Experiment set23IT067 for Pseudomonas putida KT2440

Compare to:

Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

200 most important genes:

  gene name fitness t score description  
PP_1623 -6.9 -11.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_0760 -5.6 -5.9 conserved membrane protein of unknown function compare
PP_0164 -5.5 -3.8 conserved protein of unknown function compare
PP_3484 -5.4 -7.9 Response regulator receiver protein compare
PP_5289 -5.3 -3.6 Acetylglutamate kinase compare
PP_1898 -4.8 -4.7 MotA/TolQ/ExbB proton channel family protein compare
PP_1215 -4.8 -3.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_4058 -4.7 -10.5 1,4-alpha-glucan branching enzyme compare
PP_4342 -4.6 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_4902 -4.2 -4.1 Oligoribonuclease compare
PP_1237 -3.9 -2.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4994 -3.9 -5.5 conserved protein of unknown function compare
PP_1088 -3.9 -10.5 Argininosuccinate synthase compare
PP_0406 -3.8 -2.6 Nucleotidyltransferase family protein compare
PP_0293 -3.8 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1778 -3.7 -8.7 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 -3.4 -10.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0292 -3.2 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4943 -3.1 -3.0 putative Glycosyl transferase compare
PP_2214 -3.0 -5.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0965 -2.8 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0951 -2.8 -6.9 Ribosome hibernation promoting factor compare
PP_4880 -2.8 -10.6 exoribonuclease R compare
PP_5185 -2.8 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1428 -2.7 -2.6 Sigma factor AlgU negative regulatory protein compare
PP_4726 -2.7 -2.8 Chaperone protein DnaJ compare
PP_4008 -2.7 -7.6 ATP-dependent serine protease compare
PP_0967 -2.6 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0948 -2.6 -2.4 Phosphocarrier protein HPr compare
PP_0184 -2.6 -6.1 Argininosuccinate lyase compare
PP_4124 -2.6 -2.5 NADH-quinone oxidoreductase subunit G compare
PP_4143 -2.6 -5.0 conserved protein of unknown function compare
PP_1734 -2.5 -3.4 Probable septum site-determining protein MinC compare
PP_0966 -2.5 -8.6 Histidinol dehydrogenase compare
PP_5217 -2.5 -15.3 Polyphosphate kinase compare
PP_1198 -2.5 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5502 -2.4 -3.4 ribosome modulation factor compare
PP_3821 -2.4 -9.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5145 -2.3 -16.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0396 -2.3 -13.3 conserved protein of unknown function compare
PP_5015 -2.3 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0001 -2.3 -2.4 probable chromosome-partitioning protein compare
PP_2378 -2.3 -2.7 Fe/S biogenesis protein NfuA compare
PP_3833 -2.3 -5.0 Response regulator compare
PP_5014 -2.3 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0395 -2.2 -13.5 putative type IV piliation protein compare
PP_0289 -2.2 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0397 -2.2 -13.5 protein kinase compare
PP_1217 -2.1 -5.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2402 -2.1 -2.0 putative Sensor histidine kinase compare
PP_1733 -2.1 -3.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_4891 -2.1 -5.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4679 -2.1 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -2.0 -5.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4936 -2.0 -8.0 O-antigen polymerase compare
PP_4098 -2.0 -2.9 UvrABC system protein C compare
PP_4129 -1.9 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5310 -1.9 -6.2 junction-specific ATP-dependent DNA helicase compare
PP_4680 -1.9 -11.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0872 -1.9 -5.3 Peptide chain release factor 3 compare
PP_3511 -1.9 -5.2 Branched-chain-amino-acid aminotransferase compare
PP_3649 -1.9 -5.5 Transcriptional regulator, GntR family compare
PP_5146 -1.9 -7.1 RNA pyrophosphohydrolase compare
PP_4678 -1.8 -10.0 Ketol-acid reductoisomerase compare
PP_4004 -1.8 -4.2 DNA translocase FtsK compare
PP_1079 -1.8 -4.1 Ornithine carbamoyltransferase compare
PP_4892 -1.8 -5.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4874 -1.8 -1.7 50S ribosomal protein L9 compare
PP_4890 -1.8 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4131 -1.8 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_4355 -1.8 -2.9 flagellar export apparatus subunit compare
PP_4126 -1.8 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_5327 -1.8 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_1985 -1.8 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_1099 -1.8 -2.2 Cold shock protein CapB compare
PP_2327 -1.8 -4.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5045 -1.8 -4.7 tRNA sulfurtransferase compare
PP_4546 -1.7 -4.1 ATP-dependent helicase HrpA compare
PP_4785 -1.7 -5.0 conserved exported protein of unknown function compare
PP_4122 -1.7 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1493 -1.7 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4120 -1.7 -2.3 NADH-quinone oxidoreductase subunit B compare
PP_4940 -1.7 -7.4 Putative glycosyltransferase compare
PP_5514 -1.7 -1.4 conserved protein of unknown function compare
PP_1783 -1.7 -1.9 dTDP-glucose pyrophosphorylase compare
PP_1224 -1.7 -6.2 periplasmic subunit of the TolQRA transport system compare
PP_4066 -1.6 -3.1 methylglutaconyl-CoA hydratase compare
PP_5328 -1.6 -2.4 putative phosphate transport system permease protein compare
PP_4909 -1.6 -5.9 phosphoserine phosphatase compare
PP_1986 -1.6 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_1988 -1.6 -6.3 3-isopropylmalate dehydrogenase compare
PP_2862 -1.6 -7.2 Undecaprenyl-diphosphatase compare
PP_4130 -1.6 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0368 -1.6 -11.2 putative Acyl-CoA dehydrogenase compare
PP_5652 -1.5 -2.2 conserved protein of unknown function, phage origin compare
PP_2370 -1.5 -3.3 conserved protein of unknown function compare
PP_5248 -1.5 -2.0 putative hydrolase compare
PP_5128 -1.5 -7.3 Dihydroxy-acid dehydratase compare
PP_2217 -1.5 -2.5 enoyl-CoA hydratase compare
PP_1025 -1.5 -9.0 2-isopropylmalate synthase compare
PP_4944 -1.5 -3.1 Carbamoyltransferase compare
PP_0833 -1.5 -1.0 queuine tRNA-ribosyltransferase compare
PP_4804 -1.5 -1.0 RlpA-like lipoprotein compare
PP_2820 -1.5 -2.6 HTH-type transcriptional regulator nfxB compare
PP_5095 -1.5 -1.0 pyrroline-5-carboxylate reductase compare
PP_4261 -1.5 -5.1 cation-transporting P-type ATPase compare
PP_5093 -1.4 -1.9 twitching motility protein compare
PP_5346 -1.4 -5.3 pyruvate carboxylase subunit B compare
PP_0735 -1.4 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_0435 -1.4 -6.7 Peptidase, M23/M37 family compare
PP_1994 -1.4 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_4067 -1.4 -5.2 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2348 -1.4 -4.3 Sensor histidine kinase compare
PP_4938 -1.4 -9.1 putative Glycosyl transferase compare
PP_4364 -1.4 -3.8 putative Anti-sigma F factor antagonist compare
PP_4470 -1.4 -4.4 putative transcriptional regulator (Arc domain-containing) compare
PP_2433 -1.4 -2.3 conserved protein of unknown function compare
PP_0949 -1.4 -4.5 putative ATP-binding protein UPF0042 compare
PP_4964 -1.4 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4332 -1.4 -4.7 Chemotaxis protein CheW compare
PP_4517 -1.4 -1.9 conserved protein of unknown function compare
PP_1142 -1.3 -1.5 conserved protein of unknown function compare
PP_2168 -1.3 -5.6 Transaldolase compare
PP_4471 -1.3 -3.7 Magnesium transporter compare
PP_0914 -1.3 -6.6 GGDEF domain protein compare
PP_3519 -1.3 -1.5 putative Lipoprotein compare
PP_4993 -1.3 -4.5 Glutathione synthetase compare
PP_4375 -1.3 -4.8 flagellar chaperone, inhibits premature FliC assembly compare
PP_5028 -1.3 -3.0 proline iminopeptidase compare
PP_5329 -1.3 -1.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1318 -1.3 -5.4 Cytochrome b compare
PP_4379 -1.3 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0852 -1.3 -4.5 Transcriptional regulator, Cro/CI family compare
PP_5350 -1.3 -3.2 Transcriptional regulator, RpiR family compare
PP_2903 -1.3 -1.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3551 -1.3 -1.2 DNA-binding response regulator, LuxR family compare
PP_2337 -1.3 -2.0 aconitate isomerase compare
PP_5347 -1.2 -7.4 pyruvate carboxylase subunit A compare
PP_4121 -1.2 -3.5 NADH-quinone oxidoreductase subunit C/D compare
PP_4065 -1.2 -4.8 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_2145 -1.2 -2.6 beta-N-acetylglucosaminidase compare
PP_2390 -1.2 -5.7 Transcriptional regulator, LysR family compare
PP_3999 -1.2 -5.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4370 -1.2 -2.4 Flagellar hook-basal body complex protein FliE compare
PP_4338 -1.2 -5.9 Chemotaxis histidine kinase CheA compare
PP_1906 -1.2 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_4354 -1.2 -3.5 flagellar export apparatus subunit compare
PP_1468 -1.2 -2.5 Tyrosine recombinase XerD compare
PP_4988 -1.2 -5.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4532 -1.2 -2.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1691 -1.2 -2.2 conserved protein of unknown function compare
PP_4009 -1.2 -4.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_0276 -1.2 -1.4 Transcriptional regulator, Cro/CI family compare
PP_4361 -1.2 -4.5 Flagellar hook-length control protein FliK compare
PP_4388 -1.2 -8.3 Flagellar hook protein FlgE compare
PP_4941 -1.2 -4.8 conserved exported protein of unknown function compare
PP_4386 -1.2 -3.8 flagellar basal-body rod protein FlgF compare
PP_4341 -1.2 -6.6 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4376 -1.2 -6.8 flagellar filament capping protein compare
PP_1319 -1.1 -4.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2437 -1.1 -6.4 putative Acyl-CoA dehydrogenase compare
PP_1804 -1.1 -6.7 Glycosyl transferase WbpL compare
PP_4368 -1.1 -3.6 flagellar motor switch protein compare
PP_3946 -1.1 -1.4 HTH-type transcriptional repressor NicR compare
PP_2328 -1.1 -3.2 Phosphoadenosine phosphosulfate reductase compare
PP_4642 -1.1 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_4561 -1.1 -1.2 stress response protein compare
PP_5051 -1.1 -2.1 conserved protein of unknown function compare
PP_4385 -1.1 -3.8 flagellar basal-body rod protein FlgG compare
PP_4378 -1.1 -7.5 flagellin, filament structural protein compare
PP_2847 -1.1 -1.9 Urease accessory protein UreJ compare
PP_4398 -1.1 -6.7 Major facilitator family transporter compare
PP_4343 -1.1 -3.1 Flagellar biosynthesis protein FlhF compare
PP_4380 -1.1 -6.6 Flagellar hook-associated protein FlgL compare
PP_5295 -1.1 -2.2 conserved protein of unknown function compare
PP_4337 -1.1 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4381 -1.1 -6.4 Flagellar hook-associated protein FlgK compare
PP_5393 -1.1 -1.7 putative metal-binding chaperone compare
PP_4344 -1.1 -6.4 flagellar export pore protein compare
PP_1355 -1.1 -6.7 Muropeptide permease AmpG compare
PP_4382 -1.1 -4.4 Peptidoglycan hydrolase FlgJ compare
PP_2371 -1.0 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1328 -1.0 -1.9 Protein MraZ compare
PP_2107 -1.0 -1.6 conserved protein of unknown function compare
PP_5230 -1.0 -2.3 Tyrosine recombinase XerC compare
PP_4204 -1.0 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4575 -1.0 -2.4 Urea amidolyase-related protein compare
PP_2030 -1.0 -3.4 conserved protein of unknown function compare
PP_4365 -1.0 -2.7 Flagellar protein FliJ compare
PP_3971 -1.0 -1.7 conserved protein of unknown function compare
PP_t13 -1.0 -1.9 tRNA-Lys compare
PP_0126 -1.0 -3.1 Cytochrome c4 compare
PP_0123 -1.0 -4.7 DNA polymerase I, 5 compare
PP_4696 -1.0 -2.5 Nitrogen regulation protein NR(I) compare
PP_0401 -1.0 -2.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4816 -1.0 -4.2 conserved protein of unknown function compare
PP_5294 -1.0 -4.5 Ribonuclease PH compare
PP_2027 -1.0 -3.7 conserved exported protein of unknown function compare
PP_4358 -1.0 -3.6 flagellar synthesis, switching and energizing component compare
PP_0789 -0.9 -3.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare


Specific Phenotypes

For 1 genes in this experiment

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs in Pseudomonas putida KT2440

For soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs across organisms