Experiment set2IT093 for Pseudomonas simiae WCS417

Compare to:

D-Trehalose dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_00065 +1.3 2.6 3-methyladenine DNA glycosylase compare
PS417_15770 +1.2 2.1 pyridoxine 5'-phosphate oxidase compare
PS417_08620 +1.1 1.4 hypothetical protein compare
PS417_16720 +1.1 1.8 membrane protein compare
PS417_27800 +1.0 5.2 exodeoxyribonuclease III compare
PS417_14590 +1.0 2.6 LysR family transcriptional regulator compare
PS417_08545 +1.0 2.1 aromatic ring-opening dioxygenase LigB compare
PS417_19825 +0.9 8.2 ATPase AAA compare
PS417_08365 +0.9 1.5 hypothetical protein compare
PS417_16370 +0.9 5.8 chemotaxis protein CheY compare
PS417_10720 +0.9 3.2 chemotaxis protein CheY compare
PS417_06735 +0.9 2.5 3-oxoadipate enol-lactonase compare
PS417_22115 +0.8 2.1 transcriptional regulator compare
PS417_14245 +0.8 1.7 hypothetical protein compare
PS417_05235 +0.8 2.1 peptidase inhibitor I42 compare
PS417_19720 +0.8 1.5 DNA-binding protein compare
PS417_13725 +0.8 3.8 membrane protein compare
PS417_19755 +0.7 1.5 flagellar motor switch protein FliM compare
PS417_06745 +0.7 2.4 polysaccharide deacetylase compare
PS417_10985 +0.7 1.0 NADH:flavin oxidoreductase compare
PS417_05535 +0.7 1.2 Fis family transcriptional regulator compare
PS417_21255 +0.7 2.5 hypothetical protein compare
PS417_19560 +0.7 4.6 amino acid ABC transporter substrate-binding protein compare
PS417_17350 +0.7 2.8 copper resistance protein CopD compare
PS417_12445 +0.7 3.7 6-phosphogluconate dehydrogenase compare
PS417_06970 +0.7 1.7 LysR family transcriptional regulator compare
PS417_10275 +0.7 1.2 histidine kinase compare
PS417_11670 +0.7 2.1 multidrug transporter MATE compare
PS417_21025 +0.7 3.0 PEP synthetase regulatory protein compare
PS417_04960 +0.7 1.4 hypothetical protein compare
PS417_24785 +0.6 1.5 nucleoside-diphosphate sugar epimerase compare
PS417_28265 +0.6 2.6 pyridoxamine kinase compare
PS417_18055 +0.6 1.3 general secretion pathway protein GspK compare
PS417_02560 +0.6 1.9 23S rRNA methyltransferase compare
PS417_08590 +0.6 1.3 hypothetical protein compare
PS417_08745 +0.6 2.4 hypothetical protein compare
PS417_05865 +0.6 2.0 hypothetical protein compare
PS417_27245 +0.6 2.9 aminotransferase DegT compare
PS417_24895 +0.6 1.3 hypothetical protein compare
PS417_12390 +0.6 1.6 hypothetical protein compare
PS417_07985 +0.6 1.2 AbrB family transcriptional regulator compare
PS417_07895 +0.6 1.9 hypothetical protein compare
PS417_18265 +0.6 1.1 AsnC family transcriptional regulator compare
PS417_08730 +0.6 0.8 cytochrome C compare
PS417_28230 +0.6 1.7 transcriptional regulator compare
PS417_15650 +0.6 1.4 glutamine amidotransferase compare
PS417_23510 +0.6 2.5 HopJ type III effector protein compare
PS417_07700 +0.6 1.8 chromosome partitioning protein ParA compare
PS417_01405 +0.6 1.9 sugar transporter compare
PS417_11825 +0.5 1.2 transcriptional regulator compare
PS417_02385 +0.5 1.0 esterase compare
PS417_24580 +0.5 2.4 pseudouridine synthase compare
PS417_21585 +0.5 3.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_02070 +0.5 0.9 membrane protein compare
PS417_22810 +0.5 1.7 DNA base-flipping protein YbaZ compare
PS417_01945 +0.5 1.5 nuclease compare
PS417_05550 +0.5 2.4 amino acid ABC transporter permease compare
PS417_10665 +0.5 1.7 hypothetical protein compare
PS417_26605 +0.5 0.9 malonate decarboxylase subunit beta compare
PS417_03630 +0.5 2.6 hypothetical protein compare
PS417_17440 +0.5 1.4 beta-lactamase compare
PS417_25155 +0.5 0.9 hypothetical protein compare
PS417_26295 +0.5 2.0 gamma-butyrobetaine dioxygenase compare
PS417_17835 +0.5 1.8 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_17470 +0.5 1.1 LuxR family transcriptional regulator compare
PS417_18475 +0.5 1.3 Pyrrolidone-carboxylate peptidase compare
PS417_26530 +0.5 0.9 hypothetical protein compare
PS417_16510 +0.5 1.4 Clp protease ClpX compare
PS417_14280 +0.5 1.7 hypothetical protein compare
PS417_17420 +0.5 2.2 ethanol oxidation regulatory protein ercA (from data) compare
PS417_07770 +0.5 1.3 hypothetical protein compare
PS417_12015 +0.5 1.5 phosphoglycerate mutase compare
PS417_18060 +0.5 1.7 general secretion pathway protein GspJ compare
PS417_11805 +0.5 3.1 D-threo-aldose 1-dehydrogenase compare
PS417_19885 +0.5 0.9 flagellar basal body rod protein FlgG compare
PS417_12975 +0.5 2.6 GCN5 family acetyltransferase compare
PS417_14175 +0.5 1.6 ArsC family transcriptional regulator compare
PS417_06245 +0.5 1.5 zinc metallopeptidase RseP compare
PS417_14065 +0.5 2.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_11340 +0.5 1.8 prevent-host-death protein compare
PS417_19285 +0.5 1.1 ankyrin compare
PS417_10025 +0.5 0.8 bacteriophage lambda NinG family protein compare
PS417_15495 +0.5 2.5 FAD-dependent oxidoreductase compare
PS417_01130 +0.5 1.7 L-glyceraldehyde 3-phosphate reductase compare
PS417_27485 +0.5 2.5 hypothetical protein compare
PS417_01685 +0.5 1.6 membrane protein compare
PS417_13100 +0.5 1.9 ABC transporter ATP-binding protein compare
PS417_19765 +0.5 3.3 flagellar hook-length control protein compare
PS417_21865 +0.5 1.5 hypothetical protein compare
PS417_21015 +0.5 1.2 EstX protein compare
PS417_00960 +0.5 1.0 transcriptional regulator compare
PS417_14755 +0.5 1.2 UV damage repair endonuclease UvdE compare
PS417_06540 +0.5 0.7 membrane protein compare
PS417_27215 +0.4 2.1 hypothetical protein compare
PS417_09445 +0.4 1.8 antibiotic biosynthesis monooxygenase compare
PS417_17780 +0.4 0.8 Ais protein compare
PS417_02695 +0.4 1.1 protein hupE compare
PS417_04500 +0.4 0.9 hypothetical protein compare
PS417_16055 +0.4 1.7 biopolymer transporter TolR compare
PS417_07210 +0.4 2.6 allantoate amidohydrolase compare
PS417_08425 +0.4 2.6 acetyltransferase compare
PS417_07860 +0.4 2.0 hypothetical protein compare
PS417_01875 +0.4 0.8 polyhydroxyalkanoic acid system protein compare
PS417_21565 +0.4 2.0 flagellar basal body rod protein FlgC compare
PS417_11830 +0.4 1.4 membrane protein compare
PS417_03670 +0.4 2.9 MerR family transcriptional regulator compare
PS417_13495 +0.4 2.3 nuclease compare
PS417_06985 +0.4 2.2 metal ABC transporter ATPase compare
PS417_06365 +0.4 2.3 RNA polymerase sigma factor compare
PS417_18965 +0.4 1.0 dienelactone hydrolase compare
PS417_09610 +0.4 2.0 beta-xylosidase compare
PS417_01645 +0.4 1.4 cupin compare
PS417_25705 +0.4 1.3 lipoate--protein ligase compare
PS417_03045 +0.4 0.7 hypothetical protein compare
PS417_10675 +0.4 0.6 TetR family transcriptional regulator compare
PS417_01420 +0.4 2.7 histidine kinase compare
PS417_26640 +0.4 1.2 hypothetical protein compare
PS417_26470 +0.4 1.2 cytochrome C compare
PS417_13090 +0.4 1.1 dienelactone hydrolase compare
PS417_26175 +0.4 0.7 sarcosine oxidase subunit gamma compare
PS417_03365 +0.4 2.0 transcriptional regulator compare
PS417_01590 +0.4 1.1 polysaccharide deacetylase compare
PS417_18705 +0.4 2.3 succinate dehydrogenase compare
PS417_15160 +0.4 0.9 hypothetical protein compare
PS417_24805 +0.4 2.8 Fis family transcriptional regulator compare
PS417_07575 +0.4 1.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_05545 +0.4 2.2 amino acid ABC transporter ATP-binding protein compare
PS417_14430 +0.4 2.1 AraC family transcriptional regulator compare
PS417_18495 +0.4 1.5 hypothetical protein compare
PS417_21270 +0.4 1.0 translation initiation factor 2 compare
PS417_09585 +0.4 1.9 acetyltransferase compare
PS417_18080 +0.4 1.6 general secretion pathway protein GspF compare
PS417_23105 +0.4 0.8 hypothetical protein compare
PS417_27935 +0.4 0.8 type VI secretion protein compare
PS417_08335 +0.4 0.6 hypothetical protein compare
PS417_01630 +0.4 0.9 hypothetical protein compare
PS417_14650 +0.4 1.5 chemotaxis protein compare
PS417_21840 +0.4 1.6 chemotaxis protein compare
PS417_26125 +0.4 1.3 glutathione S-transferase compare
PS417_25645 +0.4 1.7 peptidase M23 compare
PS417_11025 +0.4 2.0 sugar ABC transporter substrate-binding protein compare
PS417_05100 +0.4 0.7 RNA polymerase sigma factor compare
PS417_25905 +0.4 1.1 AsnC family transcriptional regulator compare
PS417_18130 +0.4 1.3 ABC transporter substrate-binding protein compare
PS417_19965 +0.4 2.8 histidine kinase compare
PS417_06995 +0.4 1.5 tRNA-Gly compare
PS417_10120 +0.4 2.3 hypothetical protein compare
PS417_12200 +0.4 1.9 microcin ABC transporter permease compare
PS417_27640 +0.4 0.9 TetR family transcriptional regulator compare
PS417_04065 +0.4 1.0 peptide ABC transporter substrate-binding protein compare
PS417_12725 +0.4 1.3 AraC family transcriptional regulator compare
PS417_13645 +0.4 1.2 ABC transporter compare
PS417_19740 +0.4 1.4 flagellar biosynthesis protein flip compare
PS417_18980 +0.4 1.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_22060 +0.4 0.7 hypothetical protein compare
PS417_05840 +0.4 1.1 LuxR family transcriptional regulator compare
PS417_05070 +0.4 2.5 serine/threonine protein kinase compare
PS417_25310 +0.4 2.1 hypothetical protein compare
PS417_28225 +0.4 0.8 hypothetical protein compare
PS417_04535 +0.4 1.3 lysine transporter LysE compare
PS417_02760 +0.4 1.4 AraC family transcriptional regulator compare
PS417_14070 +0.4 0.9 hypothetical protein compare
PS417_21785 +0.4 1.9 ABC transporter permease compare
PS417_26840 +0.4 2.1 TetR family transcriptional regulator compare
PS417_15020 +0.4 2.4 2-hydroxyacid dehydrogenase compare
PS417_10820 +0.4 2.1 N-methylproline demethylase compare
PS417_13675 +0.4 1.9 endoribonuclease L-PSP compare
PS417_26750 +0.4 1.8 homoserine acetyltransferase compare
PS417_15425 +0.4 1.4 acetyltransferase compare
PS417_03970 +0.4 0.7 1-phosphofructokinase compare
PS417_08275 +0.4 2.3 ethanolamin permease compare
PS417_19725 +0.4 2.0 flagellar biosynthesis protein FlhB compare
PS417_04715 +0.4 1.9 Fe-S oxidoreductase compare
PS417_02280 +0.4 1.2 GlcNAc-PI de-N-acetylase compare
PS417_15745 +0.4 1.0 lipid carrier protein compare
PS417_15820 +0.4 1.0 universal stress protein UspA compare
PS417_02680 +0.4 1.3 hypothetical protein compare
PS417_20825 +0.4 0.6 drug:proton antiporter compare
PS417_24675 +0.4 1.1 lipoyl synthase compare
PS417_16275 +0.4 1.0 hypothetical protein compare
PS417_17035 +0.4 0.7 Cro/Cl family transcriptional regulator compare
PS417_18905 +0.4 1.3 acyl-CoA dehydrogenase compare
PS417_11000 +0.4 1.5 L-arabonate dehydratase (EC 4.2.1.25) (from data) compare
PS417_11550 +0.4 2.4 FAD-binding oxidoreductase compare
PS417_16975 +0.4 2.0 GNAT family acetyltransferase compare
PS417_24605 +0.3 1.1 thiamine-phosphate pyrophosphorylase compare
PS417_20170 +0.3 1.3 hypothetical protein compare
PS417_02885 +0.3 1.5 hypothetical protein compare
PS417_14400 +0.3 0.8 hypothetical protein compare
PS417_15695 +0.3 1.8 molybdenum cofactor biosynthesis protein A compare
PS417_13855 +0.3 0.6 acetyl-CoA acetyltransferase compare
PS417_24430 +0.3 0.8 3-dehydroquinate dehydratase compare
PS417_05250 +0.3 1.3 hypothetical protein compare
PS417_12650 +0.3 1.3 magnesium transporter compare
PS417_23530 +0.3 1.8 1,2-oxophytodienoate reductase compare
PS417_16115 +0.3 1.4 transcriptional regulator compare
PS417_10860 +0.3 0.8 flagellar basal body rod protein FlgG compare
PS417_13085 +0.3 1.1 FMN-dependent NADH-azoreductase compare
PS417_18270 +0.3 2.2 alcohol dehydrogenase compare
PS417_01310 +0.3 1.3 ATPase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas simiae WCS417

For carbon source D-Trehalose dihydrate across organisms