -1.4 Putative diguanylate cyclase YegE compare
OKFHMN_07745 tnp-ISAs1 -1.0 -0.8 ISAs1 family transposase compare
OKFHMN_03440 cobB -1.0 -2.1 NAD-dependent protein deacylase compare
OKFHMN_03590 plsX -1.0 -2.2 phosphate acyltransferase PlsX compare
OKFHMN_25655 fliR -1.0 -1.0 flagellar type III secretion system protein FliR compare
OKFHMN_10140 rnhB -1.0 -1.8 ribonuclease HII compare
OKFHMN_20875 stpA -1.0 -1.1 DNA-binding protein StpA compare
OKFHMN_14655 ilvG -1.0 -5.8 acetolactate synthase 2 catalytic subunit compare
OKFHMN_24895 beeE -1.0 -0.8 phage portal protein compare
OKFHMN_04435 fabB -1.0 -0.9 beta-ketoacyl synthase compare
OKFHMN_04145 terA -1.0 -1.5 tellurium resistance protein TerA compare
OKFHMN_10530 nadC -1.0 -5.5 carboxylating nicotinate-nucleotide diphosphorylase compare
OKFHMN_19385 epd -1.0 -5.2 erythrose-4-phosphate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC100 in carbon source experiments

For carbon source Sodium-DL-Lactate across organisms