Experiment set29IT057 for Pseudomonas putida KT2440

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_5053 +1.3 6.9 Protein-export protein SecB compare
PP_3840 +1.2 2.4 conserved protein of unknown function compare
PP_1113 +1.1 9.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3043 +1.1 1.9 conserved protein of unknown function compare
PP_3312 +1.0 1.5 putative Heat shock protein compare
PP_4171 +1.0 8.8 conserved exported protein of unknown function compare
PP_4373 +1.0 7.6 Transcriptional regulator FleQ compare
PP_2387 +1.0 4.0 conserved protein of unknown function compare
PP_2646 +0.9 5.1 conserved protein of unknown function compare
PP_3035 +0.9 2.0 conserved protein of unknown function compare
PP_5232 +0.9 1.7 conserved protein of unknown function compare
PP_5393 +0.9 1.3 putative metal-binding chaperone compare
PP_3519 +0.9 1.3 putative Lipoprotein compare
PP_5359 +0.9 1.6 CobW/P47K family protein compare
PP_2307 +0.8 2.4 conserved protein of unknown function compare
PP_1038 +0.8 4.0 conserved protein of unknown function compare
PP_3064 +0.8 2.7 Phage tail protein compare
PP_1903 +0.8 2.7 putative phosphotyrosine-protein phosphatase compare
PP_0958 +0.8 4.7 phospholipid ABC transporter ATP-binding subunit compare
PP_3603 +0.8 4.9 Transcriptional regulator, GntR family compare
PP_5583 +0.8 1.5 conserved protein of unknown function compare
PP_1623 +0.8 5.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_0874 +0.8 1.1 conserved protein of unknown function compare
PP_2899 +0.8 1.9 conserved exported protein of unknown function compare
PP_1026 +0.8 1.6 Peptidase, M23/M37 family compare
PP_1774 +0.8 1.0 conserved exported protein of unknown function compare
PP_4930 +0.8 2.9 putative small multidrug resistance protein compare
PP_1004 +0.8 1.8 conserved protein of unknown function compare
PP_2142 +0.8 1.7 Cell division inhibitor SulA compare
PP_0960 +0.8 4.3 phospholipid ABC transporter binding protein compare
PP_4172 +0.8 3.9 conserved exported protein of unknown function compare
PP_2074 +0.8 2.6 Transcriptional regulator, LysR family compare
PP_4994 +0.8 4.2 conserved protein of unknown function compare
PP_1503 +0.7 2.0 conserved protein of unknown function compare
PP_2510 +0.7 1.8 conserved protein of unknown function compare
PP_0165 +0.7 6.0 GGDEF domain protein compare
PP_2215 +0.7 2.6 acetyl-CoA acetyltransferase compare
PP_2645 +0.7 5.3 magnesium transporter, ATP-dependent compare
PP_3916 +0.7 2.7 conserved protein of unknown function compare
PP_2889 +0.7 3.1 putative Transmembrane regulator PrtR compare
PP_2581 +0.7 1.6 conserved protein of unknown function compare
PP_2118 +0.6 2.5 conserved protein of unknown function compare
PP_2147 +0.6 2.0 conserved exported protein of unknown function compare
PP_3926 +0.6 0.8 short-chain dehydrogenase compare
PP_5008 +0.6 1.0 Poly granule-associated protein compare
PP_1055 +0.6 0.8 Type II secretion pathway protein GspN compare
PP_5045 +0.6 3.1 tRNA sulfurtransferase compare
PP_0168 +0.6 5.7 putative surface adhesion protein compare
PP_1898 +0.6 2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_2748 +0.6 1.5 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5610 +0.6 1.3 protein of unknown function compare
PP_5705 +0.6 1.1 protein of unknown function compare
PP_0166 +0.6 4.9 HlyD family secretion protein compare
PP_5201 +0.6 2.3 conserved protein of unknown function, UPF0149 family compare
PP_3726 +0.6 1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_4213 +0.6 2.1 putative dipeptidase compare
PP_0003 +0.6 1.9 16S RNA methyltransferase compare
PP_0959 +0.6 2.0 phospholipid ABC transporter compare
PP_1215 +0.6 0.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1112 +0.6 4.0 conserved membrane protein of unknown function compare
PP_0574 +0.6 4.5 DNA-binding response regulator, LuxR family compare
PP_0167 +0.6 5.1 Toxin secretion ATP-binding protein compare
PP_2459 +0.6 0.8 ribose pyranase compare
PP_2907 +0.6 2.1 DNA-binding response regulator compare
PP_1529 +0.6 3.4 Probable cysteine desulfurase compare
PP_0355 +0.6 2.6 Response regulator compare
PP_0274 +0.6 0.6 putative transcriptional regulator containing HTH domain compare
PP_0905 +0.6 1.2 conserved exported protein of unknown function compare
PP_0961 +0.6 4.0 toluene tolerance protein compare
PP_4519 +0.6 4.6 Agglutination protein compare
PP_4569 +0.6 1.3 conserved protein of unknown function compare
PP_5295 +0.6 1.0 conserved protein of unknown function compare
PP_2247 +0.6 1.6 putative Endoribonuclease compare
PP_4173 +0.5 3.6 Sensor histidine kinase/response regulator compare
PP_4701 +0.5 0.8 glucose-6-phosphate isomerase compare
PP_1864 +0.5 1.8 conserved protein of unknown function compare
PP_1142 +0.5 0.6 conserved protein of unknown function compare
PP_4593 +0.5 1.3 conserved protein of unknown function compare
PP_0352 +0.5 2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0821 +0.5 2.9 conserved exported protein of unknown function compare
PP_0827 +0.5 2.8 putative phosphonate transport system permease protein PtxC compare
PP_4545 +0.5 2.1 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_3899 +0.5 2.0 conserved protein of unknown function, hicB family compare
PP_4406 +0.5 1.5 conserved protein of unknown function compare
PP_0957 +0.5 0.9 D-arabinose 5-phosphate isomerase compare
PP_3531 +0.5 2.4 conserved exported protein of unknown function compare
PP_2458 +0.5 3.3 ribokinase compare
PP_1190 +0.5 2.0 conserved protein of unknown function compare
PP_5701 +0.5 0.9 conserved protein of unknown function compare
PP_2804 +0.5 2.1 Hydrolase, alpha/beta fold family compare
PP_3748 +0.5 2.0 conserved hypothetical protein compare
PP_4390 +0.5 3.5 flagellar basal-body rod protein FlgC compare
PP_0303 +0.5 2.1 dehydrocarnitine cleavage enzyme compare
PP_5572 +0.5 1.2 protein of unknown function compare
PP_4400 +0.5 3.0 Bkd operon transcriptional regulator compare
PP_2023 +0.5 2.1 Glutathione S-transferase family protein compare
PP_1066 +0.5 2.2 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5604 +0.5 1.1 putative subtilisin-like serine protease compare
PP_2610 +0.5 1.9 conserved protein of unknown function compare
PP_5176 +0.5 0.5 conserved protein of unknown function compare
PP_2824 +0.5 2.3 Transcriptional regulator, TetR family compare
PP_4308 +0.5 2.7 Transcriptional regulator, AsnC family compare
PP_1208 +0.5 0.7 conserved protein of unknown function, SlyX family compare
PP_1210 +0.5 2.1 DNA-binding stress protein compare
PP_3258 +0.5 1.8 conserved protein of unknown function compare
PP_3127 +0.5 2.9 putative Exopolysaccharide transport protein compare
PP_0803 +0.5 2.5 Protein secretion ABC efflux system, membrane fusion protein compare
PP_3320 +0.5 1.9 conserved protein of unknown function compare
PP_4265 +0.5 1.3 DNA-binding transcriptional dual regulator compare
PP_4050 +0.5 3.9 glycogen synthase compare
PP_5051 +0.5 1.4 conserved protein of unknown function compare
PP_0831 +0.4 2.9 hypothetical protein compare
PP_0971 +0.4 2.5 conserved protein of unknown function compare
PP_1008 +0.4 1.3 RNA polymerase subunit sigma-24 compare
PP_2203 +0.4 1.1 conserved protein of unknown function compare
PP_0640 +0.4 2.3 conserved protein of unknown function compare
PP_1352 +0.4 2.0 UPF0234 protein PP_1352 compare
PP_3928 +0.4 2.3 conserved exported protein of unknown function compare
PP_4820 +0.4 1.6 tRNA-dihydrouridine synthase B compare
PP_0086 +0.4 1.3 conserved protein of unknown function compare
PP_1328 +0.4 1.0 Protein MraZ compare
PP_4539 +0.4 2.9 Transcriptional regulator, LysR family compare
PP_0674 +0.4 3.5 ADP/ATP ratio sensor and inhibitor of translation compare
PP_5143 +0.4 1.1 conserved membrane protein of unknown function compare
PP_3117 +0.4 1.4 putative protein involved in error-prone processing of DNA lesions compare
PP_2705 +0.4 1.1 conserved protein of unknown function compare
PP_4036 +0.4 2.3 D-hydantoinase/dihydropyrimidinase compare
PP_3014 +0.4 1.5 conserved exported protein of unknown function compare
PP_4808 +0.4 1.7 23S rRNA m3psi1915 methyltransferase compare
PP_3486 +0.4 2.4 putative cytochrome c compare
PP_0746 +0.4 2.3 Uracil phosphoribosyltransferase compare
PP_4214 +0.4 1.9 pyoverdine biosynthesis related protein compare
PP_4642 +0.4 0.7 Cyclic diguanosine monophosphate-binding protein compare
PP_4383 +0.4 2.3 Flagellar P-ring protein compare
PP_2330 +0.4 1.6 conserved protein of unknown function compare
PP_5556 +0.4 1.5 putative bacteriophage lysis protein compare
PP_0145 +0.4 2.1 Na+/Pi-cotransporter compare
PP_4198 +0.4 2.7 OmpA family protein compare
PP_0677 +0.4 1.4 putative Lipoprotein compare
PP_5582 +0.4 0.6 conserved protein of unknown function compare
PP_0345 +0.4 1.4 putative Heptose kinase WapP compare
PP_5205 +0.4 1.6 conserved protein of unknown function compare
PP_4074 +0.4 2.1 conserved protein of unknown function compare
PP_5162 +0.4 1.9 conserved exported protein of unknown function compare
PP_4388 +0.4 3.3 Flagellar hook protein FlgE compare
PP_4916 +0.4 1.3 putative esterase compare
PP_5533 +0.4 0.8 conserved protein of unknown function compare
PP_0022 +0.4 1.1 hypothetical protein compare
PP_1544 +0.4 1.3 conserved protein of unknown function compare
PP_4814 +0.4 0.7 ATP-dependent protease La domain protein compare
PP_2890 +0.4 2.0 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI compare
PP_3625 +0.4 1.9 Transporter, LysE family compare
PP_4208 +0.4 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4238 +0.4 1.3 conserved protein of unknown function compare
PP_3495 +0.4 2.2 tRNA (adenine(22)-N(1))-methyltransferase compare
PP_1833 +0.4 2.2 conserved protein of unknown function compare
PP_5187 +0.4 1.8 putative thiamine triphosphatase compare
PP_4660 +0.4 1.3 Transcriptional regulator, LysR family compare
PP_2716 +0.4 1.3 arsenate reductase compare
PP_5689 +0.4 1.3 conserved protein of unknown function compare
PP_5324 +0.4 0.6 Response regulator compare
PP_3634 +0.4 1.4 putative acetyltransferase, GNAT family compare
PP_2332 +0.4 2.3 conserved exported protein of unknown function compare
PP_5209 +0.4 1.8 conserved exported protein of unknown function compare
PP_5358 +0.4 2.6 conserved protein of unknown function compare
PP_2970 +0.4 0.8 conserved exported protein of unknown function compare
PP_1140 +0.4 2.7 branched chain amino acid transporter - permease subunit compare
PP_3898 +0.4 1.3 conserved protein of unknown function compare
PP_0830 +0.4 2.6 Acetyltransferase, GNAT family compare
PP_2285 +0.4 1.9 conserved exported protein of unknown function compare
PP_4282 +0.4 1.7 Aquaporin Z compare
PP_5592 +0.4 2.3 conserved protein of unknown function compare
PP_0577 +0.4 2.4 conserved protein of unknown function compare
PP_2432 +0.4 1.4 6,7-dihydropteridine reductase compare
PP_5575 +0.4 1.0 conserved protein of unknown function compare
PP_0532 +0.4 1.5 conserved exported protein of unknown function compare
PP_1349 +0.4 1.5 ATP:cob(I)alamin adenosyltransferase compare
PP_2472 +0.4 1.9 putative transcriptional regulator, MerR family compare
PP_1186 +0.4 0.7 two component system DNA-binding transcriptional dual regulator compare
PP_2253 +0.4 0.6 Transcriptional regulator, GntR family compare
PP_4662 +0.4 1.3 conserved protein of unknown function compare
PP_1729 +0.4 0.5 conserved protein of unknown function compare
PP_1731 +0.4 1.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_3512 +0.4 1.7 conserved membrane protein of unknown function compare
PP_1381 +0.4 0.6 4-carboxymuconolactone decarboxylase compare
PP_5473 +0.4 1.2 putative transcriptional regulator, LuxR family compare
PP_3036 +0.4 1.6 conserved protein of unknown function compare
PP_4470 +0.4 1.3 putative transcriptional regulator (Arc domain-containing) compare
PP_5066 +0.4 1.9 K(+)/H(+) antiporter NhaP2 compare
PP_2526 +0.4 1.1 conserved membrane protein of unknown function compare
PP_5732 +0.4 2.0 putative metal-binding protein compare
PP_2885 +0.4 1.8 putative Transporter compare
PP_2896 +0.4 1.7 conserved protein of unknown function compare
PP_3199 +0.4 1.8 putative Monooxygenase compare
PP_3817 +0.4 1.8 Polyamine ABC transporter, ATP-binding protein compare
PP_4207 +0.4 1.2 conserved protein of unknown function compare
PP_4371 +0.4 2.6 two component system AtoC DNA-binding transcriptional activator compare
PP_2152 +0.4 1.0 glycerophosphoryl diester phosphodiesterase compare
PP_1808 +0.4 1.7 glucose-6-phosphate isomerase compare
PP_4348 +0.4 1.6 putative Cystathionine beta-lyase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Pseudomonas putida KT2440

For carbon source D-Galacturonic Acid monohydrate across organisms