Experiment set2IT059 for Sinorhizobium meliloti 1021

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
SMc03069 +7.3 20.7 6-phosphogluconolactonase compare
SMc02659 +7.1 12.4 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc04003 +6.9 17.0 50S ribosomal protein L36 compare
SMc00647 +6.9 28.4 ribosomal large subunit pseudouridine synthase compare
SMc00131 +6.4 44.5 transcriptional regulator compare
SMc00349 +6.0 34.4 GTP-binding protein LepA compare
SMc02112 +5.9 28.2 hypothetical protein compare
SMc00711 +5.7 35.8 cyclohexadienyl dehydrogenase compare
SMc00565 +5.4 15.3 50S ribosomal protein L9 compare
SMc02137 +5.3 26.5 ornithine carbamoyltransferase compare
SMc03900 +5.3 35.9 cyclic beta-1,2-glucan ABc transporter compare
SMc01099 +5.3 13.8 tRNA pseudouridine synthase A compare
SMc02695 +5.2 32.5 GTP-dependent nucleic acid-binding protein EngD compare
SMc04382 +5.1 36.9 beta-(1,2)-glucan production associated transmembrane protein compare
SMc01124 +5.0 12.0 PII uridylyl-transferase compare
SMc00566 +4.9 9.8 hypothetical protein compare
SMc00419 +4.9 16.3 glutathione synthetase compare
SMc03826 +4.8 16.3 argininosuccinate synthase compare
SMc01206 +4.6 12.6 queuine tRNA-ribosyltransferase compare
SMc00458 +4.4 36.2 transcriptional regulator compare
SMc01275 +4.4 10.4 ribosomal large subunit pseudouridine synthase C protein compare
SMc02558 +4.3 15.6 hypothetical protein compare
SMc03855 +4.3 16.6 hypothetical protein compare
SMc00495 +4.2 12.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02503 +4.1 12.1 hypothetical protein compare
SMc04094 +4.0 13.9 hypothetical protein compare
SMa2020 +3.9 11.4 Transcriptional regulator compare
SMc03863 +3.7 4.2 50S ribosomal protein L19 compare
SMc02050 +3.7 16.8 trigger factor compare
SMc02367 +3.7 25.9 sensor histidine kinase transmembrane protein compare
SMc00150 +3.6 33.2 hypothetical protein compare
SMc01207 +3.5 13.9 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02365 +3.5 12.2 protease precursor protein compare
SMc01215 +3.4 17.9 carbamoyl phosphate synthase large subunit compare
SMc00427 +3.4 16.3 peptide chain release factor RF-3 protein compare
SMc02366 +3.3 25.5 transcriptional regulator compare
SMc00129 +3.3 20.3 sensor histidine kinase compare
SMc04385 +3.2 10.6 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc01569 +3.2 9.4 carbamoyl phosphate synthase small subunit compare
SMc02755 +3.2 18.0 S-adenosyl-L-homocysteine hydrolase compare
SMc00321 +3.2 23.4 tRNA pseudouridine synthase B compare
SMc04001 +3.2 5.2 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc04454 +3.1 19.8 ABC transporter ATP-binding protein compare
SMc02138 +3.1 7.1 acetylornithine transaminase compare
SMc01801 +3.0 4.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc00320 +2.9 8.1 ribosome-binding factor A compare
SMc02166 +2.8 20.3 dihydroorotase compare
SMc02055 +2.8 6.0 phytoene synthase compare
SMc00169 +2.7 22.6 malic enzyme compare
SMc00482 +2.7 19.5 hypothetical protein compare
SMc01439 +2.6 9.9 hypothetical protein compare
SMc02245 +2.6 13.0 dihydroorotate dehydrogenase 2 compare
SMc00522 +2.6 16.7 ATP-dependent RNA helicase compare
SMc04235 +2.6 12.5 tRNA-dihydrouridine synthase A compare
SMc00710 +2.5 6.3 histidinol-phosphate aminotransferase compare
SMc00761 +2.5 18.1 oxidoreductase compare
SMc02757 +2.5 3.8 hypothetical protein compare
SMc00017 +2.5 5.5 homoserine kinase compare
SMc01907 +2.5 20.4 hypothetical protein compare
SMc00998 +2.5 14.9 signal peptide protein compare
SMc01222 +2.4 6.9 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc03157 +2.4 15.8 outer membrane lipoprotein transmembrane compare
SMc02058 +2.4 4.7 YAJC protein compare
SMc00403 +2.4 13.7 NOL1/NOP2/SUN family signature protein compare
SMc02095 +2.4 11.6 hypothetical protein compare
SMc02504 +2.4 7.8 transcriptional regulator compare
SMc01223 +2.4 4.0 transcriptional regulator compare
SMc03111 +2.4 18.1 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc01858 +2.4 3.1 S-adenosyl-methyltransferase MraW compare
SMc02309 +2.3 11.7 arsenate reductase compare
SMc00070 +2.3 12.3 signal peptide protein compare
SMc01726 +2.3 13.3 acetylglutamate kinase compare
SMc04000 +2.3 2.7 hypothetical protein compare
SMc00622 +2.2 14.9 ribonuclease D protein compare
SM_b21397 +2.2 1.4 hypothetical protein compare
SMc03933 +2.2 17.9 sarcosine oxidase subunit B protein compare
SMc00727 +2.2 15.7 3-hydroxybutyryl-CoA dehydrogenase compare
SMc02766 +2.2 16.9 tryptophan synthase subunit beta compare
SMc04383 +2.1 8.8 putative hydrolase, required for lysine catabolism (from data) compare
SMc03931 +2.1 17.0 sarcosine oxidase subunit alpha compare
SMc01120 +2.1 8.9 hypothetical protein compare
SM_b20613 +2.1 12.3 C4-dicarboxylate transport transcriptional regulator compare
SMc03930 +2.1 4.0 sarcosine oxidase subunit gamma compare
SMc02246 +2.0 3.6 hypothetical protein compare
SMc02765 +2.0 13.4 tryptophan synthase subunit alpha compare
SMc00009 +2.0 8.5 cytochrome C oxidase subunit II protein compare
SMc01024 +2.0 3.9 preprotein translocase subunit SecG compare
SMc01613 +1.9 14.3 ribose-5-phosphate isomerase B compare
SMc03158 +1.9 6.5 ABC transporter permease compare
SM_b20684 +1.9 14.7 hypothetical protein compare
SMc00450 +1.9 6.2 protoheme IX farnesyltransferase compare
SMc03159 +1.9 2.2 ABC transporter ATP-binding protein compare
SMc03932 +1.8 8.5 sarcosine oxidase subunit delta compare
SMc02273 +1.8 15.5 fatty acid synthase transmembrane protein compare
SMc01768 +1.8 5.2 transcriptional regulator compare
SMc01852 +1.8 10.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc00648 +1.8 8.9 hypothetical protein compare
SMc02272 +1.7 8.8 acyl-transferase transferase compare
SMc03973 +1.7 7.4 hypothetical protein compare
SM_b20131 +1.7 1.4 oxidoreductase compare
SMc00414 +1.7 9.6 hypothetical protein compare
SMc04384 +1.6 3.9 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc01193 +1.6 10.1 hypothetical protein compare
SM_b20146 +1.6 5.6 pyridoxal phosphate biosynthetic protein compare
SM_b21192 +1.6 11.0 fructose-1,6-bisphosphate aldolase compare
SM_b21265 +1.6 5.6 glycosyltransferase compare
SMc00325 +1.6 9.7 hypothetical protein compare
SMc04002 +1.6 8.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02793 +1.5 8.4 hypothetical protein compare
SMc02384 +1.5 7.9 glycosyltransferase transmembrane protein compare
SMc01698 +1.5 9.5 oxidoreductase compare
SMc02640 +1.5 6.0 UDP-glucuronic acid epimerase compare
SM_b21181 +1.5 7.8 glutaryl-CoA dehydrogenase compare
SMc02497 +1.5 4.0 hypothetical protein compare
SMc00904 +1.5 6.3 hypothetical protein compare
SMc02056 +1.5 3.1 hypothetical protein compare
SMc04441 +1.5 1.6 hypothetical protein compare
SMc01885 +1.5 9.9 aminopeptidase P protein compare
SMc00576 +1.4 2.2 hypothetical protein compare
SMc00247 +1.4 10.2 phosphatidylcholine synthase compare
SMc02520 +1.4 9.7 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SM_b21170 +1.4 6.0 guanylate kinase compare
SMc03028 +1.4 2.2 flagellar basal body rod protein FlgC compare
SMc01131 +1.4 4.4 hypothetical protein compare
SMc03037 +1.3 1.2 flagellin A compare
SMc00026 +1.3 6.1 hypothetical protein compare
SMc01153 +1.3 1.5 enoyl-CoA hydratase compare
SMc02478 +1.3 8.0 hypothetical protein compare
SMc01273 +1.3 9.8 S-formylglutathione hydrolase compare
SMc01587 +1.3 1.9 hypothetical protein compare
SMc00302 +1.3 4.6 hypothetical protein compare
SMc04081 +1.3 7.1 glycosyl transferase (sulfolipid biosynthesis) protein compare
SMa0887 +1.2 2.3 hypothetical protein compare
SMc00787 +1.2 5.9 peptide ABC transporter permease compare
SMc01800 +1.2 2.3 cytochrome C oxidase assembly transmembrane protein compare
SMc01006 +1.2 5.3 hypothetical protein compare
SMc03880 +1.2 7.1 hypothetical protein compare
SMc00064 +1.2 5.0 hypothetical protein compare
SMc02269 +1.2 5.1 capsular polysaccharide biosynthesis/export protein compare
SMc02136 +1.2 5.4 Hsp33-like chaperonin compare
SMc03961 +1.2 6.8 sulfolipid (UDP-sulfoquinovose) biosynthesis protein compare
SMc04882 +1.2 2.9 transcriptional regulator compare
SM_b20994 +1.2 3.4 hypothetical protein compare
SM_b21372 +1.2 8.5 LacI family transcriptional regulator compare
SMc01256 +1.2 6.5 L-serine dehydratase compare
SMc00709 +1.2 3.9 hypothetical protein compare
SMc00061 +1.2 5.4 hypothetical protein compare
SMc02270 +1.1 9.3 capsular polysaccharide biosynthesis\export transmembrane protein compare
SMc00329 +1.1 3.3 iron response regulator protein compare
SMc03839 +1.1 1.5 hypothetical protein compare
SM_b21374 +1.1 4.5 tagatose kinase (EC 2.7.1.101) (from data) compare
SMc00973 +1.1 2.8 hypothetical protein compare
SMc00826 +1.1 3.5 16S ribosomal RNA methyltransferase RsmE compare
SMc04085 +1.1 2.9 hypothetical protein compare
SMc02181 +1.1 8.8 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
SMc00010 +1.1 3.5 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02981 +1.1 1.5 amino acid efflux transmembrane protein compare
SM_b20026 +1.1 2.2 hypothetical protein compare
SMc02434 +1.1 1.8 hypothetical protein compare
SM_b20751 +1.1 1.7 3-hydroxyisobutyrate dehydrogenase compare
SMc01139 +1.1 5.5 RNA polymerase factor sigma-54 compare
SM_b20815 +1.0 1.6 outer membrane protein assembly protein compare
SMc03792 +1.0 1.3 hypothetical protein compare
SMa2029 +1.0 1.3 amidohydrolase compare
SM_b21252 +1.0 8.7 glycosyltransferase compare
SM_b21256 +1.0 7.3 nucleotide sugar oxidase compare
SMc02271 +1.0 5.1 ribitol type dehydrogenase compare
SM_b21253 +1.0 6.2 hypothetical protein compare
SMc00352 +1.0 1.9 acetyltransferase compare
SM_b21264 +1.0 7.5 hypothetical protein compare
SMc02575 +1.0 5.5 ATP-dependent protease peptidase subunit compare
SMa5000 +1.0 1.4 hypothetical protein compare
SMc02983 +1.0 5.4 ornithine, DAP, or arginine decarboxylase compare
SM_b20757 +1.0 6.2 methylmalonyl-CoA mutase compare
SMc01765 +1.0 1.9 hypothetical protein compare
SMc01847 +1.0 3.5 methyltransferase compare
SMc01939 +1.0 1.0 urease subunit beta compare
SMa0854 +1.0 0.7 3-ketoacyl-ACP reductase compare
SMc00877 +1.0 6.3 transcriptional regulator compare
SMc00789 +1.0 6.3 peptide ABC transporter ATP-binding protein compare
SM_b21491 +1.0 5.4 hypothetical protein compare
SM_b21208 +1.0 1.8 TetR family transcriptional regulator compare
SMc01108 +1.0 5.1 tRNA (guanine-N(7)-)-methyltransferase compare
SMa1630 +1.0 1.4 hypothetical protein compare
SMc02684 +0.9 5.8 hydrolase/peptidase compare
SMc00075 +0.9 3.7 ribosomal-protein-alanine acetyltransferase compare
SMc03153 +0.9 4.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc02383 +0.9 6.2 hypothetical protein compare
SMa1170 +0.9 1.8 hypothetical protein compare
SMc02577 +0.9 5.6 ATP-dependent protease ATP-binding subunit HslU compare
SM_b20819 +0.9 1.5 ferredoxin compare
SMa2289 +0.9 1.5 hypothetical protein compare
SMc01834 +0.9 1.5 hypothetical protein compare
SMc00171 +0.9 5.6 hypothetical protein compare
SMc03963 +0.9 5.1 sulfolipid biosynthesis protein compare
SMc01987 +0.9 7.1 dehydrogenase compare
SMc03112 +0.9 7.2 B12-dependent methionine synthase compare
SMc00539 +0.9 5.5 hypothetical protein compare
SMc02051 +0.9 1.2 hypothetical protein compare
SM_b21266 +0.9 5.0 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment