Experiment set2S142 for Rhodanobacter sp000427505 FW510-R12

Compare to:

Biofilm; Day2; SGW; pH7

200 most important genes:

  gene name fitness t score description  
LRK53_RS00380 -4.2 -1.6 DUF308 domain-containing protein compare
LRK53_RS05045 -3.4 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK53_RS19110 -2.9 -3.5 hypothetical protein compare
LRK53_RS11795 -2.8 -1.9 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS14840 -2.7 -3.2 trypsin-like peptidase domain-containing protein compare
LRK53_RS04390 -2.6 -4.0 glycosyltransferase family 2 protein compare
LRK53_RS06670 -2.3 -3.0 RIP metalloprotease RseP compare
LRK53_RS12830 -2.0 -2.7 YkgJ family cysteine cluster protein compare
LRK53_RS02335 -1.9 -2.0 hypothetical protein compare
LRK53_RS05905 -1.7 -2.3 thymidylate synthase compare
LRK53_RS01585 -1.7 -3.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS08205 -1.6 -1.9 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS13180 -1.6 -2.2 hypothetical protein compare
LRK53_RS04445 -1.6 -2.3 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS17865 -1.4 -2.3 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS09170 -1.4 -2.8 cupin domain-containing protein compare
LRK53_RS02455 -1.3 -3.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS04185 -1.3 -5.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS09100 -1.3 -3.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS02815 -1.3 -2.1 DmsE family decaheme c-type cytochrome compare
LRK53_RS13005 -1.3 -1.7 ATP-binding cassette domain-containing protein compare
LRK53_RS17860 -1.3 -2.7 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS03010 -1.3 -1.1 hypothetical protein compare
LRK53_RS11780 -1.3 -4.1 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS07105 -1.2 -2.6 RNA polymerase-associated protein RapA compare
LRK53_RS14785 -1.2 -2.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS09905 -1.2 -2.3 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS11140 -1.2 -1.6 hypothetical protein compare
LRK53_RS14010 -1.2 -2.7 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS08350 -1.1 -2.9 tryptophan synthase subunit beta compare
LRK53_RS04200 -1.0 -1.2 hypothetical protein compare
LRK53_RS17625 -1.0 -1.3 benenodin family lasso peptide compare
LRK53_RS06850 -1.0 -1.0 protein translocase subunit SecD compare
LRK53_RS05060 -1.0 -1.6 hypothetical protein compare
LRK53_RS11330 -1.0 -1.7 (d)CMP kinase compare
LRK53_RS07045 -1.0 -1.1 response regulator compare
LRK53_RS14520 -1.0 -1.1 GNAT family N-acetyltransferase compare
LRK53_RS12980 -1.0 -1.3 hypothetical protein compare
LRK53_RS07500 -1.0 -1.1 membrane protein insertion efficiency factor YidD compare
LRK53_RS14865 -1.0 -2.3 CBS domain-containing protein compare
LRK53_RS08420 -1.0 -3.4 MerC domain-containing protein compare
LRK53_RS01565 -1.0 -1.6 hypothetical protein compare
LRK53_RS16160 -1.0 -2.7 hypothetical protein compare
LRK53_RS01570 -1.0 -1.9 DNA polymerase I compare
LRK53_RS06110 -1.0 -1.5 NAD(P) transhydrogenase subunit alpha compare
LRK53_RS12485 -0.9 -1.8 hypothetical protein compare
LRK53_RS01525 -0.9 -1.5 hypothetical protein compare
LRK53_RS06545 -0.9 -2.7 TIGR02099 family protein compare
LRK53_RS18950 -0.9 -2.5 hypothetical protein compare
LRK53_RS18440 -0.9 -2.8 hypothetical protein compare
LRK53_RS09435 -0.9 -1.3 malate dehydrogenase compare
LRK53_RS15080 -0.9 -3.2 flagellar M-ring protein FliF compare
LRK53_RS09830 -0.9 -2.1 phosphoglycerate mutase compare
LRK53_RS05635 -0.9 -2.1 YbjQ family protein compare
LRK53_RS06860 -0.9 -1.7 nucleotidyltransferase family protein compare
LRK53_RS02885 -0.9 -2.4 glycosyltransferase family 2 protein compare
LRK53_RS09730 -0.8 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS03370 -0.8 -1.5 YifB family Mg chelatase-like AAA ATPase compare
LRK53_RS07300 -0.8 -2.5 DEAD/DEAH box helicase compare
LRK53_RS05395 -0.8 -2.2 transcriptional regulator NrdR compare
LRK53_RS07280 -0.8 -1.6 YkgJ family cysteine cluster protein compare
LRK53_RS17875 -0.8 -2.5 MFS transporter compare
LRK53_RS14455 -0.8 -1.7 ATP-binding protein compare
LRK53_RS07550 -0.8 -1.4 acetylornithine deacetylase compare
LRK53_RS18155 -0.8 -1.1 hypothetical protein compare
LRK53_RS18700 -0.8 -1.5 H-NS histone family protein compare
LRK53_RS16020 -0.8 -1.9 RDD family protein compare
LRK53_RS16165 -0.8 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS19090 -0.8 -3.2 hypothetical protein compare
LRK53_RS05735 -0.7 -2.7 response regulator compare
LRK53_RS11635 -0.7 -2.3 M48 family metallopeptidase compare
LRK53_RS16990 -0.7 -3.0 anthranilate phosphoribosyltransferase compare
LRK53_RS18650 -0.7 -1.7 transposase compare
LRK53_RS07085 -0.7 -1.1 YggS family pyridoxal phosphate-dependent enzyme compare
LRK53_RS18675 -0.7 -1.0 DNA polymerase Y family protein compare
LRK53_RS14385 -0.7 -2.2 glucose 1-dehydrogenase compare
LRK53_RS00760 -0.7 -0.9 DUF302 domain-containing protein compare
LRK53_RS17220 -0.7 -2.0 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS09425 -0.7 -2.6 GlsB/YeaQ/YmgE family stress response membrane protein compare
LRK53_RS10050 -0.7 -2.8 DNA-binding domain-containing protein compare
LRK53_RS03065 -0.7 -0.7 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS07625 -0.7 -2.2 hypothetical protein compare
LRK53_RS00895 -0.7 -2.8 hypothetical protein compare
LRK53_RS09865 -0.7 -2.2 thioesterase compare
LRK53_RS01745 -0.7 -4.1 TetR/AcrR family transcriptional regulator compare
LRK53_RS16995 -0.7 -0.9 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS13075 -0.7 -2.7 cytochrome oxidase compare
LRK53_RS08670 -0.7 -1.8 heavy metal-responsive transcriptional regulator compare
LRK53_RS05765 -0.7 -0.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK53_RS14645 -0.7 -0.7 molybdopterin molybdotransferase MoeA compare
LRK53_RS11300 -0.7 -1.5 polysaccharide biosynthesis protein compare
LRK53_RS08250 -0.7 -1.3 HIT family protein compare
LRK53_RS11280 -0.7 -1.7 MBL fold metallo-hydrolase compare
LRK53_RS07580 -0.6 -1.9 IS256 family transposase compare
LRK53_RS05265 -0.6 -0.9 hypothetical protein compare
LRK53_RS05220 -0.6 -1.4 nucleoside deaminase compare
LRK53_RS13085 -0.6 -1.9 SCO family protein compare
LRK53_RS05810 -0.6 -0.8 DUF4097 family beta strand repeat-containing protein compare
LRK53_RS18370 -0.6 -2.1 DUF3150 domain-containing protein compare
LRK53_RS17605 -0.6 -2.0 OmpH family outer membrane protein compare
LRK53_RS11915 -0.6 -1.7 cold-shock protein compare
LRK53_RS17895 -0.6 -0.6 phosphomannomutase/phosphoglucomutase compare
LRK53_RS14770 -0.6 -1.7 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS03160 -0.6 -1.4 homoserine kinase compare
LRK53_RS04970 -0.6 -2.6 response regulator compare
LRK53_RS06835 -0.6 -1.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
LRK53_RS00180 -0.6 -2.3 MbcA/ParS/Xre antitoxin family protein compare
LRK53_RS08430 -0.6 -0.9 30S ribosomal protein THX compare
LRK53_RS12150 -0.6 -2.4 trigger factor compare
LRK53_RS14795 -0.6 -1.8 hypothetical protein compare
LRK53_RS18825 -0.6 -1.3 hypothetical protein compare
LRK53_RS07915 -0.6 -2.5 methionine synthase compare
LRK53_RS11050 -0.6 -1.3 hypothetical protein compare
LRK53_RS01595 -0.6 -2.3 DUF3426 domain-containing protein compare
LRK53_RS03280 -0.6 -2.5 GGDEF domain-containing protein compare
LRK53_RS19095 -0.6 -1.9 hypothetical protein compare
LRK53_RS00145 -0.6 -2.1 DJ-1/PfpI family protein compare
LRK53_RS13625 -0.6 -0.7 carbon storage regulator CsrA compare
LRK53_RS16300 -0.6 -1.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS14790 -0.5 -0.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS04285 -0.5 -2.9 phosphoglycerate kinase compare
LRK53_RS12370 -0.5 -1.2 VOC family protein compare
LRK53_RS14445 -0.5 -2.1 TIGR00730 family Rossman fold protein compare
LRK53_RS15730 -0.5 -1.5 HPr family phosphocarrier protein compare
LRK53_RS00260 -0.5 -1.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
LRK53_RS11255 -0.5 -1.1 DNA oxidative demethylase AlkB compare
LRK53_RS15200 -0.5 -0.9 flagellar protein FlgN compare
LRK53_RS02545 -0.5 -1.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS03715 -0.5 -0.4 cell division ATP-binding protein FtsE compare
LRK53_RS11105 -0.5 -2.1 hypothetical protein compare
LRK53_RS16935 -0.5 -2.2 hypothetical protein compare
LRK53_RS17310 -0.5 -1.5 VOC family protein compare
LRK53_RS16985 -0.5 -1.5 indole-3-glycerol phosphate synthase TrpC compare
LRK53_RS19135 -0.5 -1.2 hypothetical protein compare
LRK53_RS13965 -0.5 -1.4 NAD(P)H-dependent oxidoreductase compare
LRK53_RS11805 -0.5 -1.0 heavy metal translocating P-type ATPase compare
LRK53_RS15805 -0.5 -1.1 NAD(P)-binding domain-containing protein compare
LRK53_RS16940 -0.5 -1.4 FHA domain-containing protein compare
LRK53_RS10200 -0.5 -1.1 TraR/DksA C4-type zinc finger protein compare
LRK53_RS09350 -0.5 -1.6 LysR family transcriptional regulator compare
LRK53_RS12670 -0.5 -1.9 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS04280 -0.5 -2.1 HAD hydrolase-like protein compare
LRK53_RS19165 -0.5 -0.8 hypothetical protein compare
LRK53_RS13840 -0.5 -1.6 hypothetical protein compare
LRK53_RS00620 -0.5 -2.3 alpha/beta hydrolase fold domain-containing protein compare
LRK53_RS16730 -0.5 -1.4 nucleoside hydrolase compare
LRK53_RS09020 -0.5 -1.8 hypothetical protein compare
LRK53_RS16960 -0.5 -2.1 2OG-Fe(II) oxygenase compare
LRK53_RS00240 -0.5 -2.4 DUF3820 family protein compare
LRK53_RS11180 -0.5 -2.2 tetratricopeptide repeat protein compare
LRK53_RS02340 -0.5 -1.3 isopentenyl-diphosphate Delta-isomerase compare
LRK53_RS15645 -0.5 -1.8 AI-2E family transporter compare
LRK53_RS15755 -0.5 -0.6 SDR family oxidoreductase compare
LRK53_RS04275 -0.5 -1.2 co-chaperone DjlA compare
LRK53_RS13230 -0.5 -1.6 hypothetical protein compare
LRK53_RS08660 -0.5 -1.6 YajG family lipoprotein compare
LRK53_RS07920 -0.5 -2.0 homocysteine S-methyltransferase family protein compare
LRK53_RS01325 -0.5 -1.5 magnesium-translocating P-type ATPase compare
LRK53_RS16955 -0.5 -2.1 response regulator transcription factor compare
LRK53_RS06515 -0.5 -0.9 amidase family protein compare
LRK53_RS18055 -0.5 -2.6 pyrimidine dimer DNA glycosylase/endonuclease V compare
LRK53_RS16310 -0.5 -1.9 YraN family protein compare
LRK53_RS03410 -0.5 -1.3 SCP2 sterol-binding domain-containing protein compare
LRK53_RS12025 -0.5 -1.4 DUF2058 family protein compare
LRK53_RS08455 -0.5 -1.1 ATP phosphoribosyltransferase compare
LRK53_RS12585 -0.5 -1.2 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS07385 -0.5 -2.4 MalM family protein compare
LRK53_RS08165 -0.5 -2.1 AsmA family protein compare
LRK53_RS04305 -0.5 -1.6 hypothetical protein compare
LRK53_RS07485 -0.5 -1.6 phosphoglycolate phosphatase compare
LRK53_RS16635 -0.5 -0.9 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS18045 -0.5 -0.8 DUF6429 family protein compare
LRK53_RS19150 -0.4 -1.8 hypothetical protein compare
LRK53_RS13525 -0.4 -1.7 ferredoxin family protein compare
LRK53_RS17485 -0.4 -2.4 hypothetical protein compare
LRK53_RS19145 -0.4 -2.3 hypothetical protein compare
LRK53_RS13030 -0.4 -1.4 hypothetical protein compare
LRK53_RS15880 -0.4 -1.5 IS5 family transposase compare
LRK53_RS11565 -0.4 -1.0 nucleoside diphosphate kinase regulator compare
LRK53_RS02720 -0.4 -2.0 pseudouridine synthase compare
LRK53_RS00395 -0.4 -1.2 SDR family oxidoreductase compare
LRK53_RS02300 -0.4 -1.1 hypothetical protein compare
LRK53_RS01450 -0.4 -2.5 EF-hand domain-containing protein compare
LRK53_RS16485 -0.4 -1.3 GIY-YIG nuclease family protein compare
LRK53_RS18085 -0.4 -2.2 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK53_RS13740 -0.4 -1.7 hypothetical protein compare
LRK53_RS00785 -0.4 -2.1 membrane protein compare
LRK53_RS17540 -0.4 -0.6 YbaN family protein compare
LRK53_RS05015 -0.4 -1.5 LacI family DNA-binding transcriptional regulator compare
LRK53_RS13575 -0.4 -1.2 glutaredoxin 3 compare
LRK53_RS07455 -0.4 -1.7 GGDEF domain-containing phosphodiesterase compare
LRK53_RS08825 -0.4 -1.3 recombination mediator RecR compare
LRK53_RS01445 -0.4 -1.8 ABC transporter permease subunit compare
LRK53_RS11205 -0.4 -2.1 TetR/AcrR family transcriptional regulator compare
LRK53_RS07255 -0.4 -2.0 GNAT family N-acetyltransferase compare
LRK53_RS18295 -0.4 -0.9 hypothetical protein compare
LRK53_RS03535 -0.4 -1.8 DMT family transporter compare
LRK53_RS15605 -0.4 -1.3 MGMT family protein compare
LRK53_RS19020 -0.4 -1.5 hypothetical protein compare
LRK53_RS14800 -0.4 -2.3 DUF1631 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; biofilm sample experiments