Experiment set2IT068 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.2 -4.2 3-isopropylmalate dehydratase compare
AO356_14440 -6.1 -4.2 indole-3-glycerol-phosphate synthase compare
AO356_06970 -5.6 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_14435 -5.3 -5.2 anthranilate phosphoribosyltransferase compare
AO356_08635 -5.3 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
AO356_22200 -5.1 -7.0 sirohydrochlorin ferrochelatase compare
AO356_13405 -5.1 -9.8 methionine biosynthesis protein MetW compare
AO356_09815 -5.1 -6.0 imidazoleglycerol-phosphate dehydratase compare
AO356_21440 -5.0 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_13410 -5.0 -10.1 homoserine O-acetyltransferase compare
AO356_21415 -4.9 -10.9 3-isopropylmalate dehydrogenase compare
AO356_18275 -4.9 -11.8 ornithine carbamoyltransferase compare
AO356_14420 -4.8 -12.9 anthranilate synthase compare
AO356_19090 -4.8 -3.3 phosphoribosylaminoimidazole synthetase compare
AO356_09800 -4.7 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_06960 -4.7 -7.2 histidinol-phosphate aminotransferase compare
AO356_09810 -4.7 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
AO356_10300 -4.6 -6.4 3-phosphoglycerate dehydrogenase compare
AO356_18325 -4.6 -12.8 argininosuccinate synthase compare
AO356_10915 -4.6 -10.6 tryptophan synthase subunit beta compare
AO356_13250 -4.5 -9.2 dihydroxy-acid dehydratase compare
AO356_06965 -4.5 -8.6 histidinol dehydrogenase compare
AO356_21465 -4.5 -4.3 amidophosphoribosyltransferase compare
AO356_13085 -4.4 -10.3 N-acetylglutamate synthase compare
AO356_10340 -4.4 -12.8 phosphoserine phosphatase compare
AO356_12525 -4.4 -10.3 acetylglutamate kinase compare
AO356_08735 -4.3 -12.9 phosphoserine phosphatase compare
AO356_16170 -4.3 -9.5 acetolactate synthase 3 catalytic subunit compare
AO356_00555 -4.3 -11.6 sulfite reductase compare
AO356_16175 -4.3 -8.2 acetolactate synthase 3 regulatory subunit compare
AO356_12520 -4.2 -2.9 orotate phosphoribosyltransferase compare
AO356_09375 -4.2 -21.3 glutamate synthase compare
AO356_15260 -4.2 -2.3 dehydratase compare
AO356_09370 -4.2 -12.2 glutamate synthase compare
AO356_14430 -4.2 -8.9 anthranilate synthase compare
AO356_16180 -4.2 -14.9 ketol-acid reductoisomerase compare
AO356_14295 -4.1 -2.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_21400 -4.1 -7.0 isopropylmalate isomerase compare
AO356_09520 -4.1 -5.6 phosphoribosyl-AMP cyclohydrolase compare
AO356_10910 -4.0 -9.9 tryptophan synthase subunit alpha compare
AO356_12780 -4.0 -8.1 argininosuccinate lyase compare
AO356_09525 -4.0 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_13605 -3.8 -8.2 5,10-methylenetetrahydrofolate reductase compare
AO356_02265 -3.8 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_21470 -3.8 -8.1 O-succinylhomoserine sulfhydrylase compare
AO356_19795 -3.8 -2.6 glycerol-3-phosphate dehydrogenase compare
AO356_18980 -3.5 -11.7 sodium:C4-dicarboxylate symporter (dctA) (from data) conserved
AO356_06550 -3.5 -9.9 2-isopropylmalate synthase compare
AO356_18025 -3.2 -3.8 ATP-dependent DNA helicase RuvB compare
AO356_20830 -3.2 -4.8 phosphoadenosine phosphosulfate reductase compare
AO356_18730 -3.2 -10.0 arginine N-succinyltransferase compare
AO356_16600 -3.1 -3.0 malate:quinone oxidoreductase compare
AO356_17520 -3.1 -2.1 phosphoribosylformylglycinamidine synthase compare
AO356_19085 -2.9 -8.3 phosphoribosylglycinamide formyltransferase compare
AO356_20155 -2.9 -6.9 phosphate acyltransferase compare
AO356_19050 -2.9 -3.4 cysteine synthase compare
AO356_00560 -2.9 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_27215 -2.8 -3.3 hypothetical protein compare
AO356_10065 -2.8 -7.4 Fis family transcriptional regulator conserved
AO356_11315 -2.8 -1.9 shikimate dehydrogenase compare
AO356_21330 -2.7 -8.4 aromatic amino acid aminotransferase compare
AO356_16075 -2.7 -5.2 Fis family transcriptional regulator compare
AO356_20175 -2.6 -2.5 3-oxoacyl-ACP synthase compare
AO356_27180 -2.6 -5.8 hypothetical protein compare
AO356_27210 -2.5 -9.1 hypothetical protein compare
AO356_09425 -2.3 -8.3 malate dehydrogenase compare
AO356_13685 -2.3 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_18020 -2.3 -4.2 ATP-dependent DNA helicase RuvA compare
AO356_07480 -2.3 -3.0 carbamoyl phosphate synthase large subunit compare
AO356_09795 -2.2 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
AO356_16670 -2.2 -10.3 adenylylsulfate kinase compare
AO356_10140 -2.2 -7.3 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_05670 -2.2 -3.6 recombinase RecA compare
AO356_01750 -2.2 -4.3 ATP-dependent Clp protease proteolytic subunit compare
AO356_17070 -2.1 -2.8 cytochrome B compare
AO356_16665 -2.1 -11.4 sulfate adenylyltransferase compare
AO356_11340 -2.1 -2.0 NADH-flavin reductase compare
AO356_09730 -2.0 -6.0 nitrogen regulation protein NR(I) compare
AO356_21410 -2.0 -4.0 SAM-dependent methyltransferase compare
AO356_04560 -2.0 -3.0 serine peptidase compare
AO356_26455 -2.0 -1.9 hypothetical protein compare
AO356_01745 -2.0 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_19045 -1.8 -8.1 chemotaxis protein CheY compare
AO356_15815 -1.8 -1.5 gamma-glutamyl kinase compare
AO356_17035 -1.8 -5.6 ATPase compare
AO356_12380 -1.7 -6.7 ATP-dependent DNA helicase RecG compare
AO356_00355 -1.7 -7.6 chemotaxis protein CheY compare
AO356_08875 -1.7 -2.9 toluene tolerance protein compare
AO356_02310 -1.7 -3.6 PasA protein compare
AO356_11025 -1.7 -5.3 transcriptional regulator PhoU compare
AO356_17890 -1.7 -2.5 H-NS histone compare
AO356_23645 -1.7 -2.4 hypothetical protein compare
AO356_08275 -1.6 -3.3 precorrin isomerase compare
AO356_03180 -1.6 -2.9 CysB family transcriptional regulator compare
AO356_18735 -1.6 -4.4 arginine N-succinyltransferase compare
AO356_10330 -1.6 -10.5 threonine dehydratase compare
AO356_08235 -1.6 -6.1 histidine kinase compare
AO356_12725 -1.6 -4.1 recombinase XerC compare
AO356_09725 -1.5 -4.6 histidine kinase compare
AO356_07495 -1.5 -3.5 molecular chaperone DnaJ compare
AO356_05630 -1.5 -2.8 LysR family transcriptional regulator compare
AO356_28300 -1.5 -1.9 hypothetical protein compare
AO356_17950 -1.4 -6.9 histidine kinase compare
AO356_02465 -1.4 -2.2 carbonate dehydratase compare
AO356_14135 -1.4 -9.6 biotin synthase compare
AO356_15165 -1.4 -2.3 protein cII compare
AO356_23980 -1.4 -1.9 HIT family hydrolase compare
AO356_07005 -1.4 -2.2 ABC transporter ATP-binding protein compare
AO356_10920 -1.4 -6.5 LysR family transcriptional regulator compare
AO356_27205 -1.4 -6.2 hypothetical protein compare
AO356_19425 -1.4 -2.2 lipid A biosynthesis lauroyl acyltransferase compare
AO356_03500 -1.3 -2.7 3-oxoacyl-ACP reductase compare
AO356_07910 -1.3 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_08905 -1.3 -2.9 glycosyl transferase compare
AO356_19135 -1.3 -3.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_26395 -1.3 -1.5 hypothetical protein compare
AO356_28255 -1.3 -2.5 class III aminotransferase compare
AO356_26655 -1.2 -2.5 (2Fe-2S)-binding protein compare
AO356_19150 -1.2 -4.0 cobalamin biosynthesis protein CobD compare
AO356_02315 -1.2 -2.3 DNA topoisomerase I compare
AO356_27250 -1.2 -3.4 hypothetical protein compare
AO356_06385 -1.2 -3.0 recombinase XerD compare
AO356_08265 -1.2 -3.8 precorrin-3B C17-methyltransferase compare
AO356_19160 -1.2 -5.1 cobyric acid synthase compare
AO356_16870 -1.1 -6.3 benzoate transporter compare
AO356_17735 -1.1 -5.1 XRE family transcriptional regulator conserved
AO356_01740 -1.1 -2.3 DNA-binding protein compare
AO356_08270 -1.1 -6.3 precorrin-2 C20-methyltransferase compare
AO356_19165 -1.1 -2.9 adenosylcobinamide kinase compare
AO356_00530 -1.1 -3.1 precorrin-4 C11-methyltransferase compare
AO356_07090 -1.1 -2.6 hypothetical protein compare
AO356_06690 -1.1 -2.6 queuine tRNA-ribosyltransferase compare
AO356_12475 -1.1 -5.5 reactive intermediate/imine deaminase compare
AO356_21790 -1.1 -1.8 sulfonate ABC transporter ATP-binding protein compare
AO356_21125 -1.1 -3.2 cyclic peptide transporter compare
AO356_18065 -1.1 -2.4 7-carboxy-7-deazaguanine synthase compare
AO356_03800 -1.1 -1.9 histidine kinase compare
AO356_12990 -1.1 -4.8 5-formyltetrahydrofolate cyclo-ligase compare
AO356_26005 -1.1 -1.3 hypothetical protein compare
AO356_07390 -1.1 -1.5 polyribonucleotide nucleotidyltransferase compare
AO356_19170 -1.0 -3.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_19175 -1.0 -3.2 alpha-ribazole phosphatase compare
AO356_10185 -1.0 -5.2 glutamate--cysteine ligase compare
AO356_07000 -1.0 -1.9 ABC transporter permease compare
AO356_14790 -1.0 -5.3 MFS transporter compare
AO356_18000 -1.0 -1.2 FmdB family transcriptional regulator compare
AO356_17985 -1.0 -4.1 cold-shock protein compare
AO356_24550 -1.0 -1.2 hypothetical protein compare
AO356_04460 -1.0 -1.9 sugar translocase compare
AO356_02190 -1.0 -4.3 hypothetical protein compare
AO356_07915 -1.0 -2.3 exodeoxyribonuclease V subunit beta compare
AO356_17075 -1.0 -1.9 cytochrome C compare
AO356_01015 -1.0 -1.7 peptidylprolyl isomerase compare
AO356_08645 -1.0 -3.3 hypothetical protein compare
AO356_09540 -1.0 -1.3 twin-arginine protein translocation system subunit TatC compare
AO356_16435 -0.9 -1.4 hypothetical protein compare
AO356_14920 -0.9 -1.5 hypothetical protein compare
AO356_27230 -0.9 -3.1 hypothetical protein compare
AO356_08585 -0.9 -2.4 50S ribosomal protein L9 compare
AO356_10060 -0.9 -4.8 ATPase conserved
AO356_03070 -0.9 -5.4 histidine kinase compare
AO356_21460 -0.9 -1.7 colicin V production CvpA compare
AO356_08640 -0.9 -2.8 membrane protease HflC compare
AO356_27245 -0.9 -0.9 hypothetical protein compare
AO356_18330 -0.9 -4.0 hypothetical protein compare
AO356_22650 -0.9 -1.7 chemotaxis protein CheD compare
AO356_19935 -0.9 -1.3 pilus assembly protein PilA compare
AO356_02205 -0.9 -1.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_00605 -0.9 -2.5 TetR family transcriptional regulator compare
AO356_04205 -0.9 -2.4 hypothetical protein compare
AO356_05995 -0.9 -1.8 hypothetical protein compare
AO356_00545 -0.9 -5.2 methionine synthase compare
AO356_24245 -0.9 -2.3 siderophore-iron reductase FhuF compare
AO356_06360 -0.9 -2.4 hypothetical protein compare
AO356_10000 -0.8 -2.6 hypothetical protein compare
AO356_19155 -0.8 -4.5 threonine-phosphate decarboxylase compare
AO356_07750 -0.8 -2.7 plasmid stabilization protein compare
AO356_13505 -0.8 -1.7 chemotaxis protein compare
AO356_01875 -0.8 -1.0 Cro/Cl family transcriptional regulator compare
AO356_16060 -0.8 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_07020 -0.8 -1.1 LPS export ABC transporter periplasmic protein LptC compare
AO356_30215 -0.8 -2.5 (2Fe-2S)-binding protein compare
AO356_11055 -0.8 -2.5 long-chain acyl-CoA thioester hydrolase compare
AO356_19140 -0.8 -5.1 cobyrinic acid a,c-diamide synthase compare
AO356_21590 -0.8 -1.0 hypothetical protein compare
AO356_06995 -0.8 -2.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_07600 -0.8 -1.5 hypothetical protein compare
AO356_00920 -0.8 -1.6 cold-shock protein compare
AO356_05060 -0.8 -1.9 gluconokinase compare
AO356_00505 -0.8 -4.4 cobalamin biosynthesis protein CobN compare
AO356_13475 -0.8 -3.6 glutathione synthetase compare
AO356_22405 -0.8 -1.0 hypothetical protein compare
AO356_09490 -0.7 -2.2 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO356_06325 -0.7 -1.0 plasmid stabilization protein ParE compare
AO356_10625 -0.7 -1.7 peptide ABC transporter substrate-binding protein compare
AO356_14020 -0.7 -1.5 hypothetical protein compare
AO356_27395 -0.7 -1.9 chemotaxis protein CheY compare
AO356_22795 -0.7 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_16505 -0.7 -1.4 molybdopterin-synthase adenylyltransferase compare
AO356_20520 -0.7 -1.1 oxidoreductase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Malic acid disodium salt monohydrate across organisms