Experiment set2IT020 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
BT0528 -6.1 -3.9 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT2076 -6.0 -5.8 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT0530 -5.6 -3.8 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT3757 -5.5 -3.8 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT3733 -5.5 -5.4 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT3761 -5.5 -3.8 N-succinylglutamate synthase (from data) compare
BT1857 -5.5 -3.8 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT1374 -5.5 -6.5 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT3758 -5.4 -3.5 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT2403 -5.4 -3.7 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT3395 -5.3 -5.2 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT2836 -5.3 -9.6 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT3759 -5.3 -6.3 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1377 -5.3 -4.6 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT3719 -5.2 -3.6 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT1379 -5.2 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT2415 -5.2 -3.6 aspartate aminotransferase (NCBI ptt file) compare
BT0700 -5.2 -5.0 GTP pyrophosphokinase (NCBI ptt file) compare
BT1153 -5.2 -3.6 phosphoserine aminotransferase (NCBI ptt file) compare
BT2078 -5.1 -8.6 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT2803 -5.1 -9.1 ribokinase (EC 2.7.1.15) (from data) conserved
BT0200 -5.1 -3.5 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT2077 -5.1 -3.5 acetolactate synthase large subunit (NCBI ptt file) compare
BT0532 -5.1 -4.9 anthranilate synthase component I (NCBI ptt file) compare
BT0892 -5.0 -1.9 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT3760 -5.0 -3.5 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT3253 -5.0 -3.0 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT1152 -5.0 -3.5 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT1733 -5.0 -5.9 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT2837 -4.9 -10.0 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT1859 -4.9 -3.4 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT3933 -4.9 -7.8 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1843 -4.9 -7.4 adenylosuccinate synthetase (NCBI ptt file) compare
BT1861 -4.8 -4.7 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT1607 -4.8 -3.3 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT3718 -4.8 -4.7 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT2809 -4.8 -7.9 D-ribose transporter (from data) compare
BT2074 -4.7 -9.6 ketol-acid reductoisomerase (NCBI ptt file) compare
BT2402 -4.7 -7.9 homoserine phosphotransferase HomK (from data) compare
BT0527 -4.7 -4.6 tryptophan synthase alpha chain (NCBI ptt file) compare
BT3918 -4.7 -3.4 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT2401 -4.7 -6.4 threonine synthase (NCBI ptt file) compare
BT3193 -4.7 -9.5 putative coenzyme A transferase (NCBI ptt file) compare
BT1608 -4.6 -7.1 capsule biosynthesis protein capA (NCBI ptt file) compare
BT0529 -4.6 -3.2 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT4211 -4.6 -3.2 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT3184 -4.6 -10.2 L-aspartate oxidase (NCBI ptt file) compare
BT1970 -4.6 -5.4 glutamate dehydrogenase (NCBI ptt file) compare
BT2161 -4.5 -1.7 50S ribosomal protein L9 (NCBI ptt file) compare
BT3320 -4.5 -6.2 dihydrodipicolinate reductase (NCBI ptt file) compare
BT0891 -4.5 -2.8 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0203 -4.5 -3.1 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT0201 -4.5 -3.1 histidinol dehydrogenase (NCBI ptt file) compare
BT1858 -4.5 -8.1 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT0202 -4.5 -7.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3164 -4.4 -5.2 quinolinate synthetase A (NCBI ptt file) compare
BT1860 -4.4 -4.3 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT2804 -4.4 -6.7 ribokinase (EC 2.7.1.15) (from data) conserved
BT2080 -4.4 -3.0 L-cysteine desulfidase cdsB (from data) compare
BT3549 -4.3 -6.6 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT2802 -4.3 -15.9 conserved protein required for D-ribose utilization (from data) compare
BT2129 -4.3 -8.7 aspartate--ammonia ligase (NCBI ptt file) compare
BT0771 -4.3 -5.0 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT3936 -4.2 -3.3 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT4191 -4.2 -13.3 hypothetical protein (NCBI ptt file) compare
BT1476 -4.2 -5.6 aspartate aminotransferase (NCBI ptt file) compare
BT2389 -4.1 -2.8 putative transport protein (NCBI ptt file) compare
BT1689 -4.1 -8.7 oxaloacetate decarboxylase beta chain (NCBI ptt file) compare
BT1747 -4.0 -2.8 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT3935 -4.0 -6.1 aminotransferase (NCBI ptt file) compare
BT1222 -3.9 -2.4 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT4649 -3.9 -1.7 hypothetical protein (NCBI ptt file) compare
BT1380 -3.9 -2.7 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT0533 -3.8 -6.7 tryptophan synthase beta chain (NCBI ptt file) compare
BT3891 -3.8 -1.2 hypothetical protein (NCBI ptt file) compare
BT3387 -3.8 -1.8 putative polysaccharide deacetylase (NCBI ptt file) compare
BT3866 -3.8 -11.1 ammonium-dependent carbamoyl phosphate synthetase CarB2 (EC 6.3.4.16) (from data) compare
BT0738 -3.7 -5.6 serine hydroxymethyltransferase (NCBI ptt file) compare
BT0876 -3.6 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT3361 -3.5 -9.1 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT2741 -3.5 -2.2 sigma-54 modulation protein (NCBI ptt file) compare
BT1641 -3.5 -1.9 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT3717 -3.5 -5.9 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1058 -3.3 -11.4 two-component system sensor histidine kinase (NCBI ptt file) compare
BT1746 -3.3 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1220 -3.3 -3.1 6-phosphogluconolactonase (NCBI ptt file) compare
BT2760 -3.2 -4.6 conserved hypothetical protein (NCBI ptt file) compare
BT1442 -3.2 -8.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT1446 -3.2 -9.1 dethiobiotin synthetase (NCBI ptt file) compare
BT3806 -3.2 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1193 -3.2 -5.1 conserved hypothetical protein (NCBI ptt file) compare
BT1378 -3.2 -3.8 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT0531 -3.2 -3.3 anthranilate synthase component II (NCBI ptt file) compare
BT3554 -3.1 -4.0 conserved hypothetical protein (NCBI ptt file) compare
BT1381 -3.1 -7.6 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT3845 -3.1 -5.4 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
BT3770 -3.0 -2.9 transcriptional regulator (NCBI ptt file) compare
BT1956 -3.0 -8.1 putative cell surface protein (NCBI ptt file) compare
BT4551 -3.0 -4.3 putative GTPase, ThdF family (NCBI ptt file) compare
BT2153 -2.9 -2.8 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT2237 -2.9 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT1443 -2.9 -7.1 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT1445 -2.9 -6.2 putative biotin synthesis protein bioC (NCBI ptt file) compare
BT2046 -2.9 -1.8 putative cardiolipin synthetase (NCBI ptt file) compare
BT2931 -2.9 -2.4 hypothetical protein (NCBI ptt file) compare
BT1559 -2.8 -3.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3371 -2.8 -4.3 putative glycosyltransferase yibD (NCBI ptt file) compare
BT1729 -2.8 -8.8 peptide chain release factor 3 (RF-3) (NCBI ptt file) compare
BT4447 -2.8 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1613 -2.8 -9.6 conserved hypothetical protein (NCBI ptt file) compare
BT2787 -2.8 -13.4 GTP-binding elongation factor family protein TypA/BipA (NCBI ptt file) compare
BT1979 -2.7 -4.4 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT1984 -2.7 -2.6 transcriptional regulator (NCBI ptt file) compare
BT3355 -2.7 -1.9 putative auxin-regulated protein (NCBI ptt file) compare
BT1955 -2.7 -11.1 putative cell wall biogenesis protein (NCBI ptt file) compare
BT2272 -2.7 -6.1 conserved hypothetical protein (NCBI ptt file) compare
BT1844 -2.7 -5.0 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT2247 -2.7 -2.2 putative ryanodine receptor (NCBI ptt file) compare
BT4043 -2.6 -6.1 dimethyladenosine transferase (NCBI ptt file) compare
BT1221 -2.5 -5.1 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) compare
BT2088 -2.5 -2.0 hypothetical protein (NCBI ptt file) compare
BT3694 -2.5 -0.7 glycosyltransferase (NCBI ptt file) compare
BT0545 -2.5 -1.9 nitrogen regulatory protein P-II (NCBI ptt file) compare
BT4339 -2.5 -5.4 glutamine synthetase (NCBI ptt file) compare
BT4049 -2.4 -5.2 putative ArgK protein with ATPase and kinase domains (NCBI ptt file) compare
BT0927 -2.4 -2.6 two-component system sensor histidine kinase (NCBI ptt file) compare
BT4699 -2.4 -3.8 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT1125 -2.4 -2.0 hypothetical protein (NCBI ptt file) compare
BT3368 -2.4 -1.4 putative glycosyltransferase (NCBI ptt file) compare
BT2003 -2.4 -1.4 putative membrane peptidase (NCBI ptt file) compare
BT1336 -2.3 -4.4 putative translation initiation inhibitor (NCBI ptt file) compare
BT1444 -2.3 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT2418 -2.3 -5.1 hypothetical protein (NCBI ptt file) compare
BT4478 -2.3 -1.7 hypothetical protein (NCBI ptt file) compare
BT4723 -2.3 -4.6 putative anti-sigma factor (NCBI ptt file) compare
BT1972 -2.3 -8.4 phosphoenolpyruvate synthase/pyruvate phosphate dikinase (NCBI ptt file) compare
BT1958 -2.3 -2.2 hypothetical protein (NCBI ptt file) compare
BT0074 -2.3 -2.4 hypothetical protein (NCBI ptt file) compare
BT1293 -2.3 -9.5 alpha-glucan phosphorylase (NCBI ptt file) compare
BT3284 -2.2 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT4304 -2.2 -8.7 putative glycosyltransferase (NCBI ptt file) compare
BT4002 -2.2 -0.9 ATPase, ParA family (NCBI ptt file) compare
BT1953 -2.2 -7.8 putative TonB-linked outer membrane receptor (NCBI ptt file) compare
BT0063 -2.1 -2.1 hypothetical protein (NCBI ptt file) compare
BT3882 -2.1 -1.5 putative DNA binding protein (NCBI ptt file) compare
BT4219 -2.1 -3.1 hypothetical protein (NCBI ptt file) compare
BT3394 -2.1 -6.4 putative arginine decarboxylase (NCBI ptt file) compare
BT0239 -2.0 -5.4 hypothetical protein (NCBI ptt file) compare
BT1462 -2.0 -2.8 hypothetical protein (NCBI ptt file) compare
BT2781 -2.0 -3.4 putative mannose-1-phosphate guanylyltransferase (NCBI ptt file) compare
BT2732 -2.0 -4.7 hypothetical protein (NCBI ptt file) compare
BT1421 -2.0 -2.9 hypothetical protein (NCBI ptt file) compare
BT4258 -2.0 -5.6 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT4562 -1.9 -1.8 hypothetical protein (NCBI ptt file) compare
BT2091 -1.9 -5.0 methylmalonyl-CoA mutase small subunit (NCBI ptt file) compare
BT0774 -1.9 -3.0 conserved protein with a conserved patatin-like phospholipase domain (NCBI ptt file) compare
BT0223 -1.9 -2.3 two-component system response regulator (NCBI ptt file) compare
BT2841 -1.9 -1.1 pyruvate kinase (NCBI ptt file) compare
BT2417 -1.9 -1.0 conserved hypothetical protein (NCBI ptt file) compare
BT2034 -1.9 -3.3 two-component system response regulator (NCBI ptt file) compare
BT3510 -1.9 -1.5 hypothetical protein (NCBI ptt file) compare
BT3035 -1.9 -6.9 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT3260 -1.9 -1.8 DNA polymerase I (NCBI ptt file) compare
BT2742 -1.9 -0.5 integrase, site-specific recombinase (NCBI ptt file) compare
BT4098 -1.8 -1.8 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT0176 -1.8 -7.3 conserved hypothetical protein (NCBI ptt file) compare
BT1954 -1.8 -3.6 putative surface layer protein (NCBI ptt file) compare
BT4466 -1.8 -1.6 hypothetical protein (NCBI ptt file) compare
BT2090 -1.8 -6.2 methylmalonyl-CoA mutase large subunit (NCBI ptt file) compare
BT3372 -1.8 -5.5 glycosyltransferase (NCBI ptt file) compare
BT2494 -1.8 -3.5 ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT4330 -1.8 -6.4 xanthosine permease (NCBI ptt file) compare
BT4644 -1.8 -3.5 putative anti-sigma factor (NCBI ptt file) compare
BT2539 -1.8 -1.5 rubredoxin (NCBI ptt file) compare
BT3369 -1.7 -3.3 putative glycosyltransferase (NCBI ptt file) compare
BT3370 -1.7 -2.9 putative glycosyltransferase yibD (NCBI ptt file) compare
BT1375 -1.7 -5.2 aspartokinase (NCBI ptt file) compare
BT1130 -1.7 -1.6 hypothetical protein (NCBI ptt file) compare
BT3357 -1.7 -5.8 ribonuclease III (NCBI ptt file) compare
BT2075 -1.7 -3.1 acyl-ACP thioesterase (NCBI ptt file) compare
BT3762 -1.7 -3.0 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT1513 -1.7 -4.3 integrase (NCBI ptt file) compare
BT4386 -1.7 -1.8 hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file) compare
BT4329 -1.7 -4.4 conserved hypothetical protein with a conserved domain (NCBI ptt file) compare
BT0831 -1.7 -6.3 ATP-dependent RNA helicase (NCBI ptt file) compare
BT2321 -1.7 -2.2 putative integrase (NCBI ptt file) compare
BT1836 -1.7 -6.0 thiamine biosynthesis protein ThiH (NCBI ptt file) compare
BT3978 -1.7 -5.6 putative cardiolipin synthetase (NCBI ptt file) compare
BT4360 -1.7 -4.2 hypothetical protein (NCBI ptt file) compare
BT3629 -1.6 -3.6 hypothetical protein (NCBI ptt file) compare
BT1957 -1.6 -3.9 hypothetical protein (NCBI ptt file) compare
BT2798 -1.6 -7.8 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT4310 -1.6 -5.4 NADPH-dependent glutamate synthase small chain (NCBI ptt file) compare
BT1296 -1.6 -4.3 V-type ATP synthase subunit I (NCBI ptt file) compare
BT1515 -1.6 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT3268 -1.6 -2.8 glucose-inhibited division protein A (NCBI ptt file) compare
BT4103 -1.6 -3.8 putative Sec-independent protein translocase (NCBI ptt file) compare
BT1808 -1.6 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT2302 -1.6 -0.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2582 -1.6 -2.1 conserved hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Ribose in Bacteroides thetaiotaomicron VPI-5482

For carbon source D-Ribose across organisms