Experiment set2IT016 for Pseudomonas sp. RS175

Compare to:

sn-glycero-3-phosphocholine carbon source 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_04921 +1.3 2.7 hypothetical protein compare
PFR28_03533 +1.2 2.0 DNA-binding protein HU 1 compare
PFR28_01182 +1.1 3.0 hypothetical protein compare
PFR28_03106 +1.1 7.4 hypothetical protein compare
PFR28_02473 +1.0 6.9 Protein RarD compare
PFR28_02094 +1.0 1.9 Glycerol-3-phosphate regulon repressor compare
PFR28_00828 +1.0 8.5 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_04497 +0.9 6.9 HTH-type transcriptional regulator YjiE compare
PFR28_01809 +0.9 1.2 hypothetical protein compare
PFR28_02289 +0.9 1.6 HTH-type transcriptional repressor NicS compare
PFR28_01015 +0.9 2.6 '3'-5' exonuclease DinG' transl_table=11 compare
PFR28_04638 +0.9 6.1 Proton/glutamate-aspartate symporter compare
PFR28_03749 +0.9 2.2 Outer membrane protein assembly factor BamD compare
PFR28_03696 +0.9 5.7 hypothetical protein compare
PFR28_04418 +0.9 2.7 Exodeoxyribonuclease compare
PFR28_03079 +0.9 6.7 Sensor histidine kinase RcsC compare
PFR28_01042 +0.8 1.2 hypothetical protein compare
PFR28_00945 +0.8 1.6 hypothetical protein compare
PFR28_00095 +0.8 1.5 tRNA-Thr compare
PFR28_03631 +0.8 1.1 hypothetical protein compare
PFR28_00044 +0.7 2.3 hypothetical protein compare
PFR28_05110 +0.7 4.7 Motility protein A compare
PFR28_03077 +0.7 6.7 Vitamin B12 transporter BtuB compare
PFR28_04628 +0.7 2.1 Thiol:disulfide interchange protein DsbA compare
PFR28_03105 +0.7 5.9 hypothetical protein compare
PFR28_03688 +0.7 5.3 hypothetical protein compare
PFR28_00451 +0.7 1.9 hypothetical protein compare
PFR28_03687 +0.7 4.7 Intermembrane transport protein PqiA compare
PFR28_01981 +0.7 2.2 hypothetical protein compare
PFR28_01777 +0.7 1.3 putative trans-3-hydroxy-L-proline dehydratase compare
PFR28_00924 +0.7 2.7 hypothetical protein compare
PFR28_00766 +0.7 1.3 hypothetical protein compare
PFR28_00405 +0.7 1.4 hypothetical protein compare
PFR28_03686 +0.6 5.4 Intermembrane transport protein YebT compare
PFR28_03386 +0.6 1.8 Major cold shock protein CspA compare
PFR28_02930 +0.6 3.2 hypothetical protein compare
PFR28_01706 +0.6 1.4 hypothetical protein compare
PFR28_04473 +0.6 0.7 DNA-binding protein HU-beta compare
PFR28_01748 +0.6 1.0 hypothetical protein compare
PFR28_01315 +0.6 1.3 hypothetical protein compare
PFR28_04150 +0.6 1.6 hypothetical protein compare
PFR28_05200 +0.6 2.4 Cobalt-precorrin-5B C(1)-methyltransferase compare
PFR28_04678 +0.6 2.7 hypothetical protein compare
PFR28_04461 +0.6 1.3 hypothetical protein compare
PFR28_02252 +0.6 4.2 hypothetical protein compare
PFR28_02278 +0.6 3.7 hypothetical protein compare
PFR28_04160 +0.6 3.9 hypothetical protein compare
PFR28_01420 +0.6 2.2 hypothetical protein compare
PFR28_02809 +0.6 1.7 Glucose 1-dehydrogenase 1 compare
PFR28_02303 +0.6 1.6 hypothetical protein compare
PFR28_03536 +0.6 1.7 hypothetical protein compare
PFR28_02561 +0.6 2.0 RutC family protein YjgH compare
PFR28_00182 +0.6 3.3 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_04339 +0.6 1.6 Glc operon transcriptional activator compare
PFR28_01272 +0.6 2.4 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
PFR28_05111 +0.5 3.2 Motility protein B compare
PFR28_00876 +0.5 1.6 hypothetical protein compare
PFR28_03417 +0.5 1.1 hypothetical protein compare
PFR28_02427 +0.5 1.9 hypothetical protein compare
PFR28_04233 +0.5 2.5 hypothetical protein compare
PFR28_00555 +0.5 2.1 Inner membrane protein YbaN compare
PFR28_01444 +0.5 2.1 HTH-type transcriptional regulator DmlR compare
PFR28_03200 +0.5 2.8 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_01369 +0.5 3.9 Methionine synthase compare
PFR28_04458 +0.5 3.2 Protein hcp1 compare
PFR28_00594 +0.5 1.7 Gluconokinase compare
PFR28_03257 +0.5 3.0 hypothetical protein compare
PFR28_01189 +0.5 2.4 hypothetical protein compare
PFR28_01773 +0.5 0.6 hypothetical protein compare
PFR28_03203 +0.5 2.1 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_00787 +0.5 1.7 hypothetical protein compare
PFR28_00953 +0.5 2.9 hypothetical protein compare
PFR28_01327 +0.5 2.0 Protein YciE compare
PFR28_00498 +0.5 1.2 Cold shock protein CapB compare
PFR28_01326 +0.5 1.2 HTH-type transcriptional regulator GltC compare
PFR28_00068 +0.5 0.6 hypothetical protein compare
PFR28_02198 +0.5 1.6 hypothetical protein compare
PFR28_00933 +0.5 2.0 hypothetical protein compare
PFR28_00807 +0.5 1.9 Flagellar P-ring protein compare
PFR28_00862 +0.5 2.2 hypothetical protein compare
PFR28_00371 +0.5 2.2 hypothetical protein compare
PFR28_04218 +0.5 1.4 Phosphoribosyl-dephospho-CoA transferase compare
PFR28_04152 +0.5 2.4 hypothetical protein compare
PFR28_05068 +0.5 1.8 hypothetical protein compare
PFR28_01646 +0.5 1.2 hypothetical protein compare
PFR28_00756 +0.4 0.9 ATP-dependent RNA helicase RhlE compare
PFR28_03782 +0.4 2.1 hypothetical protein compare
PFR28_04220 +0.4 2.6 Malonyl-S-ACP:biotin-protein carboxyltransferase MADC compare
PFR28_01952 +0.4 1.1 hypothetical protein compare
PFR28_01294 +0.4 1.4 hypothetical protein compare
PFR28_02441 +0.4 1.9 putative protein YphB compare
PFR28_04641 +0.4 1.7 hypothetical protein compare
PFR28_01806 +0.4 1.7 Linearmycin resistance ATP-binding protein LnrL compare
PFR28_00845 +0.4 2.4 Flagellar biosynthetic protein FliP compare
PFR28_02251 +0.4 2.2 hypothetical protein compare
PFR28_01888 +0.4 1.8 hypothetical protein compare
PFR28_01922 +0.4 2.0 Inner membrane ABC transporter permease protein YdcV compare
PFR28_01943 +0.4 1.6 Putative isomerase YbhH compare
PFR28_00823 +0.4 3.0 Flagellin compare
PFR28_00342 +0.4 1.6 hypothetical protein compare
PFR28_01485 +0.4 1.3 hypothetical protein compare
PFR28_00657 +0.4 1.8 Glutathione transferase FosA compare
PFR28_02718 +0.4 1.8 hypothetical protein compare
PFR28_04990 +0.4 1.7 hypothetical protein compare
PFR28_02343 +0.4 2.2 hypothetical protein compare
PFR28_01855 +0.4 0.5 Hypoxic response protein 1 compare
PFR28_02648 +0.4 1.6 Nodulation protein D 2 compare
PFR28_05123 +0.4 2.4 Modulator of FtsH protease HflK compare
PFR28_02912 +0.4 2.2 hypothetical protein compare
PFR28_02871 +0.4 1.9 hypothetical protein compare
PFR28_00427 +0.4 3.5 RNA polymerase sigma factor RpoS compare
PFR28_03369 +0.4 2.1 Glycerol-3-phosphate regulon repressor compare
PFR28_01221 +0.4 1.6 hypothetical protein compare
PFR28_01749 +0.4 0.8 hypothetical protein compare
PFR28_03650 +0.4 1.2 hypothetical protein compare
PFR28_01376 +0.4 0.7 hypothetical protein compare
PFR28_02021 +0.4 1.1 FMN reductase (NADH) RutF compare
PFR28_01421 +0.4 2.0 putative GST-like protein YibF compare
PFR28_02667 +0.4 2.7 hypothetical protein compare
PFR28_02924 +0.4 0.8 2-methyl-aconitate isomerase compare
PFR28_00299 +0.4 1.0 hypothetical protein compare
PFR28_04023 +0.4 1.1 Bifunctional ligase/repressor BirA compare
PFR28_03680 +0.4 0.7 hypothetical protein compare
PFR28_02035 +0.4 2.0 putative oxidoreductase compare
PFR28_02249 +0.4 2.4 hypothetical protein compare
PFR28_02378 +0.4 1.4 2-ketogluconate reductase compare
PFR28_05196 +0.4 1.1 hypothetical protein compare
PFR28_02705 +0.4 0.8 hypothetical protein compare
PFR28_03651 +0.4 2.8 Lipid A deacylase PagL compare
PFR28_01986 +0.4 1.7 Phenol regulator MopR compare
PFR28_00836 +0.4 2.1 Flagellar FliJ protein compare
PFR28_01909 +0.4 1.5 Serine 3-dehydrogenase compare
PFR28_04709 +0.4 0.8 Peroxiredoxin OsmC compare
PFR28_02472 +0.4 3.1 1-deoxyxylulose-5-phosphate synthase YajO compare
PFR28_02509 +0.4 1.4 hypothetical protein compare
PFR28_02781 +0.4 1.9 hypothetical protein compare
PFR28_01418 +0.4 2.2 Homoserine/homoserine lactone efflux protein compare
PFR28_02082 +0.4 2.2 Diaminobutyrate--2-oxoglutarate aminotransferase compare
PFR28_01657 +0.4 2.0 hypothetical protein compare
PFR28_03202 +0.4 1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_00605 +0.4 2.9 hypothetical protein compare
PFR28_05233 +0.4 1.8 hypothetical protein compare
PFR28_03301 +0.4 1.2 putative protein YqjZ compare
PFR28_00944 +0.4 2.2 putative NTE family protein compare
PFR28_00356 +0.4 1.7 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_02377 +0.4 2.6 Serine transporter compare
PFR28_01494 +0.4 1.8 Type-1 fimbrial protein, A chain compare
PFR28_00384 +0.4 1.9 hypothetical protein compare
PFR28_02149 +0.4 1.4 hypothetical protein compare
PFR28_04624 +0.4 2.7 DNA polymerase I compare
PFR28_04041 +0.4 2.0 Cyclic AMP receptor-like protein compare
PFR28_03853 +0.4 0.7 hypothetical protein compare
PFR28_03849 +0.4 1.5 PhoH-like protein compare
PFR28_04825 +0.4 1.4 Mercuric resistance operon regulatory protein compare
PFR28_01381 +0.4 0.9 hypothetical protein compare
PFR28_02003 +0.4 1.8 HTH-type transcriptional activator RhaR compare
PFR28_04343 +0.3 0.8 Glutamine transport ATP-binding protein GlnQ compare
PFR28_05179 +0.3 1.1 Acetyltransferase compare
PFR28_01336 +0.3 2.3 Homospermidine synthase compare
PFR28_02841 +0.3 0.4 hypothetical protein compare
PFR28_02712 +0.3 1.4 hypothetical protein compare
PFR28_05070 +0.3 0.5 nebramycin 5 compare
PFR28_04540 +0.3 2.9 Ubiquinone biosynthesis O-methyltransferase, mitochondrial compare
PFR28_00367 +0.3 1.7 hypothetical protein compare
PFR28_03908 +0.3 1.5 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
PFR28_01970 +0.3 1.4 hypothetical protein compare
PFR28_01769 +0.3 1.6 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
PFR28_03909 +0.3 1.0 hypothetical protein compare
PFR28_04380 +0.3 0.7 Transcriptional regulator SutA compare
PFR28_04089 +0.3 0.5 PqqA binding protein compare
PFR28_00033 +0.3 0.8 hypothetical protein compare
PFR28_01662 +0.3 1.2 hypothetical protein compare
PFR28_00915 +0.3 2.0 Chain length determinant protein compare
PFR28_04598 +0.3 2.0 hypothetical protein compare
PFR28_03934 +0.3 1.8 hypothetical protein compare
PFR28_04866 +0.3 1.2 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
PFR28_04459 +0.3 2.3 hypothetical protein compare
PFR28_05008 +0.3 1.0 hypothetical protein compare
PFR28_00622 +0.3 1.1 Beta-ketoadipyl-CoA thiolase compare
PFR28_03254 +0.3 2.1 Flagellar basal body rod protein FlgB compare
PFR28_00847 +0.3 1.7 Flagellar biosynthetic protein FliR compare
PFR28_00007 +0.3 0.9 RecBCD enzyme subunit RecB compare
PFR28_01484 +0.3 1.9 Spermidine-binding periplasmic protein SpuE compare
PFR28_02988 +0.3 1.0 Glutathione S-transferase GstB compare
PFR28_01175 +0.3 1.4 hypothetical protein compare
PFR28_01146 +0.3 1.1 hypothetical protein compare
PFR28_02905 +0.3 1.5 hypothetical protein compare
PFR28_00157 +0.3 2.0 dTTP/UTP pyrophosphatase compare
PFR28_04550 +0.3 1.3 Ubiquinone biosynthesis O-methyltransferase, mitochondrial compare
PFR28_02209 +0.3 1.5 hypothetical protein compare
PFR28_05205 +0.3 1.6 Precorrin-8X methylmutase compare
PFR28_05058 +0.3 2.7 hypothetical protein compare
PFR28_00559 +0.3 2.0 ECF RNA polymerase sigma factor SigE compare
PFR28_02372 +0.3 1.3 hypothetical protein compare
PFR28_04158 +0.3 2.0 L-carnitine dehydrogenase compare
PFR28_04267 +0.3 1.0 hypothetical protein compare
PFR28_04682 +0.3 1.6 hypothetical protein compare
PFR28_03490 +0.3 2.5 Proline-specific permease ProY compare
PFR28_00162 +0.3 1.9 hypothetical protein compare
PFR28_02800 +0.3 0.4 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source sn-glycero-3-phosphocholine in Pseudomonas sp. RS175

For carbon source sn-glycero-3-phosphocholine across organisms