Experiment set2H25 for Phaeobacter inhibens DSM 17395

Compare to:

marine broth with MreB Perturbing Compound A22 0.02 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PGA1_78p00340 +1.4 2.0 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c07870 +1.4 8.2 alpha-glucoside transport system permease protein AglF compare
PGA1_c07880 +1.3 6.7 alpha-glucoside transport system permease protein AglG compare
PGA1_c34880 +1.3 10.9 putative response regulator compare
PGA1_c07890 +1.3 9.1 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_c07860 +1.3 9.0 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c08590 +1.2 7.5 heme NO binding domain-containing protein compare
PGA1_c07900 +1.2 8.4 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c33190 +1.2 6.3 putative anti-sigma-B factor antagonist compare
PGA1_c34890 +1.2 9.0 putative histidine-containing phosphotransfer protein compare
PGA1_c17830 +1.1 2.2 putative gene transfer agent prohead protease compare
PGA1_c08600 +1.1 8.8 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c23800 +1.1 3.1 hypothetical protein compare
PGA1_c11100 +1.1 3.6 Predicted membrane protein compare
PGA1_c06020 +1.0 2.4 thioesterase domain-containing protein compare
PGA1_c11410 +1.0 4.2 putative integral membrane protein compare
PGA1_c23730 +1.0 2.0 hypothetical protein compare
PGA1_c20140 +1.0 5.0 putative arginine-tRNA-protein transferase compare
PGA1_c18630 +0.9 2.9 hypothetical protein compare
PGA1_c09290 +0.9 2.8 WGR domain. compare
PGA1_78p00250 +0.9 1.7 putative HTH-type transcriptional regulator compare
PGA1_c02440 +0.9 7.0 putative ATP-binding/permease fusion ABC transporter compare
PGA1_c06480 +0.9 1.2 hypothetical protein compare
PGA1_c30000 +0.8 3.3 ATP-dependent Clp protease adaptor protein ClpS compare
PGA1_c14760 +0.8 1.5 bifunctional enzyme IspDF compare
PGA1_c07950 +0.8 1.4 hypothetical protein compare
PGA1_c02450 +0.8 5.6 putative outer membrane efflux protein compare
PGA1_c17720 +0.8 1.9 putative phage cell wall peptidase, NlpC/P60 family compare
PGA1_c14190 +0.8 4.4 putative transcriptional regulator, AraC family compare
PGA1_78p00150 +0.8 1.2 putative HTH-type transcriptional regulator compare
PGA1_c06200 +0.8 1.9 probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
PGA1_c03490 +0.8 2.2 hypothetical protein compare
PGA1_c29430 +0.8 1.5 3-mercaptopyruvate sulfurtransferase compare
PGA1_c28350 +0.8 3.6 peptidase C26 compare
PGA1_c34650 +0.8 0.9 UPF0090 protein YhbC compare
PGA1_65p00070 +0.7 1.3 putative regulatory protein, LuxR family compare
PGA1_c19180 +0.7 0.8 cytochrome c-type biogenesis protein CycH compare
PGA1_262p01330 +0.7 0.9 transcriptional regulator, MarR family compare
PGA1_c02460 +0.7 5.8 hypothetical protein compare
PGA1_78p00400 +0.7 1.3 tonB dependent receptor compare
PGA1_262p01060 +0.7 1.7 Protein of unknown function (DUF995). compare
PGA1_c10270 +0.7 4.5 hypothetical protein compare
PGA1_c21580 +0.7 2.7 hypothetical protein compare
PGA1_c12300 +0.7 4.8 glucans biosynthesis glucosyltransferase H compare
PGA1_c29400 +0.7 2.2 nitrogen regulatory protein P-II compare
PGA1_c02430 +0.7 4.4 type I secretion membrane fusion protein, HlyD family compare
PGA1_c26850 +0.7 1.6 Predicted metal-binding protein compare
PGA1_c03500 +0.7 2.0 putative cell division ATP-binding protein FtsE compare
PGA1_262p01420 +0.7 1.5 Protein of unknown function (DUF3726). compare
PGA1_c10050 +0.7 2.2 Lactoylglutathione lyase and related lyases compare
PGA1_c12730 +0.7 1.8 TIGR01244 family protein compare
PGA1_c21520 +0.7 1.2 hypothetical protein compare
PGA1_c02900 +0.6 0.7 putative molybdopterin-converting factor subunit 1 compare
PGA1_c19090 +0.6 1.4 Protein required for attachment to host cells compare
PGA1_c08890 +0.6 3.5 putative capsule polysaccharide export outer membrane protein compare
PGA1_c06630 +0.6 1.8 hypothetical protein compare
PGA1_c16420 +0.6 2.1 putative phospholipase / carboxylesterase compare
PGA1_c07650 +0.6 3.6 hypothetical protein compare
PGA1_c05360 +0.6 3.9 putative glycosyl transferase compare
PGA1_c12310 +0.6 4.1 glucans biosynthesis protein G compare
PGA1_c03530 +0.6 2.3 pyridoxamine 5'-phosphate oxidase-like protein compare
PGA1_c16060 +0.6 2.7 hypothetical protein compare
PGA1_c11400 +0.6 1.8 ferric uptake regulation protein Fur compare
PGA1_c26030 +0.6 1.0 transcriptional regulator, MarR family compare
PGA1_c31880 +0.6 5.1 signal transduction histidine kinase compare
PGA1_c29060 +0.6 0.8 HTH-type transcriptional regulator PecS compare
PGA1_c06980 +0.6 1.7 hypothetical protein compare
PGA1_262p01165 +0.6 1.2 hypothetical protein compare
PGA1_65p00160 +0.6 1.3 Bacterial putative lipoprotein (DUF940). compare
PGA1_262p01600 +0.6 0.9 putative ABC transporter, ATP binding protein compare
PGA1_c03365 +0.6 1.5 Uncharacterized small protein compare
PGA1_c15700 +0.6 3.2 hypothetical protein compare
PGA1_c01150 +0.6 4.4 transcriptional regulatory protein ChvI compare
PGA1_c24790 +0.6 1.4 hypothetical protein compare
PGA1_c18130 +0.6 1.8 transglycosylase-like protein compare
PGA1_65p00210 +0.6 0.9 hypothetical protein compare
PGA1_c21140 +0.6 2.1 carboxymuconolactone decarboxylase-like protein compare
PGA1_c30100 +0.6 1.8 cytochrome c oxidase subunit 4 compare
PGA1_c10920 +0.6 3.7 hypothetical protein compare
PGA1_c36020 +0.5 1.3 putative 3'-5'-exonuclease compare
PGA1_c17580 +0.5 3.9 hypothetical protein compare
PGA1_c14480 +0.5 2.7 S-adenosylmethionine decarboxylase SpeH compare
PGA1_c35560 +0.5 3.3 chemotaxis protein MotB-like protein compare
PGA1_c31260 +0.5 5.0 Protein of unknown function (DUF3131). compare
PGA1_c08755 +0.5 3.2 sarcosine oxidase subunit delta compare
PGA1_262p00450 +0.5 1.6 glucose transporter, ATPase component (from data) compare
PGA1_262p00700 +0.5 1.2 stressosome protein rsbS-like protein compare
PGA1_262p01370 +0.5 2.6 putative dioxygenase compare
PGA1_262p02170 +0.5 1.0 putative chemoreceptor glutamine deamidase CheD compare
PGA1_c33310 +0.5 1.5 Uncharacterized protein conserved in bacteria compare
PGA1_c10580 +0.5 2.3 ribonuclease J 1 compare
PGA1_c05280 +0.5 3.3 hypothetical protein compare
PGA1_c07960 +0.5 3.0 putative integral membrane protein compare
PGA1_c14490 +0.5 1.2 Uncharacterized conserved small protein compare
PGA1_c29070 +0.5 1.4 integral membrane protein PecM compare
PGA1_c26400 +0.5 1.3 putative HTH-type transcriptional regulator compare
PGA1_c13480 +0.5 2.9 hypothetical protein compare
PGA1_c12770 +0.5 1.0 hypothetical protein compare
PGA1_c16400 +0.5 2.5 HNH endonuclease compare
PGA1_65p00170 +0.5 1.4 putative capsular polysaccharide biosynthesis protein compare
PGA1_65p00080 +0.5 1.2 putative glycosyl transferase compare
PGA1_c24310 +0.5 1.8 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c03670 +0.5 2.0 hypothetical protein compare
PGA1_c33220 +0.5 1.8 hemimethylated DNA-binding protein, YccV-like compare
PGA1_65p00380 +0.5 0.8 hypothetical protein compare
PGA1_c21050 +0.5 1.5 glutaredoxin-like protein compare
PGA1_c25990 +0.5 1.1 hypothetical protein compare
PGA1_c34940 +0.5 1.9 Putative sterol carrier protein compare
PGA1_c05290 +0.5 3.8 polysaccharide biosynthesis protein ExoT-like protein compare
PGA1_c11190 +0.5 0.7 hypothetical protein compare
PGA1_c05370 +0.5 4.5 polyketide synthase compare
PGA1_c05400 +0.5 3.3 putative glycosyl transferase, family 2 compare
PGA1_c03290 +0.5 1.9 transcription elongation factor GreA compare
PGA1_c09310 +0.5 2.5 transcription regulator, AraC family compare
PGA1_c14820 +0.5 1.7 hypothetical protein compare
PGA1_c25970 +0.5 1.3 tonB-like protein compare
PGA1_c11280 +0.5 2.3 Putative hemolysin compare
PGA1_262p02070 +0.5 1.2 hypothetical protein compare
PGA1_262p01480 +0.5 1.3 transcriptional regulator, AraC family compare
PGA1_78p00160 +0.5 0.9 putative sugar-binding periplasmic protein compare
PGA1_c21210 +0.5 1.5 putative lactoylglutathione lyase compare
PGA1_c31270 +0.5 4.4 putative glycosyltransferase / polysaccharide deacetylase compare
PGA1_c20910 +0.5 1.4 PHA synthesis repressor protein PhaR compare
PGA1_c07730 +0.5 1.5 putative zinc-binding alcohol dehydrogenase compare
PGA1_c01160 +0.5 3.7 sensor protein ChvG compare
PGA1_c22400 +0.5 2.4 phage conserved hypothetical protein, phiE125 gp8 family compare
PGA1_c17650 +0.5 1.3 hypothetical protein compare
PGA1_262p01990 +0.5 2.3 Predicted permeases compare
PGA1_c27720 +0.5 2.6 ATPases involved in chromosome partitioning compare
PGA1_c19040 +0.5 3.5 multidrug resistance protein MdtC compare
PGA1_c18570 +0.5 1.6 hypothetical protein compare
PGA1_c20130 +0.5 1.8 RDD family. compare
PGA1_c20150 +0.5 1.5 glyoxalase-like protein compare
PGA1_c25160 +0.5 2.9 putative peptidase, M23 family compare
PGA1_c02920 +0.5 1.1 hypothetical protein compare
PGA1_262p02080 +0.5 1.7 hypothetical protein compare
PGA1_c32090 +0.5 2.4 glutathione transport system permease protein GsiD compare
PGA1_c17110 +0.4 2.2 hypothetical protein compare
PGA1_c12320 +0.4 2.0 Uncharacterized protein conserved in bacteria compare
PGA1_c05310 +0.4 3.1 putative glycosyl transferase compare
PGA1_262p00260 +0.4 1.5 hypothetical protein compare
PGA1_262p01340 +0.4 1.6 hypothetical protein compare
PGA1_c11490 +0.4 2.3 pyrimidine-specific ribonucleoside hydrolase RihA compare
PGA1_c11580 +0.4 2.1 octopine permease ATP-binding protein P compare
PGA1_c31210 +0.4 2.4 Protein of unknown function (DUF2948). compare
PGA1_c06440 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
PGA1_c08950 +0.4 2.0 hypothetical protein compare
PGA1_c13860 +0.4 2.1 transcriptional regulator, GntR family compare
PGA1_c11740 +0.4 1.9 rhomboid protein-like protein compare
PGA1_c04080 +0.4 2.9 phenylacetic acid degradation protein PaaA compare
PGA1_c29320 +0.4 1.8 putative endoribonuclease L-PSP compare
PGA1_c07710 +0.4 0.5 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_262p00940 +0.4 1.1 acyl-CoA dehydrogenase TdaE compare
PGA1_c05410 +0.4 2.6 hypothetical protein compare
PGA1_c23670 +0.4 0.9 Putative peptidoglycan binding domain. compare
PGA1_c11320 +0.4 1.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PGA1_c17610 +0.4 2.4 putative alanine racemase compare
PGA1_c22610 +0.4 1.8 putative transcriptional regulator, containing response regulator domain compare
PGA1_c05750 +0.4 1.3 hypothetical protein compare
PGA1_c32670 +0.4 1.8 putative phosphoglycerate mutase family protein compare
PGA1_c24200 +0.4 1.3 putative NUDIX hydrolase compare
PGA1_262p01120 +0.4 0.8 hypothetical protein compare
PGA1_c30510 +0.4 1.6 putative leucine-responsive regulatory protein compare
PGA1_c14140 +0.4 0.9 hypothetical protein compare
PGA1_c11000 +0.4 1.2 hypothetical protein compare
PGA1_c31075 +0.4 3.2 hypothetical protein compare
PGA1_65p00310 +0.4 0.8 GDP-mannose 4,6-dehydratase Gmd compare
PGA1_c23420 +0.4 3.2 Domain of unknown function. compare
PGA1_c13280 +0.4 1.9 hypothetical protein compare
PGA1_262p00420 +0.4 1.9 Transcriptional regulator/sugar kinase compare
PGA1_c06180 +0.4 2.1 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
PGA1_c15290 +0.4 1.0 Lactoylglutathione lyase and related lyases compare
PGA1_c18280 +0.4 1.9 hypothetical protein compare
PGA1_c07740 +0.4 0.7 putative gluconate 5-dehydrogenase compare
PGA1_c17590 +0.4 1.4 hypothetical protein compare
PGA1_c25620 +0.4 1.8 hypothetical protein compare
PGA1_c15790 +0.4 1.1 putative phosphate transporter, phosphate-binding protein compare
PGA1_c19030 +0.4 2.5 putative efflux transporter, RND family, MFP subunit compare
PGA1_c25020 +0.4 2.2 putative transcriptional regulator, LysR family compare
PGA1_c27250 +0.4 1.6 putative response regulator compare
PGA1_c02170 +0.4 2.2 Uncharacterized conserved protein compare
PGA1_c34910 +0.4 2.8 hypothetical protein compare
PGA1_c24860 +0.4 1.0 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE compare
PGA1_c15250 +0.4 1.4 hypothetical protein compare
PGA1_c16260 +0.4 3.0 putative membrane dipeptidase compare
PGA1_c33660 +0.4 1.9 hypothetical protein compare
PGA1_c18300 +0.4 2.3 hypothetical protein compare
PGA1_c31100 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
PGA1_262p00810 +0.4 1.8 putative flavoprotein, HFCD family compare
PGA1_c12180 +0.4 1.6 Domain of unknown function (DUF1992). compare
PGA1_c05650 +0.4 0.5 tRNA pseudouridine synthase A compare
PGA1_c16830 +0.4 1.2 xanthine phosphoribosyltransferase Gpt compare
PGA1_c28960 +0.4 1.3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC-like protein compare
PGA1_c18210 +0.4 2.4 phage late control gene D protein (GPD) compare
PGA1_c35270 +0.4 0.8 Uncharacterized conserved small protein compare
PGA1_c34140 +0.4 2.0 histone deacetylase compare
PGA1_262p00800 +0.4 2.7 phenylacetic acid degradation protein PaaZ compare
PGA1_c05300 +0.4 2.2 putative glycosyl transferase compare
PGA1_c10640 +0.4 2.1 hypothetical protein compare
PGA1_262p00250 +0.4 1.1 ferritin-like protein compare


Specific Phenotypes

None in this experiment

For Phaeobacter inhibens DSM 17395 in stress experiments

For stress MreB Perturbing Compound A22 across organisms