Experiment set29IT055 for Pseudomonas putida KT2440

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -7.0 -21.2 Carbamoyl-phosphate synthase large chain compare
PP_0691 -6.6 -6.5 Glutamate 5-kinase compare
PP_0422 -6.3 -4.4 Indole-3-glycerol phosphate synthase compare
PP_4724 -6.3 -12.1 Carbamoyl-phosphate synthase small chain compare
PP_0417 -6.2 -9.5 Anthranilate synthase component 1 compare
PP_1988 -6.1 -9.3 3-isopropylmalate dehydrogenase compare
PP_3511 -6.1 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_0967 -6.1 -8.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -5.9 -9.9 Ketol-acid reductoisomerase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -5.8 -8.0 Histidinol dehydrogenase compare
PP_0793 -5.8 -6.9 Phosphotransferase system, fructose-specific EI/HPr/EIIA components conserved
PP_0290 -5.8 -5.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -5.7 -8.8 Argininosuccinate synthase compare
PP_2433 -5.7 -3.9 conserved protein of unknown function compare
PP_0795 -5.6 -8.6 fructose PTS permease - IIBC component conserved
PP_1995 -5.6 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5346 -5.5 -7.5 pyruvate carboxylase subunit B compare
PP_5347 -5.5 -7.5 pyruvate carboxylase subunit A compare
PP_4679 -5.4 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.4 -3.7 Acetylglutamate kinase compare
PP_1231 -5.4 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5095 -5.4 -3.7 pyrroline-5-carboxylate reductase compare
PP_4680 -5.4 -10.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -5.2 -3.6 Argininosuccinate lyase compare
PP_0289 -5.2 -6.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4909 -5.2 -7.9 phosphoserine phosphatase compare
PP_1079 -5.1 -3.5 Ornithine carbamoyltransferase compare
PP_5097 -5.1 -12.7 homoserine O-acetyltransferase compare
PP_2168 -5.1 -8.4 Transaldolase compare
PP_0421 -4.9 -8.2 Anthranilate phosphoribosyltransferase compare
PP_0794 -4.9 -3.4 1-phosphofructokinase monomer compare
PP_4890 -4.9 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_1986 -4.7 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_4364 -4.7 -5.6 putative Anti-sigma F factor antagonist compare
PP_5098 -4.7 -9.4 methionine biosynthesis protein MetW compare
PP_0787 -4.5 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5128 -4.5 -8.6 Dihydroxy-acid dehydratase compare
PP_5185 -4.4 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2001 -4.4 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_0965 -4.1 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2327 -4.1 -9.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5717 -4.0 -2.7 conserved protein of unknown function compare
PP_1233 -4.0 -4.7 sulfurtransferase compare
PP_0082 -4.0 -3.9 tryptophan synthase alpha chain compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_4058 -3.9 -12.5 1,4-alpha-glucan branching enzyme compare
PP_0339 -3.9 -5.4 Pyruvate dehydrogenase E1 component compare
PP_5348 -3.8 -9.4 Transcriptional regulator, LysR family compare
PP_2371 -3.6 -5.0 Sulphite reductase hemoprotein, beta subunit compare
PP_4782 -3.5 -5.4 Phosphomethylpyrimidine kinase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3999 -3.3 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5104 -3.1 -8.3 thiazole synthase compare
PP_5155 -3.1 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5015 -3.1 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1111 -3.1 -6.7 putative Synthetase compare
PP_5014 -3.1 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -3.0 -4.6 Nitrogen regulation protein NR(I) compare
PP_2868 -3.0 -8.9 Transcriptional regulator, Cro/CI family compare
PP_0420 -3.0 -7.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1025 -2.9 -8.3 2-isopropylmalate synthase compare
PP_1110 -2.9 -5.1 serine acetyltransferase compare
PP_1022 -2.8 -4.2 glucose 6-phosphate-1-dehydrogenase compare
PP_3105 -2.7 -2.4 conserved membrane protein of unknown function compare
PP_1109 -2.6 -11.5 Transcriptional regulator, GntR family compare
PP_4701 -2.5 -1.6 glucose-6-phosphate isomerase compare
PP_1664 -2.5 -4.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_0362 -2.4 -14.1 Biotin synthase compare
PP_1362 -2.4 -2.3 pyruvate kinase II compare
PP_5350 -2.3 -5.0 Transcriptional regulator, RpiR family compare
PP_2370 -2.2 -2.5 conserved protein of unknown function compare
PP_0246 -2.2 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_4789 -2.1 -3.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3768 -2.1 -4.6 putative shikimate 5-dehydrogenase compare
PP_4922 -2.0 -10.8 Phosphomethylpyrimidine synthase compare
PP_4122 -1.9 -1.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4120 -1.9 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_3790 -1.9 -9.3 diaminopimelate epimerase compare
PP_0435 -1.9 -14.8 Peptidase, M23/M37 family compare
PP_5313 -1.8 -2.8 DNA-binding protein HU-alpha compare
PP_5114 -1.8 -1.2 putative adenine methyltransferase compare
PP_4004 -1.8 -1.8 DNA translocase FtsK compare
PP_1013 -1.8 -7.0 Sensor histidine kinase compare
PP_0001 -1.8 -1.7 probable chromosome-partitioning protein compare
PP_0185 -1.8 -7.7 Positive alginate biosynthesis regulatory protein compare
PP_4342 -1.8 -1.7 flagellar synthesis regulator, putative ATPase compare
PP_0164 -1.8 -8.5 conserved protein of unknown function compare
PP_5039 -1.7 -2.9 conserved protein of unknown function compare
PP_3603 -1.7 -7.3 Transcriptional regulator, GntR family compare
PP_4895 -1.7 -3.2 tRNA dimethylallyltransferase compare
PP_1764 -1.7 -6.6 Phosphoglycolate phosphatase 2 compare
PP_5322 -1.7 -6.1 putative metal ion transporter compare
PP_4910 -1.7 -1.1 conserved protein of unknown function compare
PP_0291 -1.7 -2.7 conserved protein of unknown function compare
PP_4060 -1.7 -10.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5359 -1.7 -2.5 CobW/P47K family protein compare
PP_4131 -1.6 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_0406 -1.6 -6.8 Nucleotidyltransferase family protein compare
PP_4874 -1.6 -1.5 50S ribosomal protein L9 compare
PP_0236 -1.5 -2.8 NAD(P)H-dependent FMN reductase subunit compare
PP_1941 -1.5 -6.0 conserved protein of unknown function compare
PP_3484 -1.4 -3.5 Response regulator receiver protein compare
PP_0949 -1.4 -4.5 putative ATP-binding protein UPF0042 compare
PP_4008 -1.4 -5.5 ATP-dependent serine protease compare
PP_1654 -1.4 -2.8 cysteine synthase B compare
PP_4700 -1.4 -4.0 pantothenate synthetase compare
PP_4964 -1.4 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_0063 -1.4 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1009 -1.4 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4130 -1.4 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2307 -1.4 -1.4 conserved protein of unknown function compare
PP_4793 -1.3 -2.8 conserved protein of unknown function compare
PP_0735 -1.3 -0.9 molybdopterin-synthase adenylyltransferase compare
PP_2324 -1.3 -6.8 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5332 -1.3 -8.4 conserved protein of unknown function compare
PP_1568 -1.2 -1.1 conserved protein of unknown function compare
PP_5227 -1.2 -5.9 diaminopimelate decarboxylase compare
PP_1328 -1.2 -1.8 Protein MraZ compare
PP_0775 -1.2 -1.5 conserved protein of unknown function compare
PP_1994 -1.2 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_1702 -1.2 -3.4 Recombination-associated protein RdgC compare
PP_4124 -1.2 -1.1 NADH-quinone oxidoreductase subunit G compare
PP_1780 -1.2 -10.1 putative mannosyltransferase compare
PP_5328 -1.1 -3.8 putative phosphate transport system permease protein compare
PP_0593 -1.1 -1.2 putative ribosome-binding factor compare
PP_1778 -1.1 -4.2 Lipopolysaccharide ABC export system, permease protein compare
PP_3951 -1.1 -4.8 3-oxoadipate CoA-transferase subunit A compare
PP_2328 -1.1 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_3672 -1.1 -2.8 conserved protein of unknown function compare
PP_2337 -1.1 -1.7 aconitate isomerase compare
PP_5230 -1.1 -3.2 Tyrosine recombinase XerC compare
PP_0833 -1.1 -1.9 queuine tRNA-ribosyltransferase compare
PP_2145 -1.1 -5.0 beta-N-acetylglucosaminidase compare
PP_2581 -1.1 -1.6 conserved protein of unknown function compare
PP_1426 -1.1 -7.7 L-aspartate oxidase compare
PP_2442 -1.1 -1.6 conserved protein of unknown function, DUF480 family compare
PP_5017 -1.1 -0.9 Sec-independent protein translocase protein TatB compare
PP_1800 -1.1 -6.5 Oxidoreductase Rmd compare
PP_5303 -1.1 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1802 -1.1 -8.5 glycosyl transferase compare
PP_3952 -1.1 -6.5 3-oxoadipate CoA-transferase subunit A compare
PP_1216 -1.0 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4699 -1.0 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1237 -1.0 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4695 -1.0 -5.4 Sensory box histidine kinase compare
PP_1198 -1.0 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3726 -1.0 -1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_1799 -1.0 -7.2 GDP-mannose 4,6-dehydratase compare
PP_4938 -1.0 -4.8 putative Glycosyl transferase compare
PP_2348 -1.0 -4.9 Sensor histidine kinase compare
PP_2000 -1.0 -1.1 amidophosphoribosyl transferase compare
PP_5393 -1.0 -1.1 putative metal-binding chaperone compare
PP_4199 -1.0 -1.4 putative Lipoprotein compare
PP_1804 -1.0 -5.7 Glycosyl transferase WbpL compare
PP_2575 -1.0 -1.3 conserved exported protein of unknown function compare
PP_5456 -1.0 -1.2 conserved protein of unknown function compare
PP_1576 -1.0 -3.6 putative Immunity protein compare
PP_1805 -1.0 -7.8 Polysaccharide biosynthesis protein compare
PP_1293 -1.0 -1.2 molybdopterin synthase small subunit compare
PP_0948 -0.9 -1.6 Phosphocarrier protein HPr compare
PP_2229 -0.9 -2.2 putative K(+)/H(+) antiporter subunit C compare
PP_3312 -0.9 -1.0 putative Heat shock protein compare
PP_5652 -0.9 -2.0 conserved protein of unknown function, phage origin compare
PP_4126 -0.9 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_5453 -0.9 -1.4 conserved protein of unknown function compare
PP_5507 -0.9 -1.5 protein of unknown function compare
PP_1217 -0.9 -1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5110 -0.9 -1.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1801 -0.9 -5.3 Glycosyl transferase WbpY compare
PP_2414 -0.9 -1.2 conserved exported protein of unknown function compare
PP_2441 -0.9 -1.9 conserved protein of unknown function compare
PP_4387 -0.9 -1.7 conserved exported protein of unknown function compare
PP_1493 -0.9 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2137 -0.8 -2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_1779 -0.8 -3.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0413 -0.8 -6.0 Polyamine ABC transporter, permease protein compare
PP_1045 -0.8 -1.5 Type II secretion pathway protein XcpP compare
PP_0434 -0.8 -5.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4129 -0.8 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3286 -0.8 -3.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2820 -0.8 -2.9 HTH-type transcriptional regulator nfxB compare
PP_3776 -0.8 -5.6 putative permease (RarD protein) compare
PP_4902 -0.8 -1.1 Oligoribonuclease compare
PP_5075 -0.8 -5.3 glutamate synthase (NADPH) beta subunit compare
PP_5035 -0.8 -3.7 Histidine utilization repressor compare
PP_2322 -0.8 -5.4 Major outer membrane lipoprotein compare
PP_0565 -0.8 -1.9 putative enzyme compare
PP_3946 -0.8 -0.9 HTH-type transcriptional repressor NicR compare
PP_1454 -0.8 -1.6 conserved protein of unknown function compare
PP_5217 -0.8 -6.9 Polyphosphate kinase compare
PP_4993 -0.8 -2.3 Glutathione synthetase compare
PP_4098 -0.8 -1.1 UvrABC system protein C compare
PP_0630 -0.8 -0.6 DNA gyrase inhibitor YacG compare
PP_0261 -0.8 -3.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_5500 -0.8 -2.9 protein of unknown function compare
PP_2499 -0.8 -0.9 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Fructose in Pseudomonas putida KT2440

For carbon source D-Fructose across organisms