Experiment set25S542 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep C; time point 3

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5695 +2.3 10.5 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2597 +2.3 14.0 Flagellar regulatory protein FleQ compare
Pf6N2E2_2628 +2.1 13.3 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2590 +2.1 11.5 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_5086 +2.1 0.8 hypothetical protein compare
Pf6N2E2_2592 +2.1 7.2 Flagellar motor switch protein FliG compare
Pf6N2E2_2594 +2.0 8.9 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2593 +2.0 6.3 Flagellar M-ring protein FliF compare
Pf6N2E2_2583 +2.0 7.1 Flagellar motor switch protein FliM compare
Pf6N2E2_2589 +1.9 6.0 Flagellar protein FliJ compare
Pf6N2E2_2627 +1.9 13.2 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_5691 +1.8 10.0 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2626 +1.8 7.9 Flagellar L-ring protein FlgH compare
Pf6N2E2_2579 +1.8 5.7 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2576 +1.8 10.1 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2585 +1.8 10.7 Flagellar hook-length control protein FliK compare
Pf6N2E2_2577 +1.6 7.9 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_3134 +1.6 1.4 hypothetical protein compare
Pf6N2E2_4153 +1.6 7.4 Sensory box histidine kinase compare
Pf6N2E2_2563 +1.5 9.3 FIG00953562: hypothetical protein compare
Pf6N2E2_2755 +1.5 3.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5697 +1.4 9.4 Flagellar hook protein FlgE compare
Pf6N2E2_5694 +1.4 4.8 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_2624 +1.4 5.3 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_1735 +1.3 2.0 PhnB protein compare
Pf6N2E2_69 +1.3 8.7 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_2625 +1.3 3.4 Flagellar P-ring protein FlgI compare
Pf6N2E2_5840 +1.3 2.6 hypothetical protein compare
Pf6N2E2_2575 +1.2 5.2 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2580 +1.2 2.1 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2573 +1.1 4.8 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_2584 +1.1 4.0 Flagellar biosynthesis protein FliL compare
Pf6N2E2_1860 +1.1 2.0 Ferredoxin, 2Fe-2S compare
Pf6N2E2_2623 +1.0 6.9 Flagellar hook-associated protein FlgK compare
Pf6N2E2_817 +1.0 7.0 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_5589 +0.9 4.0 Sodium-type flagellar protein motY precursor compare
Pf6N2E2_5696 +0.9 2.8 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_5963 +0.9 3.7 lipoprotein, putative compare
Pf6N2E2_4364 +0.9 2.1 Protein YicC compare
Pf6N2E2_1885 +0.9 1.2 Transcriptional regulator, AraC family compare
Pf6N2E2_3753 +0.9 6.4 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_3338 +0.9 0.9 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2965 +0.9 1.3 FIG00955308: hypothetical protein compare
Pf6N2E2_1838 +0.8 1.2 6-hexanolactone hydrolase compare
Pf6N2E2_3326 +0.8 0.8 hypothetical protein compare
Pf6N2E2_99 +0.8 1.4 hypothetical protein compare
Pf6N2E2_2794 +0.8 0.4 putative membrane protein compare
Pf6N2E2_2321 +0.8 4.0 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_1011 +0.8 0.7 hypothetical protein compare
Pf6N2E2_1385 +0.8 2.4 FIG00956261: hypothetical protein compare
Pf6N2E2_724 +0.8 0.5 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_1213 +0.8 1.3 hypothetical protein compare
Pf6N2E2_2180 +0.7 3.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5771 +0.7 4.2 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5237 +0.7 1.0 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2622 +0.7 4.9 Flagellar hook-associated protein FlgL compare
Pf6N2E2_2549 +0.7 0.9 hypothetical protein compare
Pf6N2E2_962 +0.7 0.6 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_3140 +0.7 3.5 FIG00953680: hypothetical protein compare
Pf6N2E2_3588 +0.7 0.9 hypothetical protein compare
Pf6N2E2_2600 +0.7 5.3 Flagellar hook-associated protein FliD compare
Pf6N2E2_2852 +0.7 5.2 GGDEF domain/EAL domain protein compare
Pf6N2E2_2596 +0.7 3.8 Flagellar sensor histidine kinase FleS compare
Pf6N2E2_5902 +0.7 1.2 hypothetical protein compare
Pf6N2E2_4506 +0.7 1.1 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2904 +0.7 2.0 Hypothetical protein DUF454 compare
Pf6N2E2_4405 +0.7 4.6 sensor histidine kinase compare
Pf6N2E2_1808 +0.7 1.8 Transcriptional regulator compare
Pf6N2E2_1639 +0.7 1.7 ABC-type phosphate transport system, periplasmic component compare
Pf6N2E2_5246 +0.6 2.1 FIG00955938: hypothetical protein compare
Pf6N2E2_2568 +0.6 3.2 Flagellar motor rotation protein MotA compare
Pf6N2E2_2712 +0.6 3.3 Permeases of the major facilitator superfamily compare
Pf6N2E2_4527 +0.6 1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_2985 +0.6 3.1 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_2418 +0.6 1.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2602 +0.6 3.3 Flagellin protein FlaA compare
Pf6N2E2_2198 +0.6 3.0 Cytochrome B561, bacterial precursor compare
Pf6N2E2_2842 +0.6 0.6 hypothetical protein compare
Pf6N2E2_1463 +0.6 1.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_631 +0.6 2.4 2-ketogluconate utilization repressor PtxS compare
Pf6N2E2_4935 +0.6 1.4 Fic family protein compare
Pf6N2E2_4224 +0.6 3.0 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_2582 +0.6 0.8 Flagellar motor switch protein FliN compare
Pf6N2E2_3635 +0.6 0.9 FIG00953138: hypothetical protein compare
Pf6N2E2_3226 +0.6 0.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_367 +0.6 0.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2599 +0.6 3.0 Flagellar biosynthesis protein FliS compare
Pf6N2E2_2509 +0.6 2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1701 +0.6 1.0 ABC transporter ATP-binding protein compare
Pf6N2E2_6099 +0.6 0.3 tRNA-Glu-TTC compare
Pf6N2E2_2396 +0.6 1.0 Sensor histidine kinase compare
Pf6N2E2_2674 +0.6 0.3 FIG00953856: hypothetical protein compare
Pf6N2E2_149 +0.6 2.7 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_4499 +0.6 0.5 protein of unknown function DUF86 compare
Pf6N2E2_5806 +0.6 0.6 hypothetical protein compare
Pf6N2E2_5243 +0.6 1.7 hypothetical protein compare
Pf6N2E2_719 +0.6 0.5 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3981 +0.6 4.6 T1SS secreted agglutinin RTX compare
Pf6N2E2_2567 +0.6 3.4 Flagellar motor rotation protein MotB compare
Pf6N2E2_6045 +0.5 0.7 hypothetical protein compare
Pf6N2E2_1706 +0.5 1.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_3791 +0.5 4.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_919 +0.5 0.6 FIG00954373: hypothetical protein compare
Pf6N2E2_2714 +0.5 0.5 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_3313 +0.5 1.1 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_417 +0.5 1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_3486 +0.5 1.7 FIG00953575: hypothetical protein compare
Pf6N2E2_4661 +0.5 1.8 KluA regulatory protein compare
Pf6N2E2_3969 +0.5 2.4 Membrane-fusion protein compare
Pf6N2E2_34 +0.5 1.0 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_4307 +0.5 0.7 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2710 +0.5 3.4 FIG00953701: hypothetical protein compare
Pf6N2E2_2459 +0.5 1.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_712 +0.5 0.7 hypothetical protein compare
Pf6N2E2_4554 +0.5 3.8 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5174 +0.5 1.3 Glycosyltransferase compare
Pf6N2E2_1745 +0.5 1.2 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_4540 +0.5 1.0 hypothetical protein compare
Pf6N2E2_145 +0.5 4.7 putative exported protein compare
Pf6N2E2_2930 +0.5 0.8 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf6N2E2_3717 +0.5 1.5 Lysophospholipid acyltransferase compare
Pf6N2E2_1220 +0.5 0.9 hypothetical protein compare
Pf6N2E2_148 +0.5 2.8 Membrane fusion component of tripartite multidrug resistance system compare
Pf6N2E2_476 +0.5 0.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3713 +0.5 0.7 Acyl carrier protein compare
Pf6N2E2_3493 +0.5 2.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2496 +0.5 0.5 FIG00956575: hypothetical protein compare
Pf6N2E2_2357 +0.5 1.6 Invasion protein iagA compare
Pf6N2E2_3738 +0.5 1.3 General secretion pathway protein L compare
Pf6N2E2_733 +0.5 1.3 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_3638 +0.5 0.4 hypothetical protein compare
Pf6N2E2_2981 +0.5 0.4 FIG00956655: hypothetical protein compare
Pf6N2E2_1308 +0.5 0.7 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
Pf6N2E2_2933 +0.5 0.6 hypothetical protein compare
Pf6N2E2_2722 +0.5 1.3 FIG00954807: hypothetical protein compare
Pf6N2E2_4838 +0.5 3.6 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_4918 +0.5 0.7 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_443 +0.5 0.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5411 +0.5 0.7 FIG00955494: hypothetical protein compare
Pf6N2E2_3709 +0.5 2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_773 +0.5 2.3 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_725 +0.5 1.2 Nitrate/nitrite response regulator protein compare
Pf6N2E2_2642 +0.5 3.3 putative patatin-like phospholipase compare
Pf6N2E2_1431 +0.5 0.4 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_4148 +0.5 4.2 Glutamate-aspartate carrier protein compare
Pf6N2E2_1303 +0.5 0.8 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_596 +0.5 1.7 Arsenic efflux pump protein compare
Pf6N2E2_4947 +0.5 2.5 FIG00954030: hypothetical protein compare
Pf6N2E2_5499 +0.5 0.7 hypothetical protein compare
Pf6N2E2_5169 +0.5 0.8 FIG00954216: hypothetical protein compare
Pf6N2E2_1162 +0.5 0.7 Transmembrane amino acid efflux protein compare
Pf6N2E2_4413 +0.5 2.4 FIG004064: hypothetical protein compare
Pf6N2E2_5468 +0.5 2.1 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_3516 +0.5 0.8 Probable transmembrane protein compare
Pf6N2E2_3541 +0.5 1.9 Putative multicopper oxidases compare
Pf6N2E2_4594 +0.5 0.8 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_1740 +0.5 1.0 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_1516 +0.5 1.3 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_1893 +0.5 0.6 hypothetical protein compare
Pf6N2E2_1997 +0.5 0.5 FIG00956406: hypothetical protein compare
Pf6N2E2_5705 +0.4 2.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3793 +0.4 2.3 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_331 +0.4 0.8 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_2196 +0.4 0.9 FIG00953347: hypothetical protein compare
Pf6N2E2_355 +0.4 1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2887 +0.4 1.0 Aldose 1-epimerase compare
Pf6N2E2_6060 +0.4 0.4 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_3206 +0.4 0.5 hypothetical protein compare
Pf6N2E2_841 +0.4 0.7 hypothetical protein compare
Pf6N2E2_147 +0.4 2.9 Outer membrane component of tripartite multidrug resistance system compare
Pf6N2E2_4103 +0.4 2.7 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
Pf6N2E2_1938 +0.4 2.6 FIG00803671: hypothetical protein compare
Pf6N2E2_5567 +0.4 0.5 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_547 +0.4 1.0 Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68) compare
Pf6N2E2_5375 +0.4 0.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4694 +0.4 1.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2285 +0.4 0.6 FIG00954079: hypothetical protein compare
Pf6N2E2_884 +0.4 1.1 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_2571 +0.4 1.5 Chemotaxis response - phosphatase CheZ compare
Pf6N2E2_4741 +0.4 2.1 hypothetical protein compare
Pf6N2E2_5609 +0.4 2.3 DNA-binding response regulator ColR compare
Pf6N2E2_3794 +0.4 2.6 Proline iminopeptidase (EC 3.4.11.5) compare
Pf6N2E2_3850 +0.4 3.7 FIG074102: hypothetical protein compare
Pf6N2E2_2788 +0.4 0.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_1446 +0.4 2.4 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_3983 +0.4 2.4 Membrane bound c-di-GMP receptor LapD compare
Pf6N2E2_4558 +0.4 1.0 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf6N2E2_4569 +0.4 2.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) compare
Pf6N2E2_3560 +0.4 2.4 membrane protein, putative compare
Pf6N2E2_144 +0.4 3.4 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5610 +0.4 2.0 two-component system sensor protein compare
Pf6N2E2_5893 +0.4 1.5 FIG00956448: hypothetical protein compare
Pf6N2E2_2564 +0.4 1.6 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_586 +0.4 2.7 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_988 +0.4 2.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_5333 +0.4 3.2 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_414 +0.4 0.5 Chemotaxis protein CheD compare
Pf6N2E2_2900 +0.4 0.8 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_2546 +0.4 0.6 Carbon storage regulator compare
Pf6N2E2_1429 +0.4 1.3 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms