Experiment set2IT054 for Pseudomonas simiae WCS417

Compare to:

D-Glucose-6-Phosphate sodium salt carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_01620 +4.5 14.4 preprotein translocase subunit SecB compare
PS417_05240 +4.2 34.0 Lon protease compare
PS417_10720 +2.6 9.9 chemotaxis protein CheY compare
PS417_16370 +2.5 14.8 chemotaxis protein CheY compare
PS417_19825 +2.4 13.6 ATPase AAA compare
PS417_19695 +1.8 10.9 flagellar biosynthesis sigma factor compare
PS417_06365 +1.6 11.5 RNA polymerase sigma factor compare
PS417_21570 +1.6 9.4 flagellar basal body rod protein FlgB compare
PS417_21565 +1.6 7.7 flagellar basal body rod protein FlgC compare
PS417_19885 +1.5 6.8 flagellar basal body rod protein FlgG compare
PS417_21585 +1.5 10.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19880 +1.5 10.7 flagellar basal body L-ring protein compare
PS417_27135 +1.4 2.1 glutamine synthetase compare
PS417_19765 +1.4 9.1 flagellar hook-length control protein compare
PS417_21555 +1.4 8.6 flagellar hook protein FlgE compare
PS417_19870 +1.4 5.1 flagellar rod assembly protein FlgJ compare
PS417_19740 +1.3 7.5 flagellar biosynthesis protein flip compare
PS417_19725 +1.3 5.3 flagellar biosynthesis protein FlhB compare
PS417_19830 +1.2 3.0 flagellar assembly protein FliT compare
PS417_16160 +1.2 1.4 ABC transporter substrate-binding protein compare
PS417_19730 +1.2 4.5 flagellar biosynthesis protein FliR compare
PS417_19560 +1.2 8.8 amino acid ABC transporter substrate-binding protein compare
PS417_22060 +1.1 2.7 hypothetical protein compare
PS417_19790 +1.1 3.5 ATP synthase compare
PS417_19745 +1.1 6.1 flagellar assembly protein FliO compare
PS417_27435 +1.1 6.7 polyphosphate kinase compare
PS417_24895 +1.1 2.5 hypothetical protein compare
PS417_19795 +1.1 7.5 flagellar assembly protein FliH compare
PS417_19835 +1.1 1.8 flagellar biosynthesis protein FliS compare
PS417_19865 +1.0 7.0 flagellar hook protein FlgK compare
PS417_02555 +1.0 8.3 exoribonuclease R compare
PS417_19735 +1.0 4.7 flagellar biosynthesis protein FliQ compare
PS417_07940 +1.0 3.0 hypothetical protein compare
PS417_15820 +1.0 1.6 universal stress protein UspA compare
PS417_10040 +1.0 1.4 MFS transporter compare
PS417_08545 +1.0 2.5 aromatic ring-opening dioxygenase LigB compare
PS417_03330 +1.0 3.2 Short chain fatty acid transporter compare
PS417_19785 +1.0 2.7 flagellar biogenesis protein compare
PS417_19710 +1.0 7.6 flagellar biosynthesis protein FlhA compare
PS417_07890 +0.9 1.6 hypothetical protein compare
PS417_11040 +0.9 4.0 aldose epimerase compare
PS417_24430 +0.9 2.5 3-dehydroquinate dehydratase compare
PS417_19755 +0.9 2.0 flagellar motor switch protein FliM compare
PS417_19860 +0.9 7.3 flagellar hook protein FlgL compare
PS417_28265 +0.9 0.8 pyridoxamine kinase compare
PS417_06970 +0.9 1.3 LysR family transcriptional regulator compare
PS417_15495 +0.9 1.7 FAD-dependent oxidoreductase compare
PS417_21595 +0.8 3.2 flagellar biosynthesis protein FlgN compare
PS417_10995 +0.8 2.6 GntR family transcriptional regulator compare
PS417_26175 +0.8 1.2 sarcosine oxidase subunit gamma compare
PS417_02440 +0.8 2.7 flagellar motor protein MotB compare
PS417_19840 +0.8 6.3 flagellar cap protein FliD compare
PS417_00455 +0.8 2.2 hypothetical protein compare
PS417_24885 +0.8 2.7 transcriptional regulator compare
PS417_26530 +0.8 1.3 hypothetical protein compare
PS417_14065 +0.8 4.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_17645 +0.8 1.6 RND transporter compare
PS417_02435 +0.8 4.6 flagellar motor protein MotA compare
PS417_21560 +0.7 2.8 flagellar basal body rod modification protein FlgD compare
PS417_22115 +0.7 3.2 transcriptional regulator compare
PS417_01630 +0.7 1.2 hypothetical protein compare
PS417_01585 +0.7 3.1 amino acid ABC transporter substrate-binding protein compare
PS417_01285 +0.7 2.3 haloacid dehalogenase compare
PS417_25155 +0.7 1.4 hypothetical protein compare
PS417_02720 +0.7 1.3 TetR family transcriptional regulator compare
PS417_21375 +0.7 3.7 ADP-ribosylglycohydrolase compare
PS417_11870 +0.7 3.8 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_12805 +0.7 5.2 glycogen branching protein compare
PS417_01400 +0.7 2.0 hypothetical protein compare
PS417_01790 +0.7 4.2 glucan biosynthesis protein G compare
PS417_11875 +0.7 3.4 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_15125 +0.7 2.3 glutathione S-transferase compare
PS417_21015 +0.7 1.1 EstX protein compare
PS417_04960 +0.7 1.8 hypothetical protein compare
PS417_23950 +0.7 1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_22270 +0.7 2.9 hypothetical protein compare
PS417_05975 +0.7 0.9 chemotaxis protein CheW compare
PS417_19850 +0.7 4.8 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_15770 +0.7 1.1 pyridoxine 5'-phosphate oxidase compare
PS417_05635 +0.7 3.1 membrane protein compare
PS417_04875 +0.7 1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02485 +0.7 1.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_15975 +0.7 1.7 glutamate carboxypeptidase compare
PS417_17675 +0.7 1.6 ABC transporter compare
PS417_01795 +0.7 4.9 glucosyltransferase MdoH compare
PS417_07400 +0.6 1.5 hypothetical protein compare
PS417_14245 +0.6 1.3 hypothetical protein compare
PS417_10015 +0.6 1.1 hypothetical protein compare
PS417_00755 +0.6 0.8 biofilm PGA synthesis protein PgaD compare
PS417_09610 +0.6 3.4 beta-xylosidase compare
PS417_14175 +0.6 2.4 ArsC family transcriptional regulator compare
PS417_03705 +0.6 2.5 2-alkenal reductase compare
PS417_14650 +0.6 3.2 chemotaxis protein compare
PS417_26125 +0.6 2.8 glutathione S-transferase compare
PS417_14280 +0.6 1.5 hypothetical protein compare
PS417_00960 +0.6 1.3 transcriptional regulator compare
PS417_03455 +0.6 1.4 type III secretion protein compare
PS417_11825 +0.6 1.4 transcriptional regulator compare
PS417_27940 +0.6 1.4 type VI secretion protein compare
PS417_03725 +0.6 1.5 acyltransferase compare
PS417_27070 +0.6 3.6 alpha/beta hydrolase compare
PS417_00065 +0.6 1.0 3-methyladenine DNA glycosylase compare
PS417_03970 +0.6 1.3 1-phosphofructokinase compare
PS417_05100 +0.6 1.7 RNA polymerase sigma factor compare
PS417_03350 +0.6 2.3 cytochrome C peroxidase compare
PS417_21990 +0.6 1.4 LacI family transcriptional regulator compare
PS417_08430 +0.6 4.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_10135 +0.6 1.8 phage tail protein compare
PS417_18165 +0.6 1.5 membrane protein compare
PS417_26235 +0.6 2.6 (Fe-S)-binding protein compare
PS417_21255 +0.6 1.6 hypothetical protein compare
PS417_25645 +0.6 3.4 peptidase M23 compare
PS417_14805 +0.6 1.5 AraC family transcriptional regulator compare
PS417_15510 +0.6 1.6 hypothetical protein compare
PS417_05235 +0.6 1.1 peptidase inhibitor I42 compare
PS417_01965 +0.6 1.5 fimbriae biosynthesis protein compare
PS417_01180 +0.6 3.0 ribosomal protein S6 modification protein compare
PS417_28225 +0.6 1.3 hypothetical protein compare
PS417_19820 +0.6 2.9 histidine kinase compare
PS417_21655 +0.6 1.1 aspartate kinase compare
PS417_09570 +0.5 3.3 GCN5 family acetyltransferase compare
PS417_11075 +0.5 1.6 hydroxypyruvate isomerase compare
PS417_13495 +0.5 1.8 nuclease compare
PS417_16980 +0.5 1.9 exonuclease III compare
PS417_12390 +0.5 1.3 hypothetical protein compare
PS417_07615 +0.5 3.0 TetR family transcriptional regulator compare
PS417_21430 +0.5 1.5 3-oxoacyl-ACP synthase compare
PS417_03920 +0.5 1.7 dephospho-CoA kinase compare
PS417_27395 +0.5 2.1 amino acid ABC transporter permease compare
PS417_11020 +0.5 2.2 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PS417_08415 +0.5 3.8 hypothetical protein compare
PS417_15880 +0.5 2.8 GNAT family acetyltransferase compare
PS417_24650 +0.5 1.6 membrane protein compare
PS417_27315 +0.5 1.0 hypothetical protein compare
PS417_19975 +0.5 1.4 hypothetical protein compare
PS417_22850 +0.5 3.4 virulence factor family protein compare
PS417_04775 +0.5 1.9 short-chain dehydrogenase compare
PS417_09620 +0.5 3.6 lipopolysaccharide biosynthesis protein compare
PS417_18055 +0.5 1.0 general secretion pathway protein GspK compare
PS417_17440 +0.5 1.4 beta-lactamase compare
PS417_18130 +0.5 1.9 ABC transporter substrate-binding protein compare
PS417_10985 +0.5 0.7 NADH:flavin oxidoreductase compare
PS417_03165 +0.5 1.6 hypothetical protein compare
PS417_25650 +0.5 2.5 anhydro-N-acetylmuramic acid kinase compare
PS417_27290 +0.5 1.4 hypothetical protein compare
PS417_09635 +0.5 2.6 mannose-1-phosphate guanylyltransferase compare
PS417_23045 +0.5 1.8 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_26265 +0.5 1.4 hypothetical protein compare
PS417_17470 +0.5 0.9 LuxR family transcriptional regulator compare
PS417_25705 +0.5 1.4 lipoate--protein ligase compare
PS417_18495 +0.5 1.1 hypothetical protein compare
PS417_10055 +0.5 1.3 hypothetical protein compare
PS417_09585 +0.5 2.3 acetyltransferase compare
PS417_00585 +0.5 1.8 CoA-transferase compare
PS417_03415 +0.5 3.1 isomerase compare
PS417_22705 +0.5 1.6 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_23475 +0.5 1.1 hypothetical protein compare
PS417_11025 +0.5 2.2 sugar ABC transporter substrate-binding protein compare
PS417_14540 +0.5 1.0 cytochrome C oxidase subunit III compare
PS417_15400 +0.5 0.9 hypothetical protein compare
PS417_02990 +0.5 1.9 hypothetical protein compare
PS417_12705 +0.5 2.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) compare
PS417_12730 +0.5 1.3 glycosyltransferase compare
PS417_04220 +0.5 1.0 4-carboxymuconolactone decarboxylase compare
PS417_17305 +0.5 0.9 hypothetical protein compare
PS417_08740 +0.5 1.0 ribose-phosphate pyrophosphokinase compare
PS417_18690 +0.5 1.1 aromatic amino acid aminotransferase compare
PS417_11860 +0.5 1.5 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
PS417_17160 +0.5 1.4 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_11400 +0.5 0.8 phosphoglycerate mutase compare
PS417_03935 +0.5 1.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_19960 +0.4 1.5 membrane protein compare
PS417_13050 +0.4 1.4 N-acetylglucosamine-6-sulfatase compare
PS417_19190 +0.4 1.2 BolA family transcriptional regulator compare
PS417_27505 +0.4 2.9 transcriptional regulator compare
PS417_04170 +0.4 1.6 stringent starvation protein A compare
PS417_14810 +0.4 1.6 Fosmidomycin resistance protein compare
PS417_08310 +0.4 1.8 alpha/beta hydrolase compare
PS417_05610 +0.4 1.8 bacterioferritin compare
PS417_04305 +0.4 0.7 aspartate ammonia-lyase compare
PS417_06150 +0.4 1.9 SAM-dependent methlyltransferase compare
PS417_21270 +0.4 0.7 translation initiation factor 2 compare
PS417_26770 +0.4 1.6 tRNA (guanine-N7)-methyltransferase compare
PS417_19650 +0.4 1.3 chemotaxis protein CheW compare
PS417_04500 +0.4 0.9 hypothetical protein compare
PS417_17740 +0.4 2.2 fatty acid hydroxylase compare
PS417_06145 +0.4 0.7 hypothetical protein compare
PS417_08335 +0.4 0.8 hypothetical protein compare
PS417_10860 +0.4 1.8 flagellar basal body rod protein FlgG compare
PS417_07630 +0.4 2.3 hypothetical protein compare
PS417_16120 +0.4 2.2 transcriptional regulator compare
PS417_20600 +0.4 2.6 hypothetical protein compare
PS417_13785 +0.4 0.9 hypothetical protein compare
PS417_06900 +0.4 2.3 hypothetical protein compare
PS417_20240 +0.4 1.7 hypothetical protein compare
PS417_01060 +0.4 2.1 ABC transporter permease compare
PS417_23150 +0.4 1.6 Cro/Cl family transcriptional regulator compare
PS417_05850 +0.4 2.8 LysR family transcriptional regulator compare
PS417_19720 +0.4 0.8 DNA-binding protein compare
PS417_13300 +0.4 1.2 short-chain dehydrogenase compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source D-Glucose-6-Phosphate sodium salt in Pseudomonas simiae WCS417

For carbon source D-Glucose-6-Phosphate sodium salt across organisms