Experiment set2IT049 for Burkholderia phytofirmans PsJN

Compare to:

LB with Dimethyl Sulfoxide 6 vol%

200 most important genes:

  gene name fitness t score description  
BPHYT_RS08960 -3.0 -2.8 threonine synthase compare
BPHYT_RS23840 -2.8 -5.0 methyltransferase compare
BPHYT_RS12990 -2.7 -3.3 iron transporter compare
BPHYT_RS06400 -2.6 -5.7 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS03640 -2.4 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS33920 -2.4 -9.1 type II citrate synthase compare
BPHYT_RS17095 -2.3 -3.8 proline--tRNA ligase compare
BPHYT_RS16245 -2.3 -5.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS02865 -2.2 -5.3 hypothetical protein compare
BPHYT_RS16710 -2.1 -2.2 LysR family transcriptional regulator compare
BPHYT_RS06610 -2.0 -3.2 triosephosphate isomerase compare
BPHYT_RS17920 -2.0 -2.1 protein CyaY compare
BPHYT_RS18340 -2.0 -2.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS14855 -1.9 -3.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06530 -1.9 -2.7 membrane protein compare
BPHYT_RS09515 -1.9 -6.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33840 -1.8 -8.5 amidophosphoribosyltransferase compare
BPHYT_RS08850 -1.8 -1.7 transcriptional regulator compare
BPHYT_RS15620 -1.8 -4.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06405 -1.7 -8.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS15710 -1.7 -2.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS33580 -1.6 -4.1 geranyltranstransferase compare
BPHYT_RS15615 -1.6 -3.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS14400 -1.6 -3.2 anti-sigma factor compare
BPHYT_RS16255 -1.6 -4.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS02965 -1.6 -3.9 membrane protein compare
BPHYT_RS13645 -1.5 -11.5 threonine--tRNA ligase compare
BPHYT_RS06600 -1.5 -2.3 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS03480 -1.5 -4.6 ferritin compare
BPHYT_RS04965 -1.5 -8.2 ATP-binding protein compare
BPHYT_RS01625 -1.5 -4.2 chemotaxis protein CheY compare
BPHYT_RS16880 -1.5 -1.0 malic enzyme compare
BPHYT_RS09500 -1.5 -4.9 glucose-6-phosphate isomerase compare
BPHYT_RS17100 -1.5 -6.0 RNA pyrophosphohydrolase compare
BPHYT_RS33610 -1.5 -1.7 DNA polymerase I compare
BPHYT_RS16840 -1.4 -3.6 transketolase compare
BPHYT_RS06535 -1.4 -3.1 membrane protein compare
BPHYT_RS04370 -1.4 -2.2 glycosyl transferase compare
BPHYT_RS12985 -1.4 -2.3 amino acid acetyltransferase compare
BPHYT_RS16270 -1.4 -5.0 phosphoglycerate kinase compare
BPHYT_RS04290 -1.3 -2.2 glycosyl transferase family 2 compare
BPHYT_RS07760 -1.3 -1.9 diguanylate phosphodiesterase compare
BPHYT_RS06190 -1.3 -4.2 heptosyltransferase compare
BPHYT_RS06710 -1.3 -1.6 hypothetical protein compare
BPHYT_RS13605 -1.3 -1.1 tRNA-Pro compare
BPHYT_RS06075 -1.3 -6.0 hypothetical protein compare
BPHYT_RS17945 -1.2 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS06685 -1.2 -2.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS09330 -1.2 -9.0 phytoene synthase compare
BPHYT_RS15075 -1.2 -2.1 dihydrokaempferol 4-reductase compare
BPHYT_RS20235 -1.2 -4.5 iron ABC transporter compare
BPHYT_RS16555 -1.2 -5.6 cation transporter compare
BPHYT_RS14275 -1.2 -2.1 hypothetical protein compare
BPHYT_RS28955 -1.2 -2.6 hypothetical protein compare
BPHYT_RS16175 -1.2 -2.4 hemolysin D compare
BPHYT_RS04625 -1.2 -2.2 urea ABC transporter ATP-binding protein compare
BPHYT_RS08995 -1.2 -1.8 hypothetical protein compare
BPHYT_RS34780 -1.2 -4.4 phytoene synthase compare
BPHYT_RS06175 -1.1 -3.9 LPS biosynthesis compare
BPHYT_RS09780 -1.1 -1.9 polysaccharide biosynthesis protein compare
BPHYT_RS22455 -1.1 -1.2 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS08565 -1.1 -1.4 dihydroorotate dehydrogenase compare
BPHYT_RS35310 -1.1 -2.1 GCN5 family N-acetyltransferase compare
BPHYT_RS09620 -1.1 -3.1 aminodeoxychorismate lyase compare
BPHYT_RS04955 -1.1 -2.3 methionyl-tRNA synthetase compare
BPHYT_RS05610 -1.1 -7.6 DNA-cytosine methyltransferase compare
BPHYT_RS02285 -1.1 -3.6 cell division protein compare
BPHYT_RS12465 -1.1 -2.3 inositol monophosphatase compare
BPHYT_RS33850 -1.0 -1.1 sporulation protein compare
BPHYT_RS29320 -1.0 -2.4 histidine kinase compare
BPHYT_RS02860 -1.0 -1.1 membrane protein compare
BPHYT_RS02135 -1.0 -1.9 glyoxylate reductase compare
BPHYT_RS06065 -1.0 -5.7 cytochrome C compare
BPHYT_RS02005 -1.0 -1.7 diguanylate phosphodiesterase compare
BPHYT_RS03400 -1.0 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS02525 -1.0 -6.3 membrane protein compare
BPHYT_RS07605 -1.0 -2.7 hypothetical protein compare
BPHYT_RS24745 -1.0 -2.6 transcriptional regulator compare
BPHYT_RS20245 -1.0 -5.5 iron ABC transporter substrate-binding protein compare
BPHYT_RS30055 -1.0 -1.9 hypothetical protein compare
BPHYT_RS11125 -1.0 -1.5 alkylhydroperoxidase compare
BPHYT_RS24500 -1.0 -1.8 histidine kinase compare
BPHYT_RS02650 -1.0 -1.5 membrane protein compare
BPHYT_RS16675 -1.0 -2.3 dihydroorotase compare
BPHYT_RS04385 -1.0 -2.8 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS16835 -1.0 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS29920 -1.0 -1.1 hypothetical protein compare
BPHYT_RS09480 -0.9 -1.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS18705 -0.9 -1.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS33045 -0.9 -1.6 response regulator receiver protein compare
BPHYT_RS06985 -0.9 -5.1 fumarate hydratase compare
BPHYT_RS06900 -0.9 -3.9 aspartate aminotransferase compare
BPHYT_RS01630 -0.9 -2.3 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS15415 -0.9 -7.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS16430 -0.9 -7.1 cytochrome C compare
BPHYT_RS28920 -0.9 -1.5 cellulose synthase compare
BPHYT_RS02640 -0.9 -7.1 cytochrome C oxidase compare
BPHYT_RS17530 -0.9 -4.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS00770 -0.9 -1.1 conjugal transfer protein TraC compare
BPHYT_RS10540 -0.9 -1.5 secretion protein compare
BPHYT_RS21665 -0.9 -1.5 hypothetical protein compare
BPHYT_RS12590 -0.9 -1.7 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS03725 -0.9 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS06325 -0.9 -2.8 ATPase compare
BPHYT_RS29945 -0.9 -2.0 histidine kinase compare
BPHYT_RS04255 -0.9 -2.2 diadenosine tetraphosphatase compare
BPHYT_RS29620 -0.9 -0.9 hypothetical protein compare
BPHYT_RS10740 -0.9 -1.4 LuxR family transcriptional regulator compare
BPHYT_RS28705 -0.9 -1.3 IclR family transcriptional regulator compare
BPHYT_RS04335 -0.9 -1.3 membrane protein compare
BPHYT_RS26025 -0.9 -0.9 hypothetical protein compare
BPHYT_RS14735 -0.9 -1.1 hypothetical protein compare
BPHYT_RS11310 -0.9 -1.2 LysR family transcriptional regulator compare
BPHYT_RS30490 -0.9 -0.7 2-haloalkanoic acid dehalogenase compare
BPHYT_RS14880 -0.8 -1.5 integration host factor subunit beta compare
BPHYT_RS06550 -0.8 -2.8 acetolactate synthase compare
BPHYT_RS31950 -0.8 -2.0 short-chain dehydrogenase compare
BPHYT_RS02590 -0.8 -4.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS18590 -0.8 -0.8 hypothetical protein compare
BPHYT_RS02690 -0.8 -5.0 protoheme IX farnesyltransferase compare
BPHYT_RS12265 -0.8 -1.5 alanine acetyltransferase compare
BPHYT_RS12725 -0.8 -6.2 regulator compare
BPHYT_RS14395 -0.8 -2.9 sugar dehydratase compare
BPHYT_RS24315 -0.8 -1.3 phosphoribosyltransferase compare
BPHYT_RS30665 -0.8 -1.3 peroxidase compare
BPHYT_RS22930 -0.8 -1.3 type II secretion system protein compare
BPHYT_RS16435 -0.8 -6.5 alcohol dehydrogenase compare
BPHYT_RS21700 -0.8 -2.0 phosphotransacetylase compare
BPHYT_RS19305 -0.8 -4.5 ATP-dependent DNA helicase Rep compare
BPHYT_RS02665 -0.8 -5.3 MFS transporter compare
BPHYT_RS01455 -0.8 -0.7 peptide deformylase compare
BPHYT_RS34810 -0.8 -3.2 RND transporter compare
BPHYT_RS19680 -0.8 -6.1 glutamate--cysteine ligase compare
BPHYT_RS18635 -0.8 -1.2 LamB/YcsF family protein compare
BPHYT_RS32260 -0.8 -1.4 hypothetical protein compare
BPHYT_RS29805 -0.8 -2.3 lysine transporter LysE compare
BPHYT_RS12845 -0.8 -6.0 ATPase compare
BPHYT_RS14180 -0.8 -1.6 membrane protein compare
BPHYT_RS07405 -0.8 -2.3 UDP-glucose 4-epimerase compare
BPHYT_RS18710 -0.8 -1.8 membrane protein compare
BPHYT_RS06375 -0.8 -2.7 ribonuclease compare
BPHYT_RS09265 -0.8 -2.1 chemotaxis protein CheY compare
BPHYT_RS17525 -0.8 -2.3 glutaredoxin compare
BPHYT_RS12615 -0.8 -1.2 dihydrodipicolinate synthase compare
BPHYT_RS32815 -0.8 -1.9 sugar ABC transporter compare
BPHYT_RS06350 -0.8 -1.8 chemotaxis protein CheY compare
BPHYT_RS20240 -0.8 -3.0 iron reductase compare
BPHYT_RS02685 -0.7 -4.4 cytochrome C oxidase subunit I compare
BPHYT_RS11960 -0.7 -1.0 MarR family transcriptional regulator compare
BPHYT_RS03655 -0.7 -1.1 membrane protein compare
BPHYT_RS17520 -0.7 -2.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS33990 -0.7 -0.7 ATPase compare
BPHYT_RS14865 -0.7 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS29750 -0.7 -2.8 phosphoenolpyruvate phosphomutase compare
BPHYT_RS34805 -0.7 -4.1 ABC transporter compare
BPHYT_RS28075 -0.7 -0.8 cytochrome B561 compare
BPHYT_RS34410 -0.7 -1.0 hypothetical protein compare
BPHYT_RS21335 -0.7 -1.5 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS21025 -0.7 -0.9 cation-binding protein compare
BPHYT_RS23975 -0.7 -2.5 peroxidase compare
BPHYT_RS12055 -0.7 -5.9 phosphoenolpyruvate synthase compare
BPHYT_RS15865 -0.7 -1.9 exodeoxyribonuclease VII large subunit compare
BPHYT_RS04340 -0.7 -2.2 hypothetical protein compare
BPHYT_RS23475 -0.7 -0.8 luciferase compare
BPHYT_RS34490 -0.7 -0.8 hypothetical protein compare
BPHYT_RS28965 -0.7 -1.5 hypothetical protein compare
BPHYT_RS26135 -0.7 -1.3 ABC transporter permease compare
BPHYT_RS06310 -0.7 -3.1 heme oxygenase compare
BPHYT_RS22355 -0.7 -1.5 HAD family hydrolase compare
BPHYT_RS24350 -0.7 -1.0 hypothetical protein compare
BPHYT_RS16340 -0.7 -4.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS34275 -0.7 -3.1 peptide chain release factor 3 compare
BPHYT_RS27920 -0.7 -1.0 tricarballylate utilization protein B compare
BPHYT_RS11765 -0.7 -0.8 polyamine ABC transporter permease compare
BPHYT_RS00325 -0.7 -1.3 hypothetical protein compare
BPHYT_RS01620 -0.7 -4.0 sensor histidine kinase compare
BPHYT_RS36055 -0.7 -1.8 hypothetical protein compare
BPHYT_RS03190 -0.7 -2.1 FmdB family transcriptional regulator compare
BPHYT_RS03475 -0.7 -3.9 catalase compare
BPHYT_RS08340 -0.7 -1.0 chemotaxis protein CheY compare
BPHYT_RS35955 -0.7 -0.9 hypothetical protein compare
BPHYT_RS06070 -0.7 -4.0 cytochrome C compare
BPHYT_RS28715 -0.7 -1.9 cupin compare
BPHYT_RS30065 -0.7 -1.5 shikimate dehydrogenase compare
BPHYT_RS09930 -0.7 -1.6 LysR family transcriptional regulator compare
BPHYT_RS05845 -0.7 -1.8 hypothetical protein compare
BPHYT_RS31150 -0.7 -1.3 transcriptional regulator compare
BPHYT_RS17445 -0.7 -2.4 GTP-binding protein YchF compare
BPHYT_RS06160 -0.7 -2.8 glutamyl-Q tRNA(Asp) ligase compare
BPHYT_RS30845 -0.7 -1.7 polyketide cyclase compare
BPHYT_RS09445 -0.7 -2.0 trigger factor compare
BPHYT_RS09565 -0.7 -1.1 acetyl-CoA acetyltransferase compare
BPHYT_RS27155 -0.7 -1.2 peroxiredoxin compare
BPHYT_RS29110 -0.7 -1.6 DNA-directed DNA polymerase compare
BPHYT_RS20990 -0.6 -2.5 phasin compare
BPHYT_RS11705 -0.6 -0.8 hypothetical protein compare
BPHYT_RS24655 -0.6 -1.8 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS00455 -0.6 -1.8 DNA topoisomerase III in PFGI-1-like cluster compare
BPHYT_RS28605 -0.6 -1.6 NADPH-dependent FMN reductase compare
BPHYT_RS05335 -0.6 -1.6 AraC family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in stress experiments

For stress Dimethyl Sulfoxide across organisms