Experiment set29IT037 for Pseudomonas putida KT2440

Compare to:

Sebacic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +3.2 22.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +3.0 19.6 Sensor protein GacS compare
PP_1214 +1.9 3.7 putative transcriptional regulatory protein compare
PP_1055 +1.7 2.3 Type II secretion pathway protein GspN compare
PP_2806 +1.6 6.6 Transcriptional regulator, TetR family compare
PP_5583 +1.5 3.0 conserved protein of unknown function compare
PP_0276 +1.3 2.8 Transcriptional regulator, Cro/CI family compare
PP_2889 +1.3 5.8 putative Transmembrane regulator PrtR compare
PP_4642 +1.3 2.4 Cyclic diguanosine monophosphate-binding protein compare
PP_1729 +1.3 1.8 conserved protein of unknown function compare
PP_0804 +1.2 6.9 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0574 +1.2 10.8 DNA-binding response regulator, LuxR family compare
PP_4204 +1.2 5.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4373 +1.2 9.0 Transcriptional regulator FleQ compare
PP_0806 +1.2 10.8 putative Surface adhesion protein compare
PP_1623 +1.1 7.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_1774 +1.1 2.2 conserved exported protein of unknown function compare
PP_3916 +1.1 4.9 conserved protein of unknown function compare
PP_4937 +1.1 5.8 toluene tolerance protein compare
PP_5248 +1.1 1.6 putative hydrolase compare
PP_1268 +1.1 3.0 putative HtrA suppressor protein sohA compare
PP_0803 +1.1 7.0 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4902 +1.1 2.3 Oligoribonuclease compare
PP_5453 +1.1 2.9 conserved protein of unknown function compare
PP_4720 +1.0 2.9 putative RNA binding protein compare
PP_3835 +1.0 6.1 Sensory box histidine kinase compare
PP_2683 +1.0 2.6 putative sensory box histidine kinase/response regulator compare
PP_5145 +1.0 8.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0962 +1.0 5.0 toluene-tolerance protein compare
PP_4171 +1.0 7.2 conserved exported protein of unknown function compare
PP_4682 +1.0 3.3 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_1632 +1.0 1.9 conserved protein of unknown function compare
PP_0805 +0.9 6.4 Outer membrane efflux protein compare
PP_0794 +0.9 4.1 1-phosphofructokinase monomer compare
PP_0166 +0.9 7.5 HlyD family secretion protein compare
PP_2044 +0.9 1.2 conserved inner membrane protein of unknown function compare
PP_3903 +0.9 1.8 conserved protein of unknown function compare
PP_5533 +0.9 1.5 conserved protein of unknown function compare
PP_2147 +0.9 3.5 conserved exported protein of unknown function compare
PP_0167 +0.8 7.2 Toxin secretion ATP-binding protein compare
PP_0274 +0.8 0.7 putative transcriptional regulator containing HTH domain compare
PP_0960 +0.8 3.6 phospholipid ABC transporter binding protein compare
PP_4814 +0.8 2.6 ATP-dependent protease La domain protein compare
PP_3434 +0.8 2.0 conserved protein of unknown function compare
PP_0165 +0.8 6.3 GGDEF domain protein compare
PP_1208 +0.8 1.4 conserved protein of unknown function, SlyX family compare
PP_5546 +0.8 1.3 conserved protein of unknown function compare
PP_1824 +0.8 1.6 Smr domain protein compare
PP_3018 +0.8 2.2 conserved protein of unknown function compare
PP_3064 +0.8 3.3 Phage tail protein compare
PP_4519 +0.8 5.9 Agglutination protein compare
PP_4162 +0.8 2.4 conserved membrane protein of unknown function compare
PP_0168 +0.8 6.9 putative surface adhesion protein compare
PP_3519 +0.7 0.9 putative Lipoprotein compare
PP_0792 +0.7 4.2 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_4629 +0.7 3.5 Sensory box protein compare
PP_2148 +0.7 5.3 transcription-repair coupling factor compare
PP_5717 +0.7 1.1 conserved protein of unknown function compare
PP_1938 +0.7 1.9 conserved protein of unknown function compare
PP_0630 +0.7 0.7 DNA gyrase inhibitor YacG compare
PP_4734 +0.7 4.5 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_2163 +0.7 4.7 VacJ lipoprotein compare
PP_4419 +0.7 1.2 transposase compare
PP_1655 +0.7 3.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5705 +0.7 0.6 protein of unknown function compare
PP_4785 +0.7 3.2 conserved exported protein of unknown function compare
PP_2280 +0.7 1.2 conserved protein of unknown function compare
PP_5058 +0.7 4.1 Carboxy-terminal-processing protease compare
PP_0958 +0.7 3.3 phospholipid ABC transporter ATP-binding subunit compare
PP_0959 +0.7 1.9 phospholipid ABC transporter compare
PP_5267 +0.7 1.5 putative cytochrome c5 compare
PP_5052 +0.7 3.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0839 +0.7 1.6 tRNA Cm32/Um32 methyltransferase compare
PP_1004 +0.7 1.1 conserved protein of unknown function compare
PP_2269 +0.7 2.5 putative N-acetylmuramoyl-L-alanine amidase compare
PP_0673 +0.6 1.2 conserved protein of unknown function compare
PP_1788 +0.6 1.4 conserved protein of unknown function compare
PP_1656 +0.6 4.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_2907 +0.6 2.0 DNA-binding response regulator compare
PP_1941 +0.6 3.4 conserved protein of unknown function compare
PP_3646 +0.6 3.1 Aldehyde dehydrogenase family protein compare
PP_3473 +0.6 2.1 curli secretion and assembly outer membrane associated component compare
PP_1008 +0.6 1.0 RNA polymerase subunit sigma-24 compare
PP_0948 +0.6 1.4 Phosphocarrier protein HPr compare
PP_5714 +0.6 1.8 conserved protein of unknown function compare
PP_4136 +0.6 0.9 Transcriptional regulator, LuxR family compare
PP_3400 +0.6 3.2 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_5580 +0.6 0.9 protein of unknown function compare
PP_0345 +0.6 2.5 putative Heptose kinase WapP compare
PP_4622 +0.6 1.5 Hmg transcriptional repressor compare
PP_0961 +0.6 3.8 toluene tolerance protein compare
PP_0809 +0.6 4.1 disulfide bond formation protein B compare
PP_4254 +0.6 1.5 conserved protein of unknown function compare
PP_5582 +0.6 0.7 conserved protein of unknown function compare
PP_2105 +0.6 2.0 conserved protein of unknown function compare
PP_4726 +0.6 1.2 Chaperone protein DnaJ compare
PP_0125 +0.6 1.6 putative cytochrome c-type protein compare
PP_0628 +0.6 1.4 conserved protein of unknown function compare
PP_5631 +0.6 1.7 protein of unknown function compare
PP_5359 +0.5 1.5 CobW/P47K family protein compare
PP_0643 +0.5 1.2 protein of unknown function compare
PP_4994 +0.5 2.3 conserved protein of unknown function compare
PP_2360 +0.5 1.7 putative type 1 pili subunit CsuA/B protein compare
PP_0086 +0.5 0.8 conserved protein of unknown function compare
PP_1609 +0.5 1.1 conserved protein of unknown function compare
PP_5206 +0.5 2.5 putative translation-related protein compare
PP_2415 +0.5 3.0 putative acetyltransferase, GNAT family compare
PP_4669 +0.5 1.7 OmpA family protein compare
PP_3474 +0.5 2.7 putative Curli fiber protein CsgE compare
PP_4944 +0.5 1.7 Carbamoyltransferase compare
PP_3487 +0.5 1.2 conserved exported protein of unknown function compare
PP_1979 +0.5 1.3 putative Hydrolase compare
PP_3238 +0.5 1.8 putative Transcriptional regulator PyrR compare
PP_3341 +0.5 2.1 nickel-responsive regulator compare
PP_1898 +0.5 1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5324 +0.5 1.5 Response regulator compare
PP_2003 +0.5 1.8 conserved protein of unknown function compare
PP_1761 +0.5 3.8 diguanylate cyclase with phosphodiesterase domain compare
PP_4386 +0.5 2.8 flagellar basal-body rod protein FlgF compare
PP_5143 +0.5 1.2 conserved membrane protein of unknown function compare
PP_5100 +0.5 2.3 dITP/XTP pyrophosphatase compare
PP_1569 +0.5 2.1 conserved protein of unknown function compare
PP_3128 +0.5 3.5 putative Exopolysaccharide biosynthesis/transport protein compare
PP_0516 +0.5 2.5 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_3384 +0.5 1.4 gluconate 2-dehydrogenase gamma subunit compare
PP_0150 +0.5 1.7 conserved exported protein of unknown function compare
PP_3034 +0.5 1.1 putative Regulator protein compare
PP_1113 +0.5 3.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3110 +0.5 1.0 protein of unknown function compare
PP_3135 +0.5 2.9 putative Glycosyl transferase compare
PP_0848 +0.5 0.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1364 +0.5 3.3 conserved exported protein of unknown function compare
PP_1633 +0.5 1.4 conserved exported protein of unknown function compare
PP_2716 +0.5 1.9 arsenate reductase compare
PP_2945 +0.5 2.5 putative sensor histidine kinase/response regulator compare
PP_1190 +0.5 2.0 conserved protein of unknown function compare
PP_1568 +0.5 0.6 conserved protein of unknown function compare
PP_1349 +0.5 1.7 ATP:cob(I)alamin adenosyltransferase compare
PP_2215 +0.5 2.3 acetyl-CoA acetyltransferase compare
PP_5053 +0.5 2.6 Protein-export protein SecB compare
PP_5610 +0.5 1.1 protein of unknown function compare
PP_1529 +0.5 2.7 Probable cysteine desulfurase compare
PP_t29 +0.5 1.2 tRNA-Ala compare
PP_3625 +0.5 1.7 Transporter, LysE family compare
PP_t13 +0.5 1.6 tRNA-Lys compare
PP_1441 +0.5 2.1 tRNA (cmo5U34)-methyltransferase compare
PP_2373 +0.5 1.5 conserved protein of unknown function compare
PP_1325 +0.5 2.6 putative lipoprotein compare
PP_3380 +0.5 1.4 2-ketogluconate utilization repressor compare
PP_5322 +0.5 2.5 putative metal ion transporter compare
PP_5244 +0.5 1.1 Transcriptional regulator, AraC family compare
PP_2560 +0.4 2.0 alkaline protease secretion transporter ATP-binding protein compare
PP_4150 +0.4 2.3 microcin C transporter - ATP binding subunit compare
PP_3019 +0.4 1.6 Carbon-nitrogen hydrolase family protein compare
PP_1524 +0.4 2.5 23S rRNA m1G745 methyltransferase compare
PP_2971 +0.4 2.4 transposase compare
PP_4836 +0.4 2.1 conserved exported protein of unknown function compare
PP_5552 +0.4 1.3 conserved protein of unknown function compare
PP_2739 +0.4 2.8 putative Sensory box protein compare
PP_2404 +0.4 1.3 conserved exported protein of unknown function compare
PP_1716 +0.4 0.7 Transcriptional regulator, Cro/CI family compare
PP_5471 +0.4 0.8 putative response regulator receiver protein compare
PP_1822 +0.4 1.5 conserved protein of unknown function compare
PP_2204 +0.4 1.9 copper resistance protein B compare
PP_1381 +0.4 0.7 4-carboxymuconolactone decarboxylase compare
PP_1147 +0.4 1.3 conserved protein of unknown function compare
PP_2079 +0.4 2.0 conserved protein of unknown function compare
PP_4372 +0.4 1.6 Sensory box histidine kinase FleS compare
PP_1028 +0.4 2.6 Transcriptional regulator, LysR family compare
PP_0874 +0.4 0.8 conserved protein of unknown function compare
PP_0022 +0.4 1.0 hypothetical protein compare
PP_2124 +0.4 1.3 putative Glycosyl transferase compare
PP_2388 +0.4 1.2 Transporter, LysE family compare
PP_1049 +0.4 1.2 putative protein secretion protein for export compare
PP_1728 +0.4 2.4 conserved membrane protein of unknown function compare
PP_5245 +0.4 2.4 Transcriptional regulator, AraC family compare
PP_2247 +0.4 1.5 putative Endoribonuclease compare
PP_5091 +0.4 1.9 conserved membrane protein of unknown function compare
PP_2318 +0.4 1.3 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_1895 +0.4 1.9 putative ABC transporter - ATP binding subunit compare
PP_3481 +0.4 0.7 conserved exported protein of unknown function compare
PP_3483 +0.4 2.2 putative Type II secretion system protein compare
PP_4957 +0.4 1.8 conserved protein of unknown function compare
PP_5742 +0.4 1.9 putative membrane protein of unknown function compare
PP_3344 +0.4 1.8 nickel ABC transporter permease subunit compare
PP_5600 +0.4 0.8 conserved protein of unknown function compare
PP_1575 +0.4 0.8 conserved protein of unknown function compare
PP_1352 +0.4 1.2 UPF0234 protein PP_1352 compare
PP_3451 +0.4 1.7 conserved exported protein of unknown function compare
PP_3318 +0.4 0.8 conserved protein of unknown function compare
PP_3014 +0.4 0.9 conserved exported protein of unknown function compare
PP_4820 +0.4 1.5 tRNA-dihydrouridine synthase B compare
PP_1557 +0.4 1.7 conserved protein of unknown function compare
PP_4348 +0.4 1.5 putative Cystathionine beta-lyase compare
PP_2595 +0.4 1.6 putative ABC transporter, permease/ATP-binding protein compare
PP_1128 +0.4 0.9 OmpA family protein compare
PP_3056 +0.4 1.5 putative Pyocin R2_PP, tail fiber protein compare
PP_4529 +0.4 1.9 conserved protein of unknown function compare
PP_1417 +0.4 1.3 putative Tricarboxylate transport protein TctB compare
PP_0971 +0.4 1.8 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sebacic acid in Pseudomonas putida KT2440

For carbon source Sebacic acid across organisms