Experiment set25S545 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep C; time point 3

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2590 +1.9 10.5 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2597 +1.8 9.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_2593 +1.7 6.0 Flagellar M-ring protein FliF compare
Pf6N2E2_2592 +1.7 6.0 Flagellar motor switch protein FliG compare
Pf6N2E2_2589 +1.6 3.9 Flagellar protein FliJ compare
Pf6N2E2_2579 +1.5 5.0 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2594 +1.5 7.5 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_5695 +1.5 6.3 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2576 +1.4 8.3 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2628 +1.4 6.3 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_5237 +1.4 2.3 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2577 +1.4 6.6 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2583 +1.3 5.2 Flagellar motor switch protein FliM compare
Pf6N2E2_5093 +1.3 8.7 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_69 +1.3 6.6 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_2675 +1.3 0.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2626 +1.2 5.7 Flagellar L-ring protein FlgH compare
Pf6N2E2_2624 +1.2 5.2 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_5691 +1.2 7.1 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_3171 +1.1 0.9 hypothetical protein compare
Pf6N2E2_5694 +1.1 4.3 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_2627 +1.1 6.1 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_5902 +1.1 2.3 hypothetical protein compare
Pf6N2E2_4276 +1.1 4.7 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2563 +1.1 6.9 FIG00953562: hypothetical protein compare
Pf6N2E2_2573 +1.1 4.7 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_4534 +1.0 2.0 hypothetical protein compare
Pf6N2E2_4139 +1.0 8.4 Integral membrane protein TerC compare
Pf6N2E2_1162 +1.0 1.9 Transmembrane amino acid efflux protein compare
Pf6N2E2_5328 +0.9 2.3 FIG00958649: hypothetical protein compare
Pf6N2E2_5862 +0.9 1.3 Lipoprotein, putative compare
Pf6N2E2_2842 +0.9 0.9 hypothetical protein compare
Pf6N2E2_2585 +0.9 5.6 Flagellar hook-length control protein FliK compare
Pf6N2E2_4996 +0.9 0.7 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_1083 +0.9 0.8 hypothetical protein compare
Pf6N2E2_3641 +0.9 1.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2588 +0.9 1.0 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5697 +0.9 6.2 Flagellar hook protein FlgE compare
Pf6N2E2_367 +0.9 1.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5210 +0.9 0.9 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) compare
Pf6N2E2_4570 +0.8 1.2 Cation/multidrug efflux pump compare
Pf6N2E2_718 +0.8 0.9 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_82 +0.8 3.6 hypothetical protein compare
Pf6N2E2_423 +0.8 1.4 Putative phosphatase YfbT compare
Pf6N2E2_2827 +0.8 0.4 hypothetical protein compare
Pf6N2E2_962 +0.8 0.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_693 +0.8 0.8 hypothetical protein compare
Pf6N2E2_1639 +0.8 2.0 ABC-type phosphate transport system, periplasmic component compare
Pf6N2E2_2321 +0.8 3.8 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_3969 +0.7 3.3 Membrane-fusion protein compare
Pf6N2E2_5956 +0.7 3.6 FIG004453: protein YceG like compare
Pf6N2E2_3638 +0.7 0.6 hypothetical protein compare
Pf6N2E2_5696 +0.7 2.7 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_2584 +0.7 2.5 Flagellar biosynthesis protein FliL compare
Pf6N2E2_2580 +0.7 1.2 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2566 +0.7 3.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3134 +0.7 0.6 hypothetical protein compare
Pf6N2E2_2845 +0.7 4.9 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_3690 +0.7 2.5 Na(+)/H(+) antiporter compare
Pf6N2E2_1808 +0.7 1.9 Transcriptional regulator compare
Pf6N2E2_775 +0.7 1.6 FIG00955061: hypothetical protein compare
Pf6N2E2_586 +0.7 4.5 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_1815 +0.7 2.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_5375 +0.7 1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2625 +0.7 2.1 Flagellar P-ring protein FlgI compare
Pf6N2E2_2852 +0.7 5.0 GGDEF domain/EAL domain protein compare
Pf6N2E2_2596 +0.7 3.8 Flagellar sensor histidine kinase FleS compare
Pf6N2E2_3033 +0.7 0.8 hypothetical protein compare
Pf6N2E2_4153 +0.7 2.5 Sensory box histidine kinase compare
Pf6N2E2_2979 +0.6 2.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_133 +0.6 2.3 hypothetical protein compare
Pf6N2E2_4084 +0.6 5.3 Transcriptional regulator compare
Pf6N2E2_391 +0.6 1.5 hypothetical protein compare
Pf6N2E2_1385 +0.6 1.3 FIG00956261: hypothetical protein compare
Pf6N2E2_5920 +0.6 1.2 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf6N2E2_5413 +0.6 2.3 Glutaredoxin NrdH compare
Pf6N2E2_1742 +0.6 2.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4511 +0.6 3.9 glutamine synthetase family protein compare
Pf6N2E2_5776 +0.6 2.1 hypothetical protein compare
Pf6N2E2_2455 +0.6 3.2 FIG00953957: hypothetical protein compare
Pf6N2E2_4548 +0.6 0.6 hypothetical protein compare
Pf6N2E2_2885 +0.6 4.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2881 +0.6 2.2 Putative cytoplasmic protein compare
Pf6N2E2_2710 +0.6 3.8 FIG00953701: hypothetical protein compare
Pf6N2E2_1718 +0.6 1.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1024 +0.6 0.8 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_6035 +0.6 0.4 alpha/beta hydrolase fold compare
Pf6N2E2_3588 +0.6 0.8 hypothetical protein compare
Pf6N2E2_5799 +0.6 3.0 Patatin compare
Pf6N2E2_2080 +0.6 0.5 hypothetical protein compare
Pf6N2E2_2546 +0.6 0.9 Carbon storage regulator compare
Pf6N2E2_2755 +0.6 1.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3486 +0.6 1.9 FIG00953575: hypothetical protein compare
Pf6N2E2_5568 +0.6 3.3 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) compare
Pf6N2E2_1011 +0.6 0.5 hypothetical protein compare
Pf6N2E2_2502 +0.6 1.8 O-antigen acetylase compare
Pf6N2E2_5261 +0.6 0.8 FIG00956983: hypothetical protein compare
Pf6N2E2_5452 +0.6 1.0 hypothetical protein compare
Pf6N2E2_2092 +0.5 1.8 Cytochrome c5 compare
Pf6N2E2_746 +0.5 1.3 FIG00958097: hypothetical protein compare
Pf6N2E2_148 +0.5 3.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf6N2E2_3093 +0.5 0.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2180 +0.5 2.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_1178 +0.5 0.9 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_4148 +0.5 5.0 Glutamate-aspartate carrier protein compare
Pf6N2E2_2448 +0.5 2.1 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_6060 +0.5 0.5 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_5672 +0.5 1.4 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf6N2E2_1743 +0.5 0.8 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_5174 +0.5 1.3 Glycosyltransferase compare
Pf6N2E2_3726 +0.5 1.9 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_4622 +0.5 2.3 Malonate decarboxylase beta subunit compare
Pf6N2E2_5344 +0.5 2.5 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Pf6N2E2_4367 +0.5 2.9 hypothetical protein compare
Pf6N2E2_4169 +0.5 3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5576 +0.5 0.7 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_5499 +0.5 0.7 hypothetical protein compare
Pf6N2E2_1863 +0.5 1.7 putative dioxygenase hydroxylase component compare
Pf6N2E2_2903 +0.5 1.8 Heme oxygenase HemO, associated with heme uptake compare
Pf6N2E2_1783 +0.5 1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_1431 +0.5 0.5 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_5496 +0.5 0.4 FIG00953991: hypothetical protein compare
Pf6N2E2_4918 +0.5 0.6 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3539 +0.5 0.8 FIG00955840: hypothetical protein compare
Pf6N2E2_4449 +0.5 2.4 Sigma cross-reacting protein 27A compare
Pf6N2E2_1398 +0.5 2.1 Rhodanese-related sulfurtransferase compare
Pf6N2E2_5571 +0.5 0.4 hypothetical protein compare
Pf6N2E2_2262 +0.5 1.4 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_3122 +0.5 0.7 Chemotaxis signal transduction protein compare
Pf6N2E2_4423 +0.5 0.7 FIG00953342: hypothetical protein compare
Pf6N2E2_5621 +0.5 1.7 DNA-binding response regulator compare
Pf6N2E2_1802 +0.5 1.2 polysaccharide deacetylase compare
Pf6N2E2_2418 +0.5 1.4 DNA-binding response regulator, LuxR family compare
Pf6N2E2_1654 +0.5 0.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_888 +0.5 0.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_374 +0.5 1.1 FIG00953249: hypothetical protein compare
Pf6N2E2_1009 +0.5 1.3 Inositol transport system permease protein compare
Pf6N2E2_2981 +0.5 0.4 FIG00956655: hypothetical protein compare
Pf6N2E2_5487 +0.5 1.7 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4128 +0.5 2.3 hypothetical protein compare
Pf6N2E2_2717 +0.5 1.3 putative cytoplasmic protein compare
Pf6N2E2_1838 +0.5 0.6 6-hexanolactone hydrolase compare
Pf6N2E2_2618 +0.5 2.1 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf6N2E2_4359 +0.5 2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5468 +0.5 2.0 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_678 +0.5 2.7 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Pf6N2E2_5169 +0.5 0.8 FIG00954216: hypothetical protein compare
Pf6N2E2_149 +0.5 2.3 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_5620 +0.5 1.9 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf6N2E2_3611 +0.5 0.5 HflC protein compare
Pf6N2E2_671 +0.5 0.7 2-methylaconitate racemase compare
Pf6N2E2_667 +0.5 2.4 Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-) compare
Pf6N2E2_1082 +0.5 0.7 CopG protein compare
Pf6N2E2_3190 +0.5 2.0 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_5246 +0.5 1.6 FIG00955938: hypothetical protein compare
Pf6N2E2_5062 +0.4 2.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf6N2E2_147 +0.4 2.0 Outer membrane component of tripartite multidrug resistance system compare
Pf6N2E2_3210 +0.4 1.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf6N2E2_3840 +0.4 1.5 FIG00956267: hypothetical protein compare
Pf6N2E2_4025 +0.4 0.5 hypothetical protein compare
Pf6N2E2_3705 +0.4 3.1 Putative sugar transporter compare
Pf6N2E2_884 +0.4 1.1 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_624 +0.4 2.7 hypothetical protein PA3071 compare
Pf6N2E2_2716 +0.4 0.9 FIG00954793: hypothetical protein compare
Pf6N2E2_2798 +0.4 2.1 Death on curing protein, Doc toxin compare
Pf6N2E2_3326 +0.4 0.4 hypothetical protein compare
Pf6N2E2_712 +0.4 0.6 hypothetical protein compare
Pf6N2E2_622 +0.4 0.9 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_28 +0.4 0.7 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_3477 +0.4 2.1 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3166 +0.4 2.9 ABC-type sugar transport systems, ATPase components compare
Pf6N2E2_3823 +0.4 2.4 FIG00956533: hypothetical protein compare
Pf6N2E2_767 +0.4 1.8 Fap amyloid fibril major component compare
Pf6N2E2_621 +0.4 1.3 TPR domain protein in aerotolerance operon compare
Pf6N2E2_1103 +0.4 1.2 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Pf6N2E2_3901 +0.4 0.5 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_5569 +0.4 2.8 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) compare
Pf6N2E2_68 +0.4 0.6 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_4263 +0.4 0.9 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_1092 +0.4 1.1 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_4554 +0.4 2.9 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_3989 +0.4 1.4 FIG00958473: hypothetical protein compare
Pf6N2E2_2956 +0.4 2.8 mRNA 3-end processing factor compare
Pf6N2E2_3028 +0.4 1.1 FIG00959937: hypothetical protein compare
Pf6N2E2_4985 +0.4 1.9 Nucleoside-diphosphate-sugar epimerases compare
Pf6N2E2_733 +0.4 1.1 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_1492 +0.4 2.1 No significant database matches compare
Pf6N2E2_449 +0.4 1.3 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_1286 +0.4 1.3 Hemolysin activation/secretion protein associated with VreARI signalling system compare
Pf6N2E2_3790 +0.4 2.3 hypothetical protein compare
Pf6N2E2_128 +0.4 2.0 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system compare
Pf6N2E2_4455 +0.4 2.1 Glutamate transport ATP-binding protein compare
Pf6N2E2_2304 +0.4 2.5 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Pf6N2E2_2942 +0.4 2.2 ATP-dependent helicase DinG/Rad3 compare
Pf6N2E2_5480 +0.4 2.2 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_5236 +0.4 0.9 hypothetical protein compare
Pf6N2E2_5605 +0.4 0.9 FxsA protein compare
Pf6N2E2_687 +0.4 1.3 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_4661 +0.4 1.3 KluA regulatory protein compare
Pf6N2E2_46 +0.4 2.3 membrane protein, putative compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms