Experiment set27IT057 for Pseudomonas putida KT2440

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_5015 -7.2 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -6.9 -9.5 Branched-chain-amino-acid aminotransferase compare
PP_1988 -6.6 -10.0 3-isopropylmalate dehydrogenase compare
PP_1985 -6.5 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_1079 -6.4 -8.8 Ornithine carbamoyltransferase compare
PP_5048 -6.4 -8.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5075 -6.2 -15.6 glutamate synthase (NADPH) beta subunit compare
PP_5076 -6.2 -23.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_0290 -6.1 -10.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -6.0 -18.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -5.9 -14.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0082 -5.9 -7.0 tryptophan synthase alpha chain compare
PP_0292 -5.9 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -5.8 -6.9 tryptophan synthase beta chain compare
PP_4678 -5.7 -18.9 Ketol-acid reductoisomerase compare
PP_1986 -5.7 -5.5 3-isopropylmalate dehydratase small subunit compare
PP_1995 -5.6 -12.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -5.5 -15.3 Histidinol dehydrogenase compare
PP_4723 -5.5 -15.8 Carbamoyl-phosphate synthase large chain compare
PP_0422 -5.4 -9.0 Indole-3-glycerol phosphate synthase compare
PP_0421 -5.4 -8.6 Anthranilate phosphoribosyltransferase compare
PP_2371 -5.3 -8.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1088 -5.3 -13.3 Argininosuccinate synthase compare
PP_0967 -5.3 -14.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0986 -5.2 -8.6 aminomethyltransferase conserved
PP_5097 -5.1 -16.5 homoserine O-acetyltransferase compare
PP_1231 -5.0 -9.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5185 -5.0 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4724 -5.0 -9.0 Carbamoyl-phosphate synthase small chain compare
PP_0417 -5.0 -20.2 Anthranilate synthase component 1 compare
PP_2168 -5.0 -15.2 Transaldolase compare
PP_4679 -4.9 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -4.9 -6.7 Acetylglutamate kinase compare
PP_0289 -4.9 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -4.8 -8.7 Argininosuccinate lyase compare
PP_2001 -4.8 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_5098 -4.8 -11.7 methionine biosynthesis protein MetW compare
PP_0988 -4.7 -14.8 glycine dehydrogenase conserved
PP_5014 -4.6 -6.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0691 -4.6 -5.4 Glutamate 5-kinase compare
PP_0997 -4.5 -11.8 Sigma-54 dependent transcriptional regulator/sensory box protein conserved
PP_5303 -4.5 -8.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5128 -4.4 -10.7 Dihydroxy-acid dehydratase compare
PP_4890 -4.3 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -4.3 -16.1 pyruvate carboxylase subunit A compare
PP_4696 -4.2 -8.0 Nitrogen regulation protein NR(I) compare
PP_0965 -4.1 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -4.1 -8.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2328 -4.0 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_0989 -4.0 -4.9 glycine cleavage system H protein 1 conserved
PP_0787 -3.8 -5.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0339 -3.7 -2.6 Pyruvate dehydrogenase E1 component compare
PP_5047 -3.7 -8.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2088 -3.5 -4.8 RNA polymerase sigma factor SigX compare
PP_1025 -3.5 -9.8 2-isopropylmalate synthase compare
PP_1589 -3.5 -12.7 uridylyltransferase compare
PP_4901 -3.5 -7.4 conserved inner membrane protein conserved
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_2370 -3.2 -4.6 conserved protein of unknown function compare
PP_5346 -3.1 -9.4 pyruvate carboxylase subunit B compare
PP_5348 -3.0 -9.8 Transcriptional regulator, LysR family compare
PP_2378 -3.0 -2.9 Fe/S biogenesis protein NfuA compare
PP_2327 -2.8 -8.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4364 -2.7 -5.9 putative Anti-sigma F factor antagonist compare
PP_4700 -2.6 -4.5 pantothenate synthetase compare
PP_0846 -2.5 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_1022 -2.5 -7.3 glucose 6-phosphate-1-dehydrogenase compare
PP_1654 -2.5 -5.8 cysteine synthase B compare
PP_4126 -2.5 -3.3 NADH-quinone oxidoreductase subunit I compare
PP_4693 -2.3 -6.0 RNA polymerase-binding transcription factor DksA compare
PP_0291 -2.2 -2.0 conserved protein of unknown function compare
PP_1217 -2.1 -5.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4964 -2.0 -3.2 D-erythrose 4-phosphate dehydrogenase compare
PP_3790 -1.9 -10.7 diaminopimelate epimerase compare
PP_0362 -1.9 -13.5 Biotin synthase compare
PP_2388 -1.8 -6.8 Transporter, LysE family compare
PP_1233 -1.6 -5.4 sulfurtransferase compare
PP_1362 -1.6 -4.3 pyruvate kinase II compare
PP_4004 -1.6 -4.3 DNA translocase FtsK compare
PP_5104 -1.6 -9.1 thiazole synthase compare
PP_4782 -1.6 -5.3 Phosphomethylpyrimidine kinase compare
PP_5350 -1.5 -4.7 Transcriptional regulator, RpiR family compare
PP_4828 -1.5 -2.4 Precorrin-8X methylmutase compare
PP_5227 -1.5 -6.8 diaminopimelate decarboxylase compare
PP_1734 -1.5 -2.7 Probable septum site-determining protein MinC compare
PP_4480 -1.5 -9.6 arginine N-succinyltransferase, subunit alpha compare
PP_1994 -1.4 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_4684 -1.4 -8.0 conserved protein of unknown function with kinase-like domain compare
PP_1912 -1.4 -6.1 Phosphate acyltransferase compare
PP_1366 -1.3 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0393 -1.3 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3376 -1.3 -5.2 putative phosphonate dehydrogenase compare
PP_1127 -1.2 -8.0 Carboxylesterase conserved
PP_1872 -1.2 -7.9 glutamate-pyruvate aminotransferase compare
PP_1468 -1.2 -3.3 Tyrosine recombinase XerD compare
PP_0735 -1.2 -2.4 molybdopterin-synthase adenylyltransferase compare
PP_1656 -1.1 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_2390 -1.1 -5.6 Transcriptional regulator, LysR family compare
PP_1426 -1.1 -9.0 L-aspartate oxidase compare
PP_1733 -1.1 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4829 -1.1 -3.4 putative precorrin-3B synthase compare
PP_4917 -1.1 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4922 -1.1 -8.0 Phosphomethylpyrimidine synthase compare
PP_5090 -1.1 -2.6 putative cell division protein compare
PP_4799 -1.1 -0.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4532 -1.1 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4984 -1.1 -7.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1216 -1.0 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4124 -1.0 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_1128 -1.0 -2.2 OmpA family protein compare
PP_1493 -1.0 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1783 -1.0 -1.6 dTDP-glucose pyrophosphorylase compare
PP_0363 -0.9 -7.3 8-amino-7-oxononanoate synthase compare
PP_1676 -0.9 -4.3 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4131 -0.9 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_4910 -0.9 -2.1 conserved protein of unknown function compare
PP_1664 -0.9 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4098 -0.9 -1.5 UvrABC system protein C compare
PP_5203 -0.9 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_1681 -0.9 -6.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5233 -0.9 -5.7 ammonium transporter AmtB compare
PP_0365 -0.9 -6.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4129 -0.9 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0127 -0.9 -4.8 Thiol:disulfide interchange protein compare
PP_4942 -0.9 -1.7 conserved protein of unknown function compare
PP_2414 -0.9 -1.4 conserved exported protein of unknown function compare
PP_0364 -0.9 -6.1 pimeloyl-[acp] methyl ester esterase compare
PP_1348 -0.8 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4895 -0.8 -2.2 tRNA dimethylallyltransferase compare
PP_5217 -0.8 -7.3 Polyphosphate kinase compare
PP_0995 -0.8 -5.2 conserved membrane protein of unknown function compare
PP_1677 -0.8 -3.4 Adenosyl-cobyric acid synthase compare
PP_2345 -0.8 -2.8 conserved exported protein of unknown function compare
PP_4792 -0.8 -3.0 conserved exported protein of unknown function compare
PP_5628 -0.8 -1.3 conserved protein of unknown function compare
PP_3248 -0.8 -1.3 Dyp-type peroxidase family protein compare
PP_3378 -0.8 -2.3 putative 2-ketogluconokinase compare
PP_0987 -0.8 -3.0 L-serine dehydratase compare
PP_2433 -0.8 -1.4 conserved protein of unknown function compare
PP_3481 -0.8 -2.0 conserved exported protein of unknown function compare
PP_4803 -0.8 -4.6 D-alanyl-D-alanine carboxypeptidase compare
PP_4695 -0.8 -5.1 Sensory box histidine kinase compare
PP_0366 -0.8 -3.8 dethiobiotin synthetase compare
PP_3409 -0.8 -2.2 putative Cobalamin biosynthesis protein cobE compare
PP_2302 -0.8 -4.2 DNA-binding, ATP-dependent protease compare
PP_3506 -0.8 -3.5 Magnesium chelatase, subunit ChII compare
PP_2375 -0.7 -5.9 cobalamin-dependent methionine synthase compare
PP_3507 -0.7 -5.6 Aerobic cobaltochelatase subunit CobN compare
PP_3508 -0.7 -2.9 Protein CobW compare
PP_0963 -0.7 -1.4 putative BolA family protein compare
PP_1675 -0.7 -4.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0425 -0.7 -2.9 conserved protein of unknown function compare
PP_1215 -0.7 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_2217 -0.7 -2.3 enoyl-CoA hydratase compare
PP_1439 -0.7 -2.0 conserved exported protein of unknown function compare
PP_5507 -0.7 -1.6 protein of unknown function compare
PP_4058 -0.7 -4.7 1,4-alpha-glucan branching enzyme compare
PP_2525 -0.7 -3.3 conserved protein of unknown function compare
PP_5621 -0.7 -2.4 protein of unknown function compare
PP_3789 -0.7 -3.2 putative Efflux transporter compare
PP_0630 -0.7 -1.2 DNA gyrase inhibitor YacG compare
PP_4073 -0.7 -2.4 conserved exported protein of unknown function compare
PP_1672 -0.6 -3.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1679 -0.6 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5073 -0.6 -1.2 conserved exported protein of unknown function compare
PP_4832 -0.6 -2.2 Precorrin-6x reductase compare
PP_5327 -0.6 -1.3 putative phosphate ABC transporter, permease subunit compare
PP_4827 -0.6 -4.6 Precorrin-2 C(20)-methyltransferase compare
PP_5331 -0.6 -1.5 Long-chain acyl-CoA thioester hydrolase compare
PP_5230 -0.6 -2.1 Tyrosine recombinase XerC compare
PP_4831 -0.6 -3.3 putative cobalt-precorrin-6A synthase compare
PP_0164 -0.6 -2.9 conserved protein of unknown function compare
PP_5216 -0.6 -1.1 exopolyphosphatase compare
PP_4880 -0.6 -2.1 exoribonuclease R compare
PP_4909 -0.6 -3.8 phosphoserine phosphatase compare
PP_1513 -0.6 -1.5 Ribosomal RNA small subunit methyltransferase J compare
PP_1208 -0.6 -0.8 conserved protein of unknown function, SlyX family compare
PP_5717 -0.6 -1.9 conserved protein of unknown function compare
PP_0381 -0.6 -3.6 Coenzyme PQQ synthesis protein F compare
PP_1326 -0.6 -1.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1528 -0.6 -1.2 conserved protein of unknown function compare
PP_1605 -0.6 -2.1 Ribonuclease HII compare
PP_1824 -0.6 -0.9 Smr domain protein compare
PP_2929 -0.6 -3.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2031 -0.6 -1.5 conserved protein of unknown function compare
PP_0398 -0.6 -1.9 Thiosulfate sulfurtransferase GlpE compare
PP_4830 -0.6 -2.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_0888 -0.6 -0.7 Photosynthetic apparatus regulatory protein RegA compare
PP_4560 -0.6 -2.4 putative Ribonuclease BN compare
PP_5475 -0.6 -1.1 conserved protein of unknown function compare
PP_3505 -0.5 -1.3 conserved protein of unknown function compare
PP_1829 -0.5 -1.7 Hydrolase, alpha/beta fold family compare
PP_5313 -0.5 -1.9 DNA-binding protein HU-alpha compare
PP_4179 -0.5 -3.9 Chaperone protein HtpG compare
PP_5575 -0.5 -1.8 conserved protein of unknown function compare
PP_2750 -0.5 -2.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3102 -0.5 -2.2 conserved protein of unknown function compare
PP_0376 -0.5 -3.7 Coenzyme PQQ synthesis protein E compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Glycine in Pseudomonas putida KT2440

For nitrogen source Glycine across organisms