Experiment set2IT057 for Cupriavidus basilensis FW507-4G11

Compare to:

D-Fructose carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS29610 +1.2 1.5 cytochrome C2 compare
RR42_RS21470 +1.2 1.4 hypothetical protein compare
RR42_RS23140 +1.2 1.2 peptidylprolyl isomerase compare
RR42_RS07150 +1.2 1.8 hypothetical protein compare
RR42_RS08770 +1.2 1.4 2-nitropropane dioxygenase compare
RR42_RS09085 +1.1 2.2 C4-dicarboxylate ABC transporter permease compare
RR42_RS00440 +1.1 1.5 hypothetical protein compare
RR42_RS26080 +1.0 1.2 hypothetical protein compare
RR42_RS03035 +1.0 1.3 membrane protein compare
RR42_RS17880 +1.0 1.5 hypothetical protein compare
RR42_RS10855 +1.0 1.3 diguanylate phosphodiesterase compare
RR42_RS24760 +1.0 1.5 hypothetical protein compare
RR42_RS06735 +1.0 1.7 hypothetical protein compare
RR42_RS16175 +1.0 1.8 enoyl-CoA hydratase compare
RR42_RS04850 +0.9 1.6 hypothetical protein compare
RR42_RS20370 +0.9 0.8 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS23870 +0.9 1.5 hypothetical protein compare
RR42_RS15060 +0.9 3.2 membrane protein compare
RR42_RS03020 +0.9 1.3 MarR family transcriptional regulator compare
RR42_RS16335 +0.9 1.8 hypothetical protein compare
RR42_RS25510 +0.8 1.7 short-chain dehydrogenase compare
RR42_RS04810 +0.8 1.8 glycine/betaine ABC transporter permease compare
RR42_RS16360 +0.8 1.6 transposase compare
RR42_RS24550 +0.8 1.4 hypothetical protein compare
RR42_RS01510 +0.8 4.3 N-acetylglutamate synthase compare
RR42_RS20260 +0.8 1.6 hypothetical protein compare
RR42_RS07920 +0.8 1.3 cyclophilin-like superfamily protein compare
RR42_RS08220 +0.8 1.7 hypothetical protein compare
RR42_RS12240 +0.8 1.4 hypothetical protein compare
RR42_RS24520 +0.8 2.3 hypothetical protein compare
RR42_RS05750 +0.8 1.4 fructose 2,6-bisphosphatase compare
RR42_RS27230 +0.8 2.3 DNA-binding protein compare
RR42_RS06445 +0.8 2.9 NAD(P)H-quinone oxidoreductase compare
RR42_RS21175 +0.8 1.7 transporter compare
RR42_RS27470 +0.8 1.1 peroxiredoxin OsmC compare
RR42_RS20965 +0.8 1.6 transferase compare
RR42_RS22590 +0.8 1.0 organic hydroperoxide resistance protein compare
RR42_RS34570 +0.8 1.6 hypothetical protein compare
RR42_RS13685 +0.7 1.5 cupin compare
RR42_RS23230 +0.7 1.6 glycerate kinase compare
RR42_RS15120 +0.7 1.4 4-oxalocrotonate tautomerase compare
RR42_RS10500 +0.7 3.2 hypothetical protein compare
RR42_RS21055 +0.7 2.0 excisionase compare
RR42_RS09060 +0.7 1.9 glucose-6-phosphate isomerase compare
RR42_RS12880 +0.7 2.6 membrane protein compare
RR42_RS29630 +0.7 2.5 hypothetical protein compare
RR42_RS21690 +0.7 0.9 acetyltransferase compare
RR42_RS05700 +0.7 3.4 hypothetical protein compare
RR42_RS20855 +0.7 2.5 cold-shock protein compare
RR42_RS33425 +0.7 2.6 cobalt-zinc-cadmium resistance protein compare
RR42_RS33610 +0.7 2.1 ABC transporter ATP-binding protein compare
RR42_RS12085 +0.7 1.4 glyoxalase compare
RR42_RS16575 +0.7 1.9 acyl-CoA dehydrogenase compare
RR42_RS25400 +0.7 2.2 MarR family transcriptional regulator compare
RR42_RS36245 +0.6 2.3 excisionase compare
RR42_RS36920 +0.6 1.1 TetR family transcriptional regulator compare
RR42_RS35900 +0.6 3.9 hypothetical protein compare
RR42_RS08810 +0.6 3.2 nitrate reductase compare
RR42_RS09310 +0.6 1.3 IclR family transcriptional regulator compare
RR42_RS34450 +0.6 2.6 glycosyl transferase compare
RR42_RS21080 +0.6 1.9 3-isopropylmalate dehydratase compare
RR42_RS25455 +0.6 1.1 acetyl-CoA acetyltransferase compare
RR42_RS24690 +0.6 1.0 hypothetical protein compare
RR42_RS10490 +0.6 1.3 DNA-binding protein compare
RR42_RS00815 +0.6 3.0 hypothetical protein compare
RR42_RS34745 +0.6 2.7 hypothetical protein compare
RR42_RS24785 +0.6 3.0 NAD-dependent dehydratase compare
RR42_RS27035 +0.6 1.7 hypothetical protein compare
RR42_RS05755 +0.6 1.5 enoyl-CoA hydratase compare
RR42_RS35240 +0.6 1.1 acyl-CoA dehydrogenase compare
RR42_RS12170 +0.6 2.2 fimbrial protein compare
RR42_RS03715 +0.6 2.2 inositol monophosphatase compare
RR42_RS13420 +0.6 1.5 phosphohistidine phosphatase compare
RR42_RS02850 +0.6 1.7 phoH-like protein compare
RR42_RS08790 +0.6 1.2 zinc-binding protein compare
RR42_RS23305 +0.6 0.9 hypothetical protein compare
RR42_RS02235 +0.6 2.1 3-phosphoglycerate dehydrogenase compare
RR42_RS24490 +0.6 1.6 hypothetical protein compare
RR42_RS02470 +0.6 1.1 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS17375 +0.6 1.0 hypothetical protein compare
RR42_RS30445 +0.6 1.5 cation:proton antiporter compare
RR42_RS19645 +0.6 1.5 DNA topoisomerase compare
RR42_RS09575 +0.6 2.4 hypothetical protein compare
RR42_RS16655 +0.6 2.5 glutamine cyclotransferase compare
RR42_RS13305 +0.5 1.0 hypothetical protein compare
RR42_RS33815 +0.5 0.7 isochorismatase compare
RR42_RS33270 +0.5 2.1 hypothetical protein compare
RR42_RS01785 +0.5 2.4 PTS fructose transporter subunit IIA compare
RR42_RS18520 +0.5 1.8 hypothetical protein compare
RR42_RS27215 +0.5 1.7 LysR family transcriptional regulator compare
RR42_RS05780 +0.5 2.0 hypothetical protein compare
RR42_RS21790 +0.5 1.8 short-chain dehydrogenase compare
RR42_RS28315 +0.5 1.4 GntR family transcriptional regulator compare
RR42_RS16185 +0.5 2.4 malonyl-CoA decarboxylase compare
RR42_RS13675 +0.5 2.0 short-chain dehydrogenase compare
RR42_RS34585 +0.5 0.7 LysR family transcriptional regulator compare
RR42_RS21040 +0.5 0.7 hypothetical protein compare
RR42_RS05410 +0.5 1.6 acetyltransferase compare
RR42_RS18390 +0.5 1.7 hypothetical protein compare
RR42_RS23650 +0.5 1.7 flagellar protein compare
RR42_RS25650 +0.5 0.9 hypothetical protein compare
RR42_RS00755 +0.5 2.4 3-oxoadipate enol-lactonase compare
RR42_RS07265 +0.5 0.8 hypothetical protein compare
RR42_RS28395 +0.5 2.0 DNA-binding protein compare
RR42_RS13890 +0.5 1.4 histidine kinase compare
RR42_RS05600 +0.5 1.6 acyl-CoA dehydrogenase compare
RR42_RS23915 +0.5 2.7 hypothetical protein compare
RR42_RS27320 +0.5 1.1 ferredoxin compare
RR42_RS30285 +0.5 1.5 amidohydrolase compare
RR42_RS24270 +0.5 2.1 hypothetical protein compare
RR42_RS31135 +0.5 2.5 hypothetical protein compare
RR42_RS23675 +0.5 1.7 hypothetical protein compare
RR42_RS00235 +0.5 1.7 membrane protein compare
RR42_RS12185 +0.5 0.9 LysR family transcriptional regulator compare
RR42_RS07090 +0.5 1.3 hypothetical protein compare
RR42_RS33695 +0.5 1.0 membrane protein compare
RR42_RS35320 +0.5 2.0 membrane protein compare
RR42_RS07130 +0.5 1.2 hypothetical protein compare
RR42_RS24945 +0.5 2.3 hypothetical protein compare
RR42_RS09840 +0.5 2.6 hypothetical protein compare
RR42_RS26770 +0.5 1.2 extradiol dioxygenase compare
RR42_RS07430 +0.5 2.6 Fe-S oxidoreductase compare
RR42_RS24665 +0.5 1.5 hypothetical protein compare
RR42_RS19635 +0.5 0.7 hypothetical protein compare
RR42_RS28580 +0.5 1.9 LysR family transcriptional regulator compare
RR42_RS33070 +0.5 1.0 oxidoreductase compare
RR42_RS34535 +0.5 0.9 membrane protein compare
RR42_RS36370 +0.5 1.4 dihydrodipicolinate synthase compare
RR42_RS37245 +0.5 1.5 MazF family transcriptional regulator compare
RR42_RS00655 +0.5 1.6 membrane protein compare
RR42_RS15970 +0.5 1.1 lipoprotein compare
RR42_RS11435 +0.5 2.1 ABC transporter permease compare
RR42_RS23185 +0.5 2.2 membrane protein compare
RR42_RS25660 +0.5 1.9 cytochrome C biogenesis protein compare
RR42_RS31495 +0.5 1.1 Cro/Cl family transcriptional regulator compare
RR42_RS14175 +0.5 2.4 molybdenum cofactor biosynthesis protein MoaA compare
RR42_RS15240 +0.5 1.6 membrane protein compare
RR42_RS33910 +0.5 1.1 LysR family transcriptional regulator compare
RR42_RS02205 +0.5 0.9 succinate dehydrogenase compare
RR42_RS31750 +0.5 1.6 IclR family transcriptional regulator compare
RR42_RS25840 +0.5 1.8 ArsR family transcriptional regulator compare
RR42_RS01210 +0.5 1.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
RR42_RS12680 +0.5 1.7 hypothetical protein compare
RR42_RS10520 +0.5 1.6 3-oxoacyl-ACP reductase compare
RR42_RS37055 +0.5 1.2 hypothetical protein compare
RR42_RS11270 +0.5 3.2 aconitate hydratase compare
RR42_RS22040 +0.5 1.4 Hcp family T6SS protein CtsH1 compare
RR42_RS10440 +0.5 1.3 heat-shock protein compare
RR42_RS20010 +0.5 1.8 hypothetical protein compare
RR42_RS00525 +0.5 1.2 MarR family transcriptional regulator compare
RR42_RS35290 +0.5 1.7 Fe-S oxidoreductase compare
RR42_RS28410 +0.5 1.0 dimethylmenaquinone methyltransferase compare
RR42_RS32085 +0.5 0.6 hypothetical protein compare
RR42_RS32960 +0.5 0.9 2-dehydropantoate 2-reductase compare
RR42_RS20145 +0.5 1.7 CoA-binding protein compare
RR42_RS23110 +0.5 0.5 isochorismatase compare
RR42_RS27100 +0.5 2.2 hypothetical protein compare
RR42_RS28445 +0.5 2.3 ABC transporter substrate-binding protein compare
RR42_RS32710 +0.5 1.1 hypothetical protein compare
RR42_RS14520 +0.4 0.5 mobilization protein compare
RR42_RS07710 +0.4 1.8 chloroperoxidase compare
RR42_RS24000 +0.4 2.1 hypothetical protein compare
RR42_RS06470 +0.4 1.7 hypothetical protein compare
RR42_RS22030 +0.4 1.0 hypothetical protein compare
RR42_RS04545 +0.4 3.1 deacetylase compare
RR42_RS01190 +0.4 2.3 peptidase M48 compare
RR42_RS03530 +0.4 0.7 hypothetical protein compare
RR42_RS30405 +0.4 2.5 GntR family transcriptional regulator compare
RR42_RS09835 +0.4 0.7 chemotaxis protein compare
RR42_RS31965 +0.4 1.3 LuxR family transcriptional regulator compare
RR42_RS03980 +0.4 1.9 Fis family transcriptional regulator compare
RR42_RS05115 +0.4 0.9 LysR family transcriptional regulator compare
RR42_RS03525 +0.4 0.7 type VI secretion system effector compare
RR42_RS21960 +0.4 1.6 cysteine synthase compare
RR42_RS33430 +0.4 1.5 LysR family transcriptional regulator compare
RR42_RS21955 +0.4 0.4 hypothetical protein compare
RR42_RS31505 +0.4 1.1 hypothetical protein compare
RR42_RS36355 +0.4 1.1 (2Fe-2S)-binding protein compare
RR42_RS20775 +0.4 0.6 hypothetical protein compare
RR42_RS21285 +0.4 1.8 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS13620 +0.4 0.6 ferredoxin compare
RR42_RS09300 +0.4 0.9 aromatic ring-opening dioxygenase LigB compare
RR42_RS10410 +0.4 1.4 hypothetical protein compare
RR42_RS24045 +0.4 2.3 gentisate 1,2-dioxygenase compare
RR42_RS35755 +0.4 1.7 flagellar biosynthesis protein FlhG compare
RR42_RS34665 +0.4 1.6 membrane protein compare
RR42_RS29060 +0.4 2.3 LacI family transcriptional regulator compare
RR42_RS04275 +0.4 1.1 hypothetical protein compare
RR42_RS14785 +0.4 1.7 hypothetical protein compare
RR42_RS22165 +0.4 0.9 hypothetical protein compare
RR42_RS01655 +0.4 1.1 AMP-dependent synthetase compare
RR42_RS06740 +0.4 1.2 hypothetical protein compare
RR42_RS31300 +0.4 1.1 TetR family transcriptional regulator compare
RR42_RS27395 +0.4 1.8 GntR family transcriptional regulator compare
RR42_RS10110 +0.4 1.7 phosphonate ABC transporter substrate-binding protein compare
RR42_RS15795 +0.4 1.5 spore coat protein compare
RR42_RS24880 +0.4 1.8 hypothetical protein compare
RR42_RS33870 +0.4 1.7 hypothetical protein compare
RR42_RS26560 +0.4 1.3 hypothetical protein compare
RR42_RS00915 +0.4 1.5 glutathione S-transferase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Fructose in Cupriavidus basilensis FW507-4G11

For carbon source D-Fructose across organisms