Experiment set2IT052 for Burkholderia phytofirmans PsJN

Compare to:

LB with Cephalothin sodium salt 2 mg/ml

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -7.9 -4.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15075 -4.7 -3.3 dihydrokaempferol 4-reductase compare
BPHYT_RS01625 -4.4 -5.5 chemotaxis protein CheY compare
BPHYT_RS01485 -4.3 -1.5 histidine kinase compare
BPHYT_RS14855 -3.2 -3.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14845 -3.1 -4.1 cysteine synthase compare
BPHYT_RS16175 -2.9 -3.6 hemolysin D compare
BPHYT_RS04290 -2.6 -3.1 glycosyl transferase family 2 compare
BPHYT_RS34810 -2.6 -5.7 RND transporter compare
BPHYT_RS02865 -2.6 -4.5 hypothetical protein compare
BPHYT_RS23840 -2.5 -5.3 methyltransferase compare
BPHYT_RS34805 -2.4 -10.3 ABC transporter compare
BPHYT_RS08565 -2.4 -2.0 dihydroorotate dehydrogenase compare
BPHYT_RS01620 -2.3 -8.6 sensor histidine kinase compare
BPHYT_RS16710 -2.1 -2.0 LysR family transcriptional regulator compare
BPHYT_RS09385 -1.9 -1.4 FAD-dependent oxidoreductase compare
BPHYT_RS11215 -1.9 -7.7 ribose ABC transporter ATPase compare
BPHYT_RS13390 -1.8 -1.5 IclR family transcriptional regulator compare
BPHYT_RS34780 -1.8 -4.6 phytoene synthase compare
BPHYT_RS18340 -1.8 -1.8 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS02860 -1.8 -1.6 membrane protein compare
BPHYT_RS03090 -1.7 -1.9 hypothetical protein compare
BPHYT_RS34815 -1.7 -2.5 ABC transporter compare
BPHYT_RS02285 -1.7 -4.5 cell division protein compare
BPHYT_RS29520 -1.6 -1.2 hypothetical protein compare
BPHYT_RS19085 -1.6 -6.9 flagellin compare
BPHYT_RS12615 -1.6 -1.8 dihydrodipicolinate synthase compare
BPHYT_RS08850 -1.5 -2.1 transcriptional regulator compare
BPHYT_RS17240 -1.5 -1.5 cell division protein FtsW compare
BPHYT_RS00690 -1.5 -1.4 transcriptional regulator compare
BPHYT_RS06530 -1.5 -1.4 membrane protein compare
BPHYT_RS22360 -1.4 -2.6 response regulator receiver compare
BPHYT_RS09650 -1.4 -2.1 hypothetical protein compare
BPHYT_RS06610 -1.4 -2.3 triosephosphate isomerase compare
BPHYT_RS12590 -1.4 -1.9 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS09620 -1.4 -2.5 aminodeoxychorismate lyase compare
BPHYT_RS16215 -1.3 -3.6 sensor histidine kinase compare
BPHYT_RS07705 -1.3 -1.8 arginine succinyltransferase compare
BPHYT_RS01585 -1.3 -6.1 major facilitator superfamily protein compare
BPHYT_RS28660 -1.3 -1.5 polyvinylalcohol dehydrogenase compare
BPHYT_RS20185 -1.3 -1.5 sugar transferase compare
BPHYT_RS21905 -1.3 -1.3 IclR family transcriptional regulator compare
BPHYT_RS02135 -1.3 -2.4 glyoxylate reductase compare
BPHYT_RS20165 -1.2 -3.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS09480 -1.2 -1.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS29085 -1.2 -1.8 LysR family transcriptional regulator compare
BPHYT_RS10135 -1.2 -1.2 hypothetical protein compare
BPHYT_RS16840 -1.2 -2.2 transketolase compare
BPHYT_RS13610 -1.1 -3.7 MerR family transcriptional regulator compare
BPHYT_RS15710 -1.1 -1.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS05290 -1.1 -1.4 hypothetical protein compare
BPHYT_RS11400 -1.1 -1.7 hypothetical protein compare
BPHYT_RS05320 -1.1 -1.5 beta-lactamase compare
BPHYT_RS02610 -1.1 -4.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS12670 -1.1 -2.2 cell division protein FtsB compare
BPHYT_RS03400 -1.1 -1.3 ATP-dependent DNA helicase RecG compare
BPHYT_RS04335 -1.1 -1.4 membrane protein compare
BPHYT_RS08235 -1.1 -1.0 nucleoprotein, Hfg, host factor I compare
BPHYT_RS26510 -1.1 -1.8 transcriptional regulator compare
BPHYT_RS24500 -1.0 -1.6 histidine kinase compare
BPHYT_RS20095 -1.0 -1.1 transcriptional regulator compare
BPHYT_RS17265 -1.0 -1.2 cell division protein compare
BPHYT_RS05235 -1.0 -1.1 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS08825 -1.0 -1.1 tartronate semialdehyde reductase compare
BPHYT_RS12060 -1.0 -1.4 hypothetical protein compare
BPHYT_RS34545 -1.0 -1.7 transcriptional regulator compare
BPHYT_RS10915 -1.0 -2.6 radical SAM protein compare
BPHYT_RS34895 -1.0 -3.0 endonuclease compare
BPHYT_RS29750 -1.0 -3.2 phosphoenolpyruvate phosphomutase compare
BPHYT_RS33515 -1.0 -5.7 porin compare
BPHYT_RS29500 -1.0 -1.8 hypothetical protein compare
BPHYT_RS08765 -1.0 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS13130 -1.0 -1.5 metallophosphatase compare
BPHYT_RS29475 -1.0 -1.5 carbon-phosphorus lyase complex subunit PhnJ compare
BPHYT_RS18765 -1.0 -4.7 flagellar biosynthesis protein FliS compare
BPHYT_RS03280 -0.9 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS21350 -0.9 -1.4 ADP-glucose pyrophosphorylase compare
BPHYT_RS29945 -0.9 -2.1 histidine kinase compare
BPHYT_RS18610 -0.9 -3.6 lytic transglycosylase compare
BPHYT_RS18590 -0.9 -0.9 hypothetical protein compare
BPHYT_RS16815 -0.9 -1.5 ureidoglycolate hydrolase compare
BPHYT_RS25020 -0.9 -1.5 phospholipid-binding protein compare
BPHYT_RS11250 -0.9 -3.1 saccharopine dehydrogenase compare
BPHYT_RS11805 -0.9 -1.4 hypothetical protein compare
BPHYT_RS20665 -0.9 -0.8 LysR family transcriptional regulator compare
BPHYT_RS26435 -0.9 -1.3 hypothetical protein compare
BPHYT_RS20155 -0.9 -1.4 hypothetical protein compare
BPHYT_RS30485 -0.9 -1.1 ABC transporter ATP-binding protein compare
BPHYT_RS06535 -0.9 -2.5 membrane protein compare
BPHYT_RS34605 -0.9 -1.6 transcriptional regulator compare
BPHYT_RS17905 -0.9 -1.9 fimbrial assembly family protein compare
BPHYT_RS05905 -0.9 -1.0 hypothetical protein compare
BPHYT_RS01965 -0.9 -1.4 tRNA-Ala compare
BPHYT_RS20680 -0.9 -2.8 LacI family transcriptional regulator compare
BPHYT_RS29720 -0.8 -1.0 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS09515 -0.8 -2.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS26955 -0.8 -0.7 succinylglutamate desuccinylase compare
BPHYT_RS06175 -0.8 -2.9 LPS biosynthesis compare
BPHYT_RS15320 -0.8 -1.2 hypothetical protein compare
BPHYT_RS05040 -0.8 -2.7 sugar ABC transporter ATPase compare
BPHYT_RS27720 -0.8 -1.1 hypothetical protein compare
BPHYT_RS22930 -0.8 -1.3 type II secretion system protein compare
BPHYT_RS15615 -0.8 -1.9 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS05335 -0.8 -1.5 AraC family transcriptional regulator compare
BPHYT_RS20380 -0.8 -1.4 LysR family transcriptional regulator compare
BPHYT_RS28930 -0.8 -0.8 chromosome partitioning protein ParA compare
BPHYT_RS04095 -0.8 -0.9 SAM-dependent methyltransferase PhcB compare
BPHYT_RS08960 -0.8 -1.2 threonine synthase compare
BPHYT_RS29745 -0.8 -1.8 phosphonopyruvate decarboxylase compare
BPHYT_RS02725 -0.8 -3.1 GntR family transcriptional regulator compare
BPHYT_RS23740 -0.8 -4.2 AraC family transcriptional regulator compare
BPHYT_RS22030 -0.8 -2.0 peptide ABC transporter ATP-binding protein compare
BPHYT_RS05705 -0.8 -0.8 hypothetical protein compare
BPHYT_RS07600 -0.8 -2.6 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS33045 -0.8 -1.4 response regulator receiver protein compare
BPHYT_RS28065 -0.8 -0.8 hypothetical protein compare
BPHYT_RS08525 -0.8 -0.9 SAM-dependent methyltransferase compare
BPHYT_RS03900 -0.8 -0.7 phospholipid-binding protein compare
BPHYT_RS11480 -0.8 -2.1 heme ABC transporter ATP-binding protein compare
BPHYT_RS03645 -0.8 -1.4 tRNA dimethylallyltransferase compare
BPHYT_RS16245 -0.8 -3.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS26355 -0.7 -1.1 hypothetical protein compare
BPHYT_RS09000 -0.7 -0.9 competence protein ComE compare
BPHYT_RS11210 -0.7 -1.6 ABC transporter permease compare
BPHYT_RS25065 -0.7 -1.1 glycine/betaine ABC transporter ATPase compare
BPHYT_RS27370 -0.7 -1.4 CoA transferase compare
BPHYT_RS11635 -0.7 -0.7 RNA polymerase subunit sigma-24 compare
BPHYT_RS09890 -0.7 -2.4 choline dehydrogenase compare
BPHYT_RS22355 -0.7 -1.2 HAD family hydrolase compare
BPHYT_RS31400 -0.7 -0.9 methyl-accepting chemotaxis protein compare
BPHYT_RS32470 -0.7 -1.1 membrane protein compare
BPHYT_RS33690 -0.7 -1.2 molybdate ABC transporter permease compare
BPHYT_RS15620 -0.7 -1.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS09565 -0.7 -1.1 acetyl-CoA acetyltransferase compare
BPHYT_RS03190 -0.7 -2.1 FmdB family transcriptional regulator compare
BPHYT_RS23875 -0.7 -0.8 sugar ABC transporter ATP-binding protein compare
BPHYT_RS02190 -0.7 -2.9 hypothetical protein compare
BPHYT_RS03480 -0.7 -1.9 ferritin compare
BPHYT_RS16350 -0.7 -3.2 hypothetical protein compare
BPHYT_RS07605 -0.7 -2.3 hypothetical protein compare
BPHYT_RS34560 -0.7 -2.1 hypothetical protein compare
BPHYT_RS21555 -0.7 -1.6 beta alanine--pyruvate aminotransferase compare
BPHYT_RS07515 -0.7 -1.0 photosystem reaction center subunit H compare
BPHYT_RS17640 -0.7 -1.8 2-alkenal reductase compare
BPHYT_RS02005 -0.7 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS21335 -0.7 -1.4 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS01425 -0.7 -2.9 3-phosphoglycerate dehydrogenase compare
BPHYT_RS32525 -0.7 -1.1 hypothetical protein compare
BPHYT_RS23280 -0.7 -1.7 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS06190 -0.7 -1.9 heptosyltransferase compare
BPHYT_RS29620 -0.7 -0.6 hypothetical protein compare
BPHYT_RS08710 -0.7 -3.6 hypothetical protein compare
BPHYT_RS31680 -0.7 -1.5 dehydrogenase compare
BPHYT_RS33990 -0.7 -0.6 ATPase compare
BPHYT_RS00340 -0.7 -1.9 hypothetical protein compare
BPHYT_RS05525 -0.7 -2.2 sensor histidine kinase compare
BPHYT_RS29710 -0.7 -1.6 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS00055 -0.7 -1.6 hypothetical protein compare
BPHYT_RS11220 -0.6 -1.2 LacI family transcriptional regulator compare
BPHYT_RS29695 -0.6 -1.3 hypothetical protein compare
BPHYT_RS36245 -0.6 -1.4 hypothetical protein compare
BPHYT_RS16255 -0.6 -1.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS23605 -0.6 -1.9 hypothetical protein compare
BPHYT_RS09870 -0.6 -2.2 membrane protein compare
BPHYT_RS21620 -0.6 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS07050 -0.6 -1.3 membrane protein compare
BPHYT_RS26390 -0.6 -0.7 antibiotic resistance protein compare
BPHYT_RS16445 -0.6 -1.0 RNA helicase compare
BPHYT_RS26310 -0.6 -1.5 ribonuclease R compare
BPHYT_RS08340 -0.6 -0.8 chemotaxis protein CheY compare
BPHYT_RS33610 -0.6 -0.7 DNA polymerase I compare
BPHYT_RS18280 -0.6 -2.8 TetR family transcriptional regulator compare
BPHYT_RS10895 -0.6 -2.0 transcriptional regulator compare
BPHYT_RS07720 -0.6 -3.0 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) compare
BPHYT_RS28910 -0.6 -1.3 diguanylate phosphodiesterase compare
BPHYT_RS14245 -0.6 -0.9 membrane protein compare
BPHYT_RS07400 -0.6 -1.6 hypothetical protein compare
BPHYT_RS30450 -0.6 -0.5 ABC transporter permease compare
BPHYT_RS25875 -0.6 -0.8 type III secretion protein compare
BPHYT_RS07750 -0.6 -3.8 histidine kinase compare
BPHYT_RS29740 -0.6 -2.0 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS10945 -0.6 -1.1 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS33695 -0.6 -1.6 molybdenum ABC transporter ATPase compare
BPHYT_RS11360 -0.6 -1.1 hypothetical protein compare
BPHYT_RS14550 -0.6 -0.7 tRNA-Asn compare
BPHYT_RS25540 -0.6 -1.9 phosphohydrolase compare
BPHYT_RS30365 -0.6 -0.6 beta-lactamase compare
BPHYT_RS11900 -0.6 -1.5 LysR family transcriptional regulator compare
BPHYT_RS20505 -0.6 -0.8 carboxymethylenebutenolidase compare
BPHYT_RS30055 -0.6 -0.9 hypothetical protein compare
BPHYT_RS02185 -0.6 -2.5 hypothetical protein compare
BPHYT_RS18515 -0.6 -1.6 hypothetical protein compare
BPHYT_RS07565 -0.6 -2.6 urocanate hydratase compare
BPHYT_RS10925 -0.6 -1.4 aldehyde dehydrogenase compare
BPHYT_RS20570 -0.6 -1.3 heptosyltransferase compare
BPHYT_RS07320 -0.6 -1.0 dihydrodipicolinate synthetase compare
BPHYT_RS02590 -0.6 -2.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS10965 -0.6 -1.4 hypothetical protein compare
BPHYT_RS07080 -0.6 -1.5 glutathione S-transferase compare
BPHYT_RS14380 -0.6 -2.4 elongation factor 4 compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cephalothin sodium salt in Burkholderia phytofirmans PsJN

For stress Cephalothin sodium salt across organisms