Experiment set28IT046 for Pseudomonas putida KT2440

Compare to:

L-Glutamic acid monopotassium salt monohydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -5.1 -13.7 Carbamoyl-phosphate synthase small chain compare
PP_1988 -5.1 -11.4 3-isopropylmalate dehydrogenase compare
PP_4909 -4.8 -11.1 phosphoserine phosphatase compare
PP_5289 -4.7 -6.4 Acetylglutamate kinase compare
PP_4723 -4.5 -24.4 Carbamoyl-phosphate synthase large chain compare
PP_0967 -4.5 -14.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -4.2 -10.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -4.2 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -4.1 -18.7 Ketol-acid reductoisomerase compare
PP_0083 -4.1 -5.6 tryptophan synthase beta chain compare
PP_1995 -4.1 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0289 -4.0 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -4.0 -8.9 Argininosuccinate lyase compare
PP_5155 -3.9 -6.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0082 -3.9 -7.0 tryptophan synthase alpha chain compare
PP_1079 -3.8 -7.5 Ornithine carbamoyltransferase compare
PP_0966 -3.8 -12.5 Histidinol dehydrogenase compare
PP_1985 -3.8 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_0420 -3.8 -11.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1986 -3.7 -6.1 3-isopropylmalate dehydratase small subunit compare
PP_0422 -3.7 -10.4 Indole-3-glycerol phosphate synthase compare
PP_3511 -3.7 -11.0 Branched-chain-amino-acid aminotransferase compare
PP_4680 -3.7 -15.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -3.6 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5128 -3.6 -11.4 Dihydroxy-acid dehydratase compare
PP_0691 -3.6 -7.6 Glutamate 5-kinase compare
PP_5185 -3.5 -10.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -3.5 -12.9 Argininosuccinate synthase compare
PP_0965 -3.4 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0417 -3.4 -17.8 Anthranilate synthase component 1 compare
PP_0292 -3.3 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5015 -3.3 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4890 -3.1 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5014 -3.0 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -2.9 -8.5 Anthranilate phosphoribosyltransferase compare
PP_5098 -2.8 -10.3 methionine biosynthesis protein MetW compare
PP_1109 -2.6 -14.9 Transcriptional regulator, GntR family compare
PP_2001 -2.6 -13.3 O-succinylhomoserine sulfhydrylase compare
PP_4364 -2.6 -6.7 putative Anti-sigma F factor antagonist compare
PP_1025 -2.5 -9.9 2-isopropylmalate synthase compare
PP_3999 -2.5 -6.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1110 -2.4 -6.8 serine acetyltransferase compare
PP_4910 -2.3 -2.7 conserved protein of unknown function compare
PP_1111 -2.3 -7.9 putative Synthetase compare
PP_5097 -2.3 -13.0 homoserine O-acetyltransferase compare
PP_4999 -2.2 -2.9 dihydroorotase-like protein compare
PP_2390 -2.2 -10.0 Transcriptional regulator, LysR family compare
PP_5303 -2.2 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -2.0 -10.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1066 -2.0 -4.0 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0137 -2.0 -12.6 glutamate/aspartate-proton DAACS transporter compare
PP_4891 -1.9 -5.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1912 -1.9 -7.1 Phosphate acyltransferase compare
PP_0127 -1.9 -9.0 Thiol:disulfide interchange protein compare
PP_2388 -1.9 -6.4 Transporter, LysE family compare
PP_1664 -1.8 -3.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_2370 -1.8 -3.3 conserved protein of unknown function compare
PP_1293 -1.8 -2.1 molybdopterin synthase small subunit compare
PP_1067 -1.8 -12.2 Sensor histidine kinase compare
PP_0164 -1.8 -8.5 conserved protein of unknown function compare
PP_1231 -1.7 -6.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5048 -1.7 -7.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2402 -1.7 -2.7 putative Sensor histidine kinase compare
PP_1216 -1.6 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0339 -1.6 -5.7 Pyruvate dehydrogenase E1 component compare
PP_0787 -1.6 -5.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4799 -1.6 -1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2328 -1.6 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_0735 -1.6 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_5337 -1.5 -3.4 LysR family transcriptional regulator compare
PP_0291 -1.5 -2.5 conserved protein of unknown function compare
PP_1071 -1.5 -7.3 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_3484 -1.4 -4.9 Response regulator receiver protein compare
PP_5047 -1.4 -7.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3821 -1.4 -9.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0809 -1.4 -9.0 disulfide bond formation protein B compare
PP_1493 -1.4 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1702 -1.4 -2.8 Recombination-associated protein RdgC compare
PP_1215 -1.3 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4892 -1.3 -4.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0719 -1.3 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5571 -1.3 -1.8 conserved protein of unknown function compare
PP_5095 -1.3 -1.2 pyrroline-5-carboxylate reductase compare
PP_4004 -1.3 -2.5 DNA translocase FtsK compare
PP_1804 -1.2 -8.4 Glycosyl transferase WbpL compare
PP_4058 -1.2 -8.3 1,4-alpha-glucan branching enzyme compare
PP_1468 -1.2 -2.7 Tyrosine recombinase XerD compare
PP_1779 -1.2 -5.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4940 -1.1 -5.6 Putative glycosyltransferase compare
PP_4964 -1.1 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0914 -1.1 -7.1 GGDEF domain protein compare
PP_5350 -1.1 -4.8 Transcriptional regulator, RpiR family compare
PP_4722 -1.1 -4.4 Transcription elongation factor GreA compare
PP_1802 -1.1 -9.1 glycosyl transferase compare
PP_1439 -1.1 -2.3 conserved exported protein of unknown function compare
PP_1801 -1.0 -7.8 Glycosyl transferase WbpY compare
PP_0393 -1.0 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3307 -1.0 -2.5 conserved protein of unknown function compare
PP_5227 -1.0 -5.6 diaminopimelate decarboxylase compare
PP_4917 -1.0 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1778 -1.0 -4.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1805 -1.0 -8.7 Polysaccharide biosynthesis protein compare
PP_1589 -1.0 -5.5 uridylyltransferase compare
PP_1800 -1.0 -7.4 Oxidoreductase Rmd compare
PP_4804 -0.9 -1.8 RlpA-like lipoprotein compare
PP_1994 -0.9 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_0594 -0.9 -5.1 Transcriptional regulator, TetR family compare
PP_0888 -0.9 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_3505 -0.9 -2.0 conserved protein of unknown function compare
PP_1799 -0.9 -7.7 GDP-mannose 4,6-dehydratase compare
PP_2088 -0.9 -1.8 RNA polymerase sigma factor SigX compare
PP_1780 -0.9 -8.1 putative mannosyltransferase compare
PP_2031 -0.9 -2.1 conserved protein of unknown function compare
PP_1654 -0.9 -2.2 cysteine synthase B compare
PP_1022 -0.9 -3.1 glucose 6-phosphate-1-dehydrogenase compare
PP_4943 -0.8 -1.8 putative Glycosyl transferase compare
PP_5329 -0.8 -2.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4942 -0.8 -2.3 conserved protein of unknown function compare
PP_2337 -0.8 -2.0 aconitate isomerase compare
PP_4531 -0.8 -3.6 conserved exported protein of unknown function compare
PP_1020 -0.8 -2.5 putative glucose-6-phosphate 1-epimerase compare
PP_5007 -0.8 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1055 -0.8 -1.6 Type II secretion pathway protein GspN compare
PP_1783 -0.8 -0.7 dTDP-glucose pyrophosphorylase compare
PP_1186 -0.8 -2.5 two component system DNA-binding transcriptional dual regulator compare
PP_2160 -0.8 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4143 -0.8 -2.8 conserved protein of unknown function compare
PP_1683 -0.8 -2.5 Transcriptional regulator, MarR family compare
PP_0833 -0.8 -2.2 queuine tRNA-ribosyltransferase compare
PP_4126 -0.8 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4481 -0.7 -3.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3519 -0.7 -1.1 putative Lipoprotein compare
PP_3840 -0.7 -1.6 conserved protein of unknown function compare
PP_5001 -0.7 -2.8 protease HslVU, ATPase component compare
PP_5331 -0.7 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_1776 -0.7 -6.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0276 -0.7 -1.2 Transcriptional regulator, Cro/CI family compare
PP_1233 -0.7 -3.2 sulfurtransferase compare
PP_2748 -0.7 -2.0 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5198 -0.7 -1.9 conserved protein of unknown function compare
PP_2820 -0.7 -2.3 HTH-type transcriptional regulator nfxB compare
PP_1062 -0.7 -2.3 MutT/nudix family protein compare
PP_0185 -0.7 -4.5 Positive alginate biosynthesis regulatory protein compare
PP_1309 -0.7 -3.5 conserved exported protein of unknown function compare
PP_4546 -0.7 -2.7 ATP-dependent helicase HrpA compare
PP_1523 -0.7 -2.4 conserved protein of unknown function compare
PP_4289 -0.7 -4.7 conserved membrane protein of unknown function compare
PP_2907 -0.7 -2.1 DNA-binding response regulator compare
PP_4814 -0.7 -2.5 ATP-dependent protease La domain protein compare
PP_1346 -0.7 -3.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4700 -0.7 -2.6 pantothenate synthetase compare
PP_4936 -0.7 -3.8 O-antigen polymerase compare
PP_4938 -0.7 -4.6 putative Glycosyl transferase compare
PP_5748 -0.7 -1.4 cytochrome c heme lyase subunit compare
PP_0152 -0.7 -2.0 conserved exported protein of unknown function compare
PP_2414 -0.7 -0.7 conserved exported protein of unknown function compare
PP_4204 -0.7 -2.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1217 -0.7 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5230 -0.6 -1.9 Tyrosine recombinase XerC compare
PP_0979 -0.6 -2.4 DNA polymerase III subunit chi compare
PP_5216 -0.6 -3.0 exopolyphosphatase compare
PP_0280 -0.6 -2.9 Amino acid ABC transporter, permease protein compare
PP_5322 -0.6 -3.3 putative metal ion transporter compare
PP_4569 -0.6 -1.3 conserved protein of unknown function compare
PP_4789 -0.6 -2.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0630 -0.6 -0.9 DNA gyrase inhibitor YacG compare
PP_2000 -0.6 -1.0 amidophosphoribosyl transferase compare
PP_3924 -0.6 -1.9 conserved protein of unknown function compare
PP_0549 -0.6 -3.1 putative Lipoprotein compare
PP_0063 -0.6 -2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5328 -0.6 -1.6 putative phosphate transport system permease protein compare
PP_4824 -0.6 -2.8 Sensor histidine kinase/response regulator compare
PP_2631 -0.6 -1.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1097 -0.6 -1.0 Methionine--tRNA ligase compare
PP_4502 -0.6 -2.4 putative enzyme compare
PP_1036 -0.6 -2.7 membrane-bound lytic murein transglycosylase F compare
PP_5106 -0.6 -2.0 conserved inner membrane protein compare
PP_1734 -0.6 -0.6 Probable septum site-determining protein MinC compare
PP_1112 -0.6 -4.0 conserved membrane protein of unknown function compare
PP_1362 -0.6 -1.8 pyruvate kinase II compare
PP_4829 -0.6 -1.8 putative precorrin-3B synthase compare
PP_0607 -0.6 -1.6 putative Type IV pili biogenesis protein FimT compare
PP_2475 -0.6 -2.1 Transcriptional regulator, TetR family compare
PP_5500 -0.6 -1.7 protein of unknown function compare
PP_5225 -0.6 -1.3 frataxin compare
PP_4482 -0.6 -2.6 Transcriptional regulator, AraC family compare
PP_1559 -0.6 -2.2 Holin compare
PP_0852 -0.6 -1.7 Transcriptional regulator, Cro/CI family compare
PP_1164 -0.5 -1.5 Transcriptional regulator, LysR family compare
PP_5167 -0.5 -1.6 conserved hypothetical protein compare
PP_4739 -0.5 -1.3 conserved protein of unknown function compare
PP_3098 -0.5 -0.8 conserved protein of unknown function compare
PP_4223 -0.5 -2.0 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4504 -0.5 -1.5 conserved exported protein of unknown function compare
PP_2168 -0.5 -3.7 Transaldolase compare
PP_5233 -0.5 -2.9 ammonium transporter AmtB compare
PP_4213 -0.5 -1.7 putative dipeptidase compare
PP_4342 -0.5 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_5104 -0.5 -3.7 thiazole synthase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas putida KT2440

For nitrogen source L-Glutamic acid monopotassium salt monohydrate across organisms