Experiment set27IT022 for Pseudomonas putida KT2440

Compare to:

2,6-diaminopimelic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1778 -3.0 -6.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0082 -2.7 -6.7 tryptophan synthase alpha chain compare
PP_0293 -2.7 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0083 -2.6 -8.6 tryptophan synthase beta chain compare
PP_5048 -2.5 -6.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4004 -2.4 -4.9 DNA translocase FtsK compare
PP_0290 -2.4 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1328 -2.3 -4.6 Protein MraZ compare
PP_1779 -2.2 -6.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1988 -2.1 -9.2 3-isopropylmalate dehydrogenase compare
PP_4058 -2.1 -11.4 1,4-alpha-glucan branching enzyme compare
PP_1079 -1.9 -8.9 Ornithine carbamoyltransferase compare
PP_4678 -1.9 -12.8 Ketol-acid reductoisomerase compare
PP_0289 -1.9 -6.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4724 -1.8 -5.3 Carbamoyl-phosphate synthase small chain compare
PP_1589 -1.8 -7.5 uridylyltransferase compare
PP_4723 -1.8 -11.3 Carbamoyl-phosphate synthase large chain compare
PP_1215 -1.8 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4680 -1.8 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -1.7 -9.5 Transaldolase compare
PP_4060 -1.7 -11.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1995 -1.7 -8.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -1.6 -10.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1198 -1.6 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4909 -1.6 -6.4 phosphoserine phosphatase compare
PP_0417 -1.6 -11.8 Anthranilate synthase component 1 compare
PP_5047 -1.6 -5.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5076 -1.6 -11.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_5185 -1.6 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0691 -1.5 -2.9 Glutamate 5-kinase compare
PP_2402 -1.5 -2.9 putative Sensor histidine kinase compare
PP_3511 -1.5 -7.1 Branched-chain-amino-acid aminotransferase compare
PP_5128 -1.5 -7.1 Dihydroxy-acid dehydratase compare
PP_5075 -1.4 -10.3 glutamate synthase (NADPH) beta subunit compare
PP_0967 -1.4 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5098 -1.4 -7.2 methionine biosynthesis protein MetW compare
PP_0421 -1.4 -6.7 Anthranilate phosphoribosyltransferase compare
PP_0422 -1.4 -4.1 Indole-3-glycerol phosphate synthase compare
PP_1985 -1.4 -4.8 3-isopropylmalate dehydratase large subunit compare
PP_0966 -1.4 -8.4 Histidinol dehydrogenase compare
PP_1986 -1.4 -2.4 3-isopropylmalate dehydratase small subunit compare
PP_0833 -1.3 -2.5 queuine tRNA-ribosyltransferase compare
PP_4693 -1.3 -4.7 RNA polymerase-binding transcription factor DksA compare
PP_4363 -1.3 -7.5 Sensor histidine kinase/response regulator compare
PP_4943 -1.3 -2.5 putative Glycosyl transferase compare
PP_1088 -1.3 -7.2 Argininosuccinate synthase compare
PP_3098 -1.3 -1.9 conserved protein of unknown function compare
PP_5095 -1.3 -1.5 pyrroline-5-carboxylate reductase compare
PP_0184 -1.3 -5.1 Argininosuccinate lyase compare
PP_5155 -1.3 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0185 -1.3 -7.1 Positive alginate biosynthesis regulatory protein compare
PP_4364 -1.3 -5.9 putative Anti-sigma F factor antagonist compare
PP_4679 -1.2 -5.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1493 -1.2 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0719 -1.2 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5289 -1.2 -3.7 Acetylglutamate kinase compare
PP_0292 -1.2 -2.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1022 -1.2 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_1217 -1.1 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2088 -1.1 -3.5 RNA polymerase sigma factor SigX compare
PP_5097 -1.1 -7.4 homoserine O-acetyltransferase compare
PP_5217 -1.1 -8.7 Polyphosphate kinase compare
PP_3821 -1.1 -5.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0225 -1.0 -5.8 sulfur compound ABC transporter - ATP-binding subunit compare
PP_1734 -1.0 -1.9 Probable septum site-determining protein MinC compare
PP_2307 -1.0 -2.2 conserved protein of unknown function compare
PP_1654 -1.0 -3.2 cysteine synthase B compare
PP_3505 -1.0 -2.1 conserved protein of unknown function compare
PP_5652 -1.0 -2.2 conserved protein of unknown function, phage origin compare
PP_1408 -1.0 -4.6 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_0383 -1.0 -7.0 Lysine 2-monooxygenase compare
PP_5014 -0.9 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4199 -0.9 -1.2 putative Lipoprotein compare
PP_4999 -0.9 -0.9 dihydroorotase-like protein compare
PP_2001 -0.9 -5.2 O-succinylhomoserine sulfhydrylase compare
PP_5114 -0.9 -1.0 putative adenine methyltransferase compare
PP_0226 -0.9 -5.9 sulfur compound ABC transporter - permease subunit compare
PP_1025 -0.9 -6.7 2-isopropylmalate synthase compare
PP_0227 -0.9 -6.8 periplasmic cystine-binding protein compare
PP_3506 -0.9 -2.7 Magnesium chelatase, subunit ChII compare
PP_3810 -0.8 -1.4 conserved protein of unknown function compare
PP_0164 -0.8 -3.7 conserved protein of unknown function compare
PP_4338 -0.8 -5.4 Chemotaxis histidine kinase CheA compare
PP_3508 -0.8 -2.9 Protein CobW compare
PP_1468 -0.8 -0.8 Tyrosine recombinase XerD compare
PP_3892 -0.8 -1.8 conserved protein of unknown function compare
PP_5500 -0.8 -2.7 protein of unknown function compare
PP_4910 -0.8 -1.2 conserved protein of unknown function compare
PP_4977 -0.8 -5.8 5,10-methylenetetrahydrofolate reductase compare
PP_2302 -0.8 -3.5 DNA-binding, ATP-dependent protease compare
PP_2328 -0.8 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -0.8 -3.0 Nitrogen regulation protein NR(I) compare
PP_0002 -0.8 -4.2 probable chromosome partition protein compare
PP_1783 -0.8 -1.2 dTDP-glucose pyrophosphorylase compare
PP_3105 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_5017 -0.8 -1.4 Sec-independent protein translocase protein TatB compare
PP_5093 -0.7 -1.4 twitching motility protein compare
PP_4890 -0.7 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0673 -0.7 -0.9 conserved protein of unknown function compare
PP_4799 -0.7 -0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1122 -0.7 -1.7 OmpA family protein compare
PP_5507 -0.7 -2.4 protein of unknown function compare
PP_4392 -0.7 -4.3 chemotaxis protein methyltransferase compare
PP_1142 -0.7 -1.2 conserved protein of unknown function compare
PP_3241 -0.7 -1.2 conserved exported protein of unknown function compare
PP_2580 -0.7 -2.7 conserved protein of unknown function compare
PP_0834 -0.7 -1.5 Sec translocation complex subunit YajC compare
PP_0273 -0.7 -2.3 conserved protein of unknown function compare
PP_4273 -0.6 -1.0 Transcriptional regulator, MerR family compare
PP_0003 -0.6 -2.0 16S RNA methyltransferase compare
PP_2849 -0.6 -3.2 urease accessory protein compare
PP_4477 -0.6 -3.5 N-succinylarginine dihydrolase compare
PP_0965 -0.6 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4671 -0.6 -2.7 conserved exported protein of unknown function compare
PP_4340 -0.6 -2.1 response regulator for chemotactic signal transduction compare
PP_5230 -0.6 -2.2 Tyrosine recombinase XerC compare
PP_1269 -0.6 -0.9 Universal stress protein family compare
PP_2370 -0.6 -1.3 conserved protein of unknown function compare
PP_1906 -0.6 -1.8 ribosomal large subunit pseudouridine synthase C compare
PP_5227 -0.6 -2.3 diaminopimelate decarboxylase compare
PP_5600 -0.6 -2.2 conserved protein of unknown function compare
PP_4505 -0.6 -3.4 Sensor histidine kinase compare
PP_5202 -0.6 -1.7 putative cell division protein compare
PP_0683 -0.6 -1.5 conserved protein of unknown function compare
PP_1553 -0.6 -1.0 conserved protein of unknown function compare
PP_4632 -0.6 -2.8 dihydrofolate reductase / dihydromonapterin reductase compare
PP_4101 -0.6 -3.3 Acetyltransferase, GNAT family compare
PP_4122 -0.6 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0377 -0.6 -1.2 coenzyme PQQ synthesis protein D compare
PP_2333 -0.6 -2.5 GntR family transcriptional regulator compare
PP_3484 -0.6 -2.3 Response regulator receiver protein compare
PP_4556 -0.6 -1.9 conserved protein of unknown function compare
PP_3880 -0.6 -1.3 conserved exported protein of unknown function compare
PP_5233 -0.6 -3.5 ammonium transporter AmtB compare
PP_5279 -0.6 -1.7 conserved protein of unknown function compare
PP_4362 -0.5 -2.5 conserved protein of unknown function compare
PP_1346 -0.5 -2.6 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4482 -0.5 -1.7 Transcriptional regulator, AraC family compare
PP_0995 -0.5 -2.9 conserved membrane protein of unknown function compare
PP_2348 -0.5 -3.2 Sensor histidine kinase compare
PP_0007 -0.5 -2.0 conserved hypothetical protein compare
PP_4159 -0.5 -1.4 Potassium-transporting ATPase C chain compare
PP_5644 -0.5 -1.8 conserved membrane protein of unknown function compare
PP_1892 -0.5 -1.9 conserved protein of unknown function compare
PP_5055 -0.5 -1.8 Sulfurtransferase compare
PP_1742 -0.5 -1.8 conserved inner membrane protein of unknown function compare
PP_3488 -0.5 -2.2 Sco1/SenC family protein compare
PP_5232 -0.5 -1.4 conserved protein of unknown function compare
PP_1575 -0.5 -1.1 conserved protein of unknown function compare
PP_0565 -0.5 -2.2 putative enzyme compare
PP_1096 -0.5 -1.8 putative electron transport complex protein compare
PP_2513 -0.5 -1.2 4-oxalomesaconate tautomerase compare
PP_2326 -0.5 -3.0 Universal stress protein compare
PP_1352 -0.5 -1.5 UPF0234 protein PP_1352 compare
PP_5179 -0.5 -3.6 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_2253 -0.5 -1.6 Transcriptional regulator, GntR family compare
PP_2794 -0.5 -1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3328 -0.5 -1.2 putative Ring-cleaving dioxygenase compare
PP_1994 -0.5 -0.8 tRNA pseudouridine (38-40)synthase compare
PP_3378 -0.5 -1.2 putative 2-ketogluconokinase compare
PP_1216 -0.5 -0.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1038 -0.5 -1.1 conserved protein of unknown function compare
PP_4268 -0.5 -1.0 nucleoid-associated broad specificity regulator compare
PP_5465 -0.5 -2.8 conserved protein of unknown function compare
PP_3999 -0.5 -2.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3063 -0.5 -2.5 Pyocin R2_PP, tail formation protein compare
PP_5003 -0.5 -3.5 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_2714 -0.5 -3.0 Sensor histidine kinase compare
PP_1968 -0.5 -3.1 TetR family transcriptional regulator compare
PP_4824 -0.5 -2.3 Sensor histidine kinase/response regulator compare
PP_4223 -0.5 -0.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3541 -0.5 -1.0 Transporter, MgtC family compare
PP_2976 -0.5 -1.1 putative transposase compare
PP_0878 -0.5 -2.5 dipeptide ABC transporter, binding subunit compare
PP_1656 -0.5 -3.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_5350 -0.5 -1.4 Transcriptional regulator, RpiR family compare
PP_1491 -0.5 -3.2 CheW domain protein compare
PP_4066 -0.5 -1.4 methylglutaconyl-CoA hydratase compare
PP_2309 -0.5 -0.9 conserved protein of unknown function compare
PP_0319 -0.5 -0.8 conserved protein of unknown function compare
PP_3102 -0.5 -1.2 conserved protein of unknown function compare
PP_1099 -0.5 -0.9 Cold shock protein CapB compare
PP_3018 -0.5 -2.3 conserved protein of unknown function compare
PP_4320 -0.5 -2.9 cytochrome c-type biogenesis protein compare
PP_5001 -0.5 -1.9 protease HslVU, ATPase component compare
PP_4792 -0.5 -1.2 conserved exported protein of unknown function compare
PP_0195 -0.4 -1.2 conserved protein of unknown function compare
PP_4804 -0.4 -1.1 RlpA-like lipoprotein compare
PP_5508 -0.4 -0.8 conserved protein of unknown function compare
PP_0663 -0.4 -1.8 Transcriptional regulator, AsnC family compare
PP_5167 -0.4 -1.9 conserved hypothetical protein compare
PP_5628 -0.4 -1.8 conserved protein of unknown function compare
PP_5633 -0.4 -1.4 conserved protein of unknown function compare
PP_2371 -0.4 -1.9 Sulphite reductase hemoprotein, beta subunit compare
PP_3346 -0.4 -1.5 Nickel transporter ATP-binding protein compare
PP_2921 -0.4 -2.6 conserved protein of unknown function compare
PP_2375 -0.4 -3.6 cobalamin-dependent methionine synthase compare
PP_4808 -0.4 -0.6 23S rRNA m3psi1915 methyltransferase compare
PP_3056 -0.4 -2.1 putative Pyocin R2_PP, tail fiber protein compare
PP_4166 -0.4 -1.6 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source 2,6-diaminopimelic acid in Pseudomonas putida KT2440

For nitrogen source 2,6-diaminopimelic acid across organisms