Experiment set2IT066 for Agrobacterium fabrum C58

Compare to:

Melibiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0486 -7.4 -5.1 dihydroorotate dehydrogenase compare
Atu2264 -7.4 -7.2 2-isopropylmalate synthase compare
Atu1307 -7.3 -7.1 dihydroorotase compare
Atu2709 -7.0 -16.9 3-isopropylmalate dehydratase, large subunit compare
Atu1844 -6.8 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu3706 -6.7 -6.6 D-3-phosphoglycerate dehydrogenase compare
Atu2036 -6.6 -13.4 acetolactate synthase III, large subunit compare
Atu1588 -6.5 -7.8 homoserine dehydrogenase compare
Atu0099 -6.5 -10.8 prephenate dehydratase compare
Atu2726 -6.4 -23.3 pyruvate carboxylase compare
Atu1687 -6.3 -10.4 anthranilate phosphoribosyltransferase compare
Atu3754 -6.2 -7.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2791 -6.1 -9.4 3-isopropylmalate dehydrogenase compare
Atu2289 -6.1 -19.3 anthranilate synthase component I and II compare
Atu3885 -5.9 -9.1 inositol monophosphatase compare
Atu0017 -5.9 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0432 -5.9 -10.7 O-succinylhomoserine sulfhydrylase compare
Atu0038 -5.9 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0876 -5.9 -4.0 superoxide dismutase compare
Atu1205 -5.9 -14.2 threonine dehydratase compare
Atu3755 -5.7 -5.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1750 -5.6 -6.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0298 -5.5 -8.3 orotidine 5 compare
Atu4663 -5.4 -11.2 oligopeptide ABC transporter permease compare
Atu0703 -5.4 -5.2 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu4665 -5.4 -11.9 alpha-galactosidase compare
Atu1308 -5.3 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu2650 -5.3 -15.3 glycerol-3-phosphate dehydrogenase compare
Atu0678 -5.3 -7.2 histidyl-tRNA synthetase compare
Atu2790 -5.2 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu1141 -5.2 -7.8 Phosphoribosylglycinamide synthetase compare
Atu2718 -5.2 -10.5 homoserine O-succinyltransferase compare
Atu2040 -5.1 -7.0 phosphoserine phosphatase compare
Atu0537 -5.1 -8.5 histidinol dehydrogenase compare
Atu0399 -5.0 -7.7 dihydroorotase compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu2747 -4.9 -14.8 hypothetical protein compare
Atu0039 -4.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu4661 -4.9 -20.2 alpha-galactoside ABC transporter substrate-binding protein compare
Atu0679 -4.8 -6.4 ATP phosphoribosyltransferase compare
Atu4660 -4.8 -16.4 alpha-galactosidase compare
Atu1075 -4.7 -9.0 amidophosphoribosyltransferase compare
Atu4662 -4.7 -8.5 oligopeptide ABC transporter permease compare
Atu1030 -4.7 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3483 -4.6 -7.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2015 -4.6 -17.3 aminotransferase compare
Atu3707 -4.6 -5.1 phosphoserine aminotransferase compare
Atu4664 -4.6 -15.7 oligopeptide ABC transporter ATPase compare
Atu1140 -4.6 -6.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0030 -4.5 -2.8 phosphocarrier protein HPr compare
Atu1850 -4.5 -6.8 phosphoribosylformylglycinamidine synthetase II compare
Atu4659 -4.4 -11.9 AraC family transcriptional regulator compare
Atu1688 -4.3 -7.0 indole-3-glycerol-phosphate synthase compare
Atu0647 -4.3 -8.2 phosphoribosylamine--glycine ligase compare
Atu3783 -4.2 -16.1 glutamate synthase subunit beta compare
Atu0043 -4.1 -4.0 imidazoleglycerol-phosphate dehydratase compare
Atu3482 -4.1 -14.2 pantoate--beta-alanine ligase compare
Atu3739 -4.0 -4.7 phosphoglycerate kinase compare
Atu3784 -3.9 -25.7 glutamate synthase large subunit compare
Atu0400 -3.9 -5.8 orotate phosphoribosyltransferase compare
Atu1845 -3.8 -6.4 phosphoribosylformylglycinamidine synthase I compare
Atu6098 -3.8 -1.6 transcriptional regulator, HTH family compare
Atu1463 -3.5 -6.2 glycine cleavage system component H compare
Atu3731 -3.5 -9.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu0503 -3.3 -17.4 enoyl-CoA hydratase compare
Atu1686 -3.3 -17.9 peptidyl-prolyl cis-trans isomerse D compare
Atu2554 -3.3 -4.4 lysyl-tRNA synthetase compare
Atu3219 -3.2 -16.0 dihydroxy-acid dehydratase compare
Atu0641 -3.1 -5.8 hypothetical protein compare
Atu1462 -3.1 -13.5 glycine cleavage system protein P2 compare
Atu1456 -3.1 -13.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2548 -3.1 -17.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0502 -3.0 -9.8 acetyl-CoA acetyltransferase compare
Atu0501 -3.0 -16.6 acyl-CoA dehydrogenase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2155 -2.9 -18.7 methionine synthase compare
Atu1464 -2.9 -5.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu0792 -2.9 -8.0 hypothetical protein compare
Atu0704 -2.8 -12.9 2-dehydro-3-deoxygalactonate kinase compare
Atu1589 -2.7 -8.9 aminotransferase, class I compare
Atu1454 -2.6 -9.1 siroheme synthase compare
Atu4096 -2.6 -9.5 nicotinate-nucleotide pyrophosphorylase compare
Atu4098 -2.5 -13.8 quinolinate synthetase compare
Atu2205 -2.4 -7.2 transcriptional regulator, MarR family compare
Atu1455 -2.4 -3.5 hypothetical protein compare
Atu1359 -2.2 -1.9 dnaK deletion suppressor protein compare
Atu0029 -2.2 -6.1 S-adenosylhomocysteine hydrolase compare
Atu1446 -2.1 -3.1 two component response regulator compare
Atu0705 -2.1 -10.9 3-oxoacyl-(acyl carrier protein) reductase compare
Atu3469 -2.0 -3.8 phosphoglyceromutase compare
Atu1113 -2.0 -8.1 dehydrogenase compare
Atu4097 -1.9 -11.2 L-aspartate oxidase compare
Atu1620 -1.8 -10.2 triosephosphate isomerase compare
Atu0322 -1.8 -6.2 enoyl CoA hydratase compare
Atu8115 -1.8 -4.6 Hypothetical Protein compare
Atu1604 -1.7 -13.2 poly-beta-hydroxybutyrate synthase compare
Atu0405 -1.7 -11.2 long-chain-fatty-acid-CoA-ligase compare
Atu1457 -1.6 -2.3 hypothetical protein compare
Atu3997 -1.6 -10.8 biotin synthetase compare
Atu1748 -1.6 -9.7 NIFU-like protein compare
Atu4000 -1.6 -11.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0188 -1.5 -4.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0184 -1.5 -3.1 glucokinase compare
Atu6114 -1.5 -2.2 hypothetical protein compare
Atu2209 -1.5 -3.9 pyrroline-5-carboxylate reductase compare
Atu0723 -1.4 -2.1 FAD dependent oxidoreductase compare
Atu3998 -1.4 -8.4 8-amino-7-oxononanoate synthase compare
Atu1354 -1.4 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3999 -1.4 -2.9 dithiobiotin synthetase compare
Atu3712 -1.3 -2.4 hypothetical protein compare
Atu4897 -1.3 -2.0 hypothetical protein compare
Atu1685 -1.3 -1.4 hypothetical protein compare
Atu1546 -1.3 -3.7 transcriptional regulator, MerR family compare
Atu2335 -1.3 -3.1 hypothetical protein compare
Atu0803 -1.2 -9.4 pyruvate,orthophosphate dikinase compare
Atu0346 -1.2 -1.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1774 -1.2 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu0536 -1.2 -5.4 hypothetical protein compare
Atu4773 -1.2 -2.3 two component response regulator compare
Atu3732 -1.2 -6.2 hemolysin compare
Atu3121 -1.2 -1.6 cold shock protein compare
Atu1163 -1.1 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1891 -1.1 -3.3 cobalamin biosynthesis protein compare
Atu3496 -1.1 -2.4 hypothetical protein compare
Atu2798 -1.1 -3.7 precorrin-6y methyltransferase compare
Atu0189 -1.1 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2770 -1.0 -5.2 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu5513 -1.0 -1.9 cold shock protein compare
Atu2569 -1.0 -7.4 thiamine biosynthesis protein compare
Atu1677 -1.0 -3.9 queuine tRNA-ribosyltransferase compare
Atu4001 -1.0 -5.8 3-oxoacyl-ACP synthase compare
Atu0368 -1.0 -3.5 tRNA pseudouridine synthase I compare
Atu1572 -1.0 -5.4 hydrolase compare
Atu4711 -1.0 -5.2 two component sensor kinase compare
Atu2802 -1.0 -5.9 precorrin-8X methylmutase compare
Atu2808 -1.0 -4.9 cobyric acid synthase compare
Atu2804 -1.0 -6.4 cobaltochelatase subunit compare
Atu2803 -0.9 -3.2 Cobalamin biosynthesis associated protein compare
Atu3908 -0.9 -5.9 GntR family transcriptional regulator compare
Atu2127 -0.9 -5.5 L-carnitine dehydratase compare
Atu2532 -0.9 -3.1 transcriptional regulator, MarR family compare
Atu1678 -0.9 -4.4 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu0421 -0.9 -1.6 ABC transporter, membrane spanning protein compare
Atu2555 -0.9 -2.6 L-lysine 2,3-aminomutase compare
Atu1223 -0.9 -1.6 hypothetical protein compare
Atu2800 -0.9 -3.8 precorrin-3B C17-methyltransferase compare
Atu8018 -0.9 -1.0 hypothetical protein compare
Atu4176 -0.9 -2.8 hypothetical protein compare
Atu2799 -0.9 -2.5 precorrin-6x reductase compare
Atu2795 -0.9 -4.3 cobalamin biosynthetic protein compare
Atu4317 -0.9 -2.9 TetR family transcriptional regulator compare
Atu5142 -0.9 -1.5 hypothetical protein compare
Atu4477 -0.8 -4.1 TetR family transcriptional regulator compare
Atu3290 -0.8 -5.2 phosphomethylpyrimidine kinase compare
Atu1182 -0.8 -1.8 hypothetical protein compare
Atu2809 -0.8 -4.1 cobalamin biosynthesis protein compare
Atu0976 -0.8 -2.8 cycL protein compare
Atu3345 -0.8 -2.7 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu3727 -0.8 -2.4 hypothetical protein compare
Atu2020 -0.8 -2.8 transcriptional regulator, TetR family compare
Atu5540 -0.8 -0.9 hypothetical protein compare
Atu1542 -0.8 -3.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4187 -0.8 -1.4 tRNA-Met compare
Atu2793 -0.8 -2.8 cobyrinic acid a,c-diamide synthase compare
Atu2807 -0.8 -4.0 cob(I)alamin adenosyltransferase compare
Atu8203 -0.8 -1.8 hypothetical protein compare
Atu2432 -0.8 -1.3 hypothetical protein compare
Atu2201 -0.7 -1.8 hydrolase compare
Atu3288 -0.7 -3.6 hydroxyethylthiazole kinase compare
Atu3008 -0.7 -0.9 hypothetical protein compare
Atu2821 -0.7 -4.0 transcriptional regulator, GntR family compare
Atu4173 -0.7 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu3486 -0.7 -1.4 DeoR family transcriptional regulator compare
Atu2796 -0.7 -3.6 precorrin-4 C11-methyltransferase compare
Atu5451 -0.7 -0.7 hypothetical protein compare
Atu8156 -0.7 -2.2 hypothetical protein compare
Atu0590 -0.7 -4.5 transcriptional regulator repressor compare
Atu4223 -0.7 -2.0 sarcosine oxidase delta subunit compare
Atu1028 -0.7 -1.3 hypothetical protein compare
Atu2805 -0.7 -3.8 cobalamin synthesis protein compare
Atu2123 -0.7 -3.2 methylenetetrahydrofolate reductase compare
Atu5160 -0.7 -1.8 transcriptional regulator protein compare
Atu0602 -0.7 -4.2 glutamine synthetase compare
Atu1644 -0.7 -2.2 hypothetical protein compare
Atu0601 -0.7 -4.0 oxidoreductase compare
Atu4179 -0.7 -3.1 hypothetical protein compare
Atu0141 -0.7 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1717 -0.7 -4.5 long-chain fatty acid transport protein compare
Atu0981 -0.7 -5.3 glutamate-ammonia-ligase adenylyltransferase compare
Atu2376 -0.7 -0.5 hypothetical protein compare
Atu2286 -0.7 -1.0 hypothetical protein compare
Atu5043 -0.7 -1.9 hypothetical protein compare
Atu3289 -0.6 -2.4 thiamine-phosphate pyrophosphorylase compare
Atu1339 -0.6 -2.4 ribonuclease E compare
Atu3337 -0.6 -4.9 LacI family transcriptional regulator compare
Atu4671 -0.6 -2.2 response regulator compare
Atu0106 -0.6 -3.0 cold shock protein compare
Atu0190 -0.6 -3.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4075 -0.6 -2.4 glycogen synthase compare
Atu3342 -0.6 -3.6 trehalose utilization-like protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Melibiose in Agrobacterium fabrum C58

For carbon source Melibiose across organisms