Experiment set2IT085 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

D-Trehalose dihydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Echvi_4595 +1.7 4.5 hypothetical protein compare
Echvi_3292 +1.4 2.9 hypothetical protein compare
Echvi_3853 +1.4 1.5 Predicted transcriptional regulators compare
Echvi_3142 +1.3 3.0 hypothetical protein compare
Echvi_0128 +1.2 2.7 hypothetical protein compare
Echvi_4081 +1.1 2.9 Malic enzyme compare
Echvi_0096 +1.1 2.0 Predicted pyrophosphatase compare
Echvi_1227 +1.1 1.6 hypothetical protein compare
Echvi_4375 +1.0 1.7 hypothetical protein compare
Echvi_1045 +1.0 6.6 Transcriptional regulator compare
Echvi_2193 +1.0 7.4 Transcriptional regulators compare
Echvi_1603 +1.0 3.0 hypothetical protein compare
Echvi_1662 +0.9 2.9 hypothetical protein compare
Echvi_3918 +0.9 1.4 Histone H1-like protein Hc1. compare
Echvi_0650 +0.9 2.2 thioredoxin compare
Echvi_1015 +0.8 2.1 Retron-type reverse transcriptase compare
Echvi_0025 +0.8 1.3 DNA repair proteins compare
Echvi_1547 +0.8 3.4 hypothetical protein compare
Echvi_1020 +0.8 1.6 hypothetical protein compare
Echvi_4025 +0.8 1.6 hypothetical protein compare
Echvi_3872 +0.8 1.4 SnoaL-like polyketide cyclase. compare
Echvi_2238 +0.8 2.2 hypothetical protein compare
Echvi_2761 +0.8 2.0 hypothetical protein compare
Echvi_1224 +0.8 5.9 gliding motility-associated lipoprotein GldD compare
Echvi_0599 +0.8 3.2 hypothetical protein compare
Echvi_4561 +0.7 2.1 hypothetical protein compare
Echvi_1280 +0.7 2.0 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_0623 +0.7 6.6 gliding motility-associated lipoprotein GldK compare
Echvi_0674 +0.7 6.4 hypothetical protein compare
Echvi_0621 +0.7 6.6 gliding motility-associated protein GldM compare
Echvi_1821 +0.7 5.5 hypothetical protein compare
Echvi_0299 +0.7 6.0 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_2258 +0.7 1.4 hypothetical protein compare
Echvi_3922 +0.7 2.4 hypothetical protein compare
Echvi_0622 +0.7 4.8 gliding motility-associated protein GldL compare
Echvi_0169 +0.7 6.0 hypothetical protein compare
Echvi_3910 +0.7 4.8 Transcriptional regulator/sugar kinase compare
Echvi_0144 +0.7 1.1 TIGR00159 family protein compare
Echvi_4365 +0.7 1.1 hypothetical protein compare
Echvi_3126 +0.7 4.2 Fe2+-dicitrate sensor, membrane component compare
Echvi_1646 +0.7 3.0 hypothetical protein compare
Echvi_1264 +0.7 1.3 hypothetical protein compare
Echvi_4536 +0.7 4.1 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) compare
Echvi_0655 +0.7 4.7 hypothetical protein compare
Echvi_3057 +0.7 1.4 citrate synthase I (hexameric type) compare
Echvi_4083 +0.7 6.3 hypothetical protein compare
Echvi_0620 +0.6 5.4 gliding motility associated protien GldN compare
Echvi_2217 +0.6 1.3 hypothetical protein compare
Echvi_0300 +0.6 4.5 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
Echvi_2266 +0.6 5.2 Alanine dehydrogenase compare
Echvi_0219 +0.6 2.9 hypothetical protein compare
Echvi_0626 +0.6 4.0 hypothetical protein compare
Echvi_1563 +0.6 1.3 Uncharacterized homolog of Blt101 compare
Echvi_2365 +0.6 2.1 Response regulator containing a CheY-like receiver domain and an HD-GYP domain compare
Echvi_3835 +0.6 1.8 hypothetical protein compare
Echvi_1838 +0.6 0.9 hypothetical protein compare
Echvi_3401 +0.6 1.7 hypothetical protein compare
Echvi_4051 +0.6 0.8 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) compare
Echvi_0035 +0.6 3.6 Domain of Unknown Function (DUF349). compare
Echvi_3960 +0.6 1.4 Histone H1-like protein Hc1. compare
Echvi_1638 +0.6 1.3 hypothetical protein compare
Echvi_1237 +0.6 2.3 Thiol-disulfide isomerase and thioredoxins compare
Echvi_1398 +0.6 2.0 hypothetical protein compare
Echvi_1747 +0.6 2.4 amino acid carrier protein compare
Echvi_4073 +0.6 1.8 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) compare
Echvi_1765 +0.6 1.1 Cell wall-associated hydrolases (invasion-associated proteins) compare
Echvi_1311 +0.6 4.9 gliding motility-associated lipoprotein GldJ compare
Echvi_1736 +0.6 1.7 hypothetical protein compare
Echvi_2824 +0.6 4.7 hypothetical protein compare
Echvi_3546 +0.6 1.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Echvi_0582 +0.6 1.9 hypothetical protein compare
Echvi_3914 +0.6 4.9 Transcriptional regulators compare
Echvi_4068 +0.6 2.0 isocitrate dehydrogenase compare
Echvi_2829 +0.5 5.2 hypothetical protein compare
Echvi_3262 +0.5 0.9 hypothetical protein compare
Echvi_1342 +0.5 1.2 Predicted endonuclease containing a URI domain compare
Echvi_4022 +0.5 1.4 hypothetical protein compare
Echvi_0733 +0.5 4.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_3723 +0.5 1.6 hypothetical protein compare
Echvi_1319 +0.5 4.7 gliding motility-associated lipoprotein GldB compare
Echvi_0298 +0.5 4.7 gliding-associated putative ABC transporter substrate-binding component GldG compare
Echvi_0527 +0.5 2.9 Predicted endonuclease containing a URI domain compare
Echvi_3805 +0.5 1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Echvi_3320 +0.5 2.7 GIY-YIG catalytic domain. compare
Echvi_3120 +0.5 2.5 hypothetical protein compare
Echvi_4369 +0.5 0.8 hypothetical protein compare
Echvi_3381 +0.5 4.8 Pregnancy-associated plasma protein-A. compare
Echvi_2936 +0.5 2.1 Predicted transcriptional regulator compare
Echvi_4140 +0.5 2.7 Copper chaperone compare
Echvi_4366 +0.5 1.4 hypothetical protein compare
Echvi_1616 +0.5 2.3 hypothetical protein compare
Echvi_2939 +0.5 2.7 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Echvi_4411 +0.5 3.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_2779 +0.5 1.2 hypothetical protein compare
Echvi_0006 +0.5 2.0 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Echvi_0591 +0.5 0.7 Molecular chaperone GrpE (heat shock protein) compare
Echvi_2084 +0.5 4.3 Uncharacterized protein conserved in bacteria compare
Echvi_2709 +0.5 1.6 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_2947 +0.5 2.2 hypothetical protein compare
Echvi_1124 +0.5 1.7 Uncharacterized conserved protein compare
Echvi_4594 +0.5 3.1 Xaa-Pro aminopeptidase compare
Echvi_2246 +0.5 1.0 hypothetical protein compare
Echvi_0543 +0.5 2.4 hypothetical protein compare
Echvi_4573 +0.5 4.0 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_3111 +0.5 3.4 ABC-type Fe3+-siderophore transport system, permease component compare
Echvi_4364 +0.5 1.1 hypothetical protein compare
Echvi_0624 +0.5 3.8 Bacteroidetes-specific putative membrane protein compare
Echvi_3924 +0.5 2.6 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_2350 +0.5 2.3 dinuclear metal center protein, YbgI/SA1388 family compare
Echvi_0652 +0.5 2.5 Outer membrane protein compare
Echvi_2683 +0.5 1.4 hypothetical protein compare
Echvi_3600 +0.5 3.5 Superfamily II DNA and RNA helicases compare
Echvi_1829 +0.5 2.8 Protein-tyrosine-phosphatase compare
Echvi_3717 +0.5 3.8 Outer membrane protein/protective antigen OMA87 compare
Echvi_1054 +0.5 1.5 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit compare
Echvi_2554 +0.5 1.2 hypothetical protein compare
Echvi_1265 +0.5 2.1 hypothetical protein compare
Echvi_0660 +0.5 1.9 Uncharacterized conserved protein compare
Echvi_1201 +0.5 1.9 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Echvi_3983 +0.4 2.5 Transcriptional regulator/sugar kinase compare
Echvi_2520 +0.4 2.5 Predicted unusual protein kinase compare
Echvi_2793 +0.4 4.2 hypothetical protein compare
Echvi_2233 +0.4 2.1 pyridoxal phosphate enzyme, YggS family compare
Echvi_3622 +0.4 1.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Echvi_0431 +0.4 1.5 hypothetical protein compare
Echvi_2423 +0.4 2.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Echvi_2201 +0.4 1.0 hypothetical protein compare
Echvi_0965 +0.4 1.0 GAF domain-containing protein compare
Echvi_0662 +0.4 1.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Echvi_0584 +0.4 2.7 peptide chain release factor 3 compare
Echvi_0482 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
Echvi_3456 +0.4 1.1 Uncharacterized protein conserved in bacteria compare
Echvi_0617 +0.4 3.8 hypothetical protein compare
Echvi_1022 +0.4 2.5 ABC-type spermidine/putrescine transport systems, ATPase components compare
Echvi_0776 +0.4 3.1 Sterol desaturase compare
Echvi_1538 +0.4 3.1 hypothetical protein compare
Echvi_0837 +0.4 1.8 RNA polymerase sigma factor, sigma-70 family compare
Echvi_0004 +0.4 1.4 hypothetical protein compare
Echvi_3300 +0.4 2.1 hypothetical protein compare
Echvi_4483 +0.4 1.6 Copper chaperone compare
Echvi_4237 +0.4 1.3 Predicted glycosyltransferases compare
Echvi_3925 +0.4 2.5 methionine-S-sulfoxide reductase compare
Echvi_1327 +0.4 1.9 endoribonuclease L-PSP, putative compare
Echvi_0796 +0.4 0.5 hypothetical protein compare
Echvi_0215 +0.4 1.4 phosphomethylpyrimidine kinase compare
Echvi_4342 +0.4 3.7 transporter, SSS family compare
Echvi_3911 +0.4 3.5 alpha-1,2-mannosidase, putative compare
Echvi_0515 +0.4 2.1 Ribulokinase (EC 2.7.1.16) (from data) compare
Echvi_4558 +0.4 2.2 putative phosphonate catabolism associated alcohol dehydrogenase compare
Echvi_0186 +0.4 0.8 Predicted metal-binding, possibly nucleic acid-binding protein compare
Echvi_3860 +0.4 1.2 hypothetical protein compare
Echvi_2655 +0.4 2.0 RNA polymerase sigma factor, sigma-70 family compare
Echvi_4535 +0.4 2.2 hypothetical protein compare
Echvi_3701 +0.4 1.7 hypothetical protein compare
Echvi_3030 +0.4 2.3 methionine aminopeptidase, type I compare
Echvi_2736 +0.4 2.8 Glycosyltransferases involved in cell wall biogenesis compare
Echvi_1078 +0.4 1.0 Protein-L-isoaspartate carboxylmethyltransferase compare
Echvi_1136 +0.4 1.3 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases compare
Echvi_0511 +0.4 1.9 Superfamily II DNA and RNA helicases compare
Echvi_0119 +0.4 2.6 Proline dehydrogenase (EC 1.5.5.2) (from data) compare
Echvi_3934 +0.4 0.7 hypothetical protein compare
Echvi_1865 +0.4 0.6 hypothetical protein compare
Echvi_4319 +0.4 1.9 hypothetical protein compare
Echvi_1068 +0.4 2.1 Transcriptional regulators compare
Echvi_4618 +0.4 2.0 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Echvi_2302 +0.4 1.2 hypothetical protein compare
Echvi_4047 +0.4 0.9 hypothetical protein compare
Echvi_2812 +0.4 1.8 hypothetical protein compare
Echvi_3295 +0.4 2.7 Outer membrane protein compare
Echvi_2804 +0.4 2.3 Fructokinase (EC 2.7.1.4) (from data) compare
Echvi_0199 +0.4 2.9 hypothetical protein compare
Echvi_2735 +0.4 1.2 hypothetical protein compare
Echvi_1413 +0.4 1.7 Transposase. compare
Echvi_2373 +0.4 1.5 hypothetical protein compare
Echvi_2139 +0.4 1.9 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0915 +0.4 2.1 hypothetical protein compare
Echvi_2199 +0.4 0.7 hypothetical protein compare
Echvi_0378 +0.4 1.2 hypothetical protein compare
Echvi_3179 +0.4 2.0 Bacteroides conjugative transposon TraK protein compare
Echvi_4020 +0.4 1.6 hypothetical protein compare
Echvi_3252 +0.4 1.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_2322 +0.4 1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Echvi_0851 +0.4 1.2 Uncharacterized conserved protein compare
Echvi_0510 +0.4 2.3 Transcriptional regulators compare
Echvi_1277 +0.4 1.4 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Echvi_3950 +0.4 2.5 Glycine/D-amino acid oxidases (deaminating) compare
Echvi_3350 +0.4 1.8 Predicted SAM-dependent methyltransferases compare
Echvi_1495 +0.4 1.8 hypothetical protein compare
Echvi_3584 +0.4 1.9 hypothetical protein compare
Echvi_2953 +0.4 0.9 Uncharacterized conserved protein compare
Echvi_2226 +0.4 1.4 hypothetical protein compare
Echvi_3923 +0.4 2.5 Fe2+-dicitrate sensor, membrane component compare
Echvi_2823 +0.4 2.5 Predicted Zn-dependent peptidases compare
Echvi_3113 +0.4 1.7 Putative heme degradation protein compare
Echvi_0089 +0.4 1.2 methylmalonyl-CoA epimerase compare
Echvi_3515 +0.4 1.6 Bacterial mobilisation protein (MobC). compare
Echvi_1816 +0.4 1.7 Cytidine deaminase compare
Echvi_0010 +0.4 2.2 hypothetical protein compare
Echvi_0757 +0.4 0.9 hypothetical protein compare
Echvi_3362 +0.4 2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Trehalose dihydrate in Echinicola vietnamensis KMM 6221, DSM 17526

For carbon source D-Trehalose dihydrate across organisms