Experiment set22S219 for Agrobacterium fabrum C58

Compare to:

Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075

200 most important genes:

  gene name fitness t score description  
Atu1850 -8.0 -5.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1307 -7.4 -8.8 dihydroorotase compare
Atu1750 -6.9 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1845 -6.8 -6.2 phosphoribosylformylglycinamidine synthase I compare
Atu1075 -6.6 -7.9 amidophosphoribosyltransferase compare
Atu1308 -6.5 -7.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1844 -6.5 -4.2 Phosphoribosylformylglycinamidine synthetase compare
Atu2522 -6.3 -17.2 agrobacterium chromosomal virulence protein B compare
Atu3755 -6.1 -4.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1140 -6.1 -5.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3598 -6.1 -3.4 thiol:disulfide interchange protein compare
Atu1141 -5.6 -9.4 Phosphoribosylglycinamide synthetase compare
Atu0647 -5.6 -6.7 phosphoribosylamine--glycine ligase compare
Atu2040 -5.3 -5.1 phosphoserine phosphatase compare
Atu0038 -5.2 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3754 -5.2 -6.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0679 -5.1 -3.5 ATP phosphoribosyltransferase compare
Atu0298 -5.0 -9.6 orotidine 5 compare
Atu0399 -4.9 -8.2 dihydroorotase compare
Atu6098 -4.9 -1.6 transcriptional regulator, HTH family compare
Atu0486 -4.8 -6.0 dihydroorotate dehydrogenase compare
Atu3908 -4.8 -14.7 GntR family transcriptional regulator compare
Atu4711 -4.6 -6.0 two component sensor kinase compare
Atu3885 -4.3 -7.2 inositol monophosphatase compare
Atu0678 -4.1 -2.8 histidyl-tRNA synthetase compare
Atu0769 -4.1 -2.6 protoheme IX farnesyltransferase compare
Atu1327 -4.0 -4.1 NADH-ubiquinone oxidoreductase compare
Atu8167 -4.0 -14.1 putative transmembrane protein compare
Atu3706 -3.9 -6.0 D-3-phosphoglycerate dehydrogenase compare
Atu3353 -3.9 -12.9 mannose-1-phosphate guanylyltransferase compare
Atu0400 -3.9 -7.3 orotate phosphoribosyltransferase compare
Atu1422 -3.8 -10.6 transcriptional regulator, MarR family compare
Atu2346 -3.7 -16.9 ABC transporter, membrane spanning protein (sugar) compare
Atu0537 -3.7 -2.5 histidinol dehydrogenase compare
Atu2183 -3.6 -9.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4055 -3.5 -7.9 endo-1,3-1,4-beta-glycanase compare
Atu1205 -3.5 -17.3 threonine dehydratase compare
Atu3311 -3.4 -17.1 phosphomannose isomerase compare
Atu2347 -3.2 -10.7 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu4618 -3.2 -13.5 dTDP-rhamnose-3,5-epimerase compare
Atu4019 -3.1 -8.2 two component response regulator compare
Atu2521 -3.1 -17.3 Protein regulated by acid pH compare
Atu4614 -3.1 -9.8 glycosyltransferase compare
Atu6021 -3.0 -16.5 D-nopaline dehydrogenase compare
Atu2289 -3.0 -11.1 anthranilate synthase component I and II compare
Atu4499 -3.0 -7.7 hypothetical protein compare
Atu4615 -3.0 -13.2 glucose-1-phosphate thymidylyltransferase compare
Atu0784 -2.9 -4.0 hypothetical protein compare
Atu1417 -2.9 -8.9 enoyl-CoA hydratase compare
Atu6019 -2.8 -18.4 D-nopaline dehydrogenase compare
Atu6144 -2.8 -15.7 agrocinopine phosphodiesterase compare
Atu1030 -2.7 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0354 -2.7 -3.1 ferric uptake regulator compare
Atu4018 -2.7 -10.6 two component sensor kinase compare
Atu4617 -2.7 -10.8 dTDP-D-glucose-4,6-dehydratase compare
Atu1419 -2.7 -7.3 transcriptional regulator, GntR family compare
Atu1470 -2.7 -1.7 Camphor resistance protein compare
Atu2439 -2.7 -1.2 hypothetical protein compare
Atu6131 -2.7 -5.8 TraR Antiactivator compare
Atu4217 -2.6 -1.4 TetR family transcriptional regulator compare
Atu1364 -2.6 -5.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3707 -2.6 -1.8 phosphoserine aminotransferase compare
Atu4613 -2.6 -13.8 glycosyltransferase compare
Atu6150 -2.6 -14.0 P-450 monooxygenase compare
Atu0043 -2.6 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu0031 -2.5 -1.4 PTS system, IIA component compare
Atu4502 -2.5 -8.5 cobalamin synthesis protein compare
Atu4166 -2.5 -2.3 UDP-glucose 4-epimerase compare
Atu0703 -2.5 -3.5 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0141 -2.5 -1.8 cytochrome O ubiquinol oxidase subunit I compare
Atu0050 -2.4 -5.3 two component response regulator compare
Atu4773 -2.4 -2.3 two component response regulator compare
Atu6020 -2.4 -7.8 conserved hypothetical protein compare
Atu4498 -2.4 -11.3 hypothetical protein compare
Atu2073 -2.3 -6.6 membrane protein compare
Atu1838 -2.3 -3.4 ABC transporter, substrate binding protein (amino acid) compare
Atu1163 -2.2 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0269 -2.2 -4.2 exodeoxyribonuclease VII large subunit compare
Atu2554 -2.1 -3.0 lysyl-tRNA synthetase compare
Atu1687 -2.1 -3.2 anthranilate phosphoribosyltransferase compare
Atu1705 -2.1 -5.3 SEC-independent protein translocase protein compare
Atu0361 -2.1 -2.5 transcriptional regulator compare
Atu3469 -2.1 -3.4 phosphoglyceromutase compare
Atu4610 -2.0 -10.0 sugar nucleotide epimerase/dehydratase compare
Atu3719 -2.0 -7.5 MutT/nudix family protein compare
Atu0041 -2.0 -1.2 glutamine amidotransferase compare
Atu2217 -2.0 -5.8 hypothetical protein compare
Atu6145 -2.0 -12.2 arabinose phosphate phosphatase compare
Atu4317 -2.0 -3.5 TetR family transcriptional regulator compare
Atu2692 -2.0 -3.5 intracellular septation protein compare
Atu0051 -1.9 -4.2 two component sensor kinase compare
Atu0328 -1.9 -9.5 heat-inducible transcription repressor compare
Atu0086 -1.9 -1.2 ribosome-binding factor A compare
Atu4608 -1.8 -11.1 hypothetical protein compare
Atu0422 -1.8 -2.1 ABC transporter, membrane spanning protein compare
Atu1333 -1.8 -4.2 outer membrane protein compare
Atu2379 -1.8 -8.5 phosphomannomutase compare
Atu0912 -1.7 -1.2 Na+/H+ antiporter compare
Atu1468 -1.7 -8.8 hypothetical protein compare
Atu0999 -1.7 -4.8 magnesium transport protein compare
Atu4609 -1.7 -9.2 glycosyltransferase compare
Atu0153 -1.7 -5.2 transcriptional regulator, Fur family compare
Atu0142 -1.7 -3.3 cytochrome o ubiquinol oxidase subunit II compare
Atu0189 -1.7 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2052 -1.7 -3.6 hypothetical protein compare
Atu0030 -1.7 -1.8 phosphocarrier protein HPr compare
Atu0017 -1.6 -1.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0099 -1.6 -5.5 prephenate dehydratase compare
Atu0331 -1.6 -2.8 sigma-54 modulation protein compare
Atu0040 -1.6 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1028 -1.6 -1.6 hypothetical protein compare
Atu2650 -1.6 -9.3 glycerol-3-phosphate dehydrogenase compare
Atu2207 -1.6 -3.2 two component sensor kinase compare
Atu4616 -1.6 -1.3 dTDP-4-dehydrorhamnose reductase compare
Atu1714 -1.5 -1.5 exonuclease III compare
Atu0039 -1.5 -0.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu3763 -1.5 -0.9 hypothetical protein compare
Atu1359 -1.5 -1.2 dnaK deletion suppressor protein compare
Atu0690 -1.5 -2.0 hypothetical protein compare
Atu5115 -1.5 -2.4 hypothetical protein compare
Atu4505 -1.5 -6.9 LacI family transcriptional regulator compare
Atu2790 -1.4 -2.2 3-isopropylmalate dehydratase, small subunit compare
Atu1874 -1.4 -2.2 RecA protein compare
Atu1688 -1.4 -1.9 indole-3-glycerol-phosphate synthase compare
Atu0499 -1.4 -5.8 hypothetical protein compare
Atu2718 -1.4 -5.8 homoserine O-succinyltransferase compare
Atu0893 -1.4 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0205 -1.4 -7.0 methylmalonate-semialdehyde dehydrogenase compare
Atu5540 -1.3 -1.5 hypothetical protein compare
Atu0786 -1.3 -4.3 peptidase, family M16 compare
Atu1803 -1.3 -4.2 cold shock protein compare
Atu1588 -1.3 -4.6 homoserine dehydrogenase compare
Atu1513 -1.3 -5.7 ABC excinuclease subunit A compare
Atu4346 -1.3 -2.9 hypothetical protein compare
Atu1354 -1.3 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2730 -1.3 -8.9 beta (1-->2) glucan biosynthesis protein compare
Atu2036 -1.3 -0.9 acetolactate synthase III, large subunit compare
Atu2239 -1.3 -3.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1251 -1.2 -6.0 O-acetylhomoserine sulfhydrylase compare
Atu2115 -1.2 -6.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2728 -1.2 -0.8 beta (1-->2) glucan export ATP-binding protein compare
Atu2709 -1.2 -8.4 3-isopropylmalate dehydratase, large subunit compare
Atu2264 -1.2 -5.7 2-isopropylmalate synthase compare
Atu1446 -1.2 -1.7 two component response regulator compare
Atu1503 -1.2 -1.2 hypothetical protein compare
Atu0971 -1.2 -1.1 two component sensor kinase compare
Atu3219 -1.2 -8.4 dihydroxy-acid dehydratase compare
Atu8095 -1.2 -6.6 hypothetical protein compare
Atu2682 -1.2 -3.7 hypothetical protein compare
Atu1464 -1.2 -4.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu0978 -1.2 -3.9 two component response regulator compare
Atu2791 -1.2 -4.7 3-isopropylmalate dehydrogenase compare
Atu0272 -1.2 -3.6 transcriptional regulator, MarR family compare
Atu1780 -1.2 -6.0 ATP-dependent DNA helicase compare
Atu2772 -1.2 -5.1 Invasion protein A compare
Atu2824 -1.1 -2.8 hypothetical protein compare
Atu1708 -1.1 -5.5 hypothetical protein compare
Atu1099 -1.1 -4.9 hypothetical protein compare
Atu4514 -1.1 -2.6 RpiR family transcriptional regulator compare
Atu1707 -1.1 -5.3 hypothetical protein compare
Atu0923 -1.1 -5.4 hypothetical protein compare
Atu3634 -1.1 -3.6 penicillin-binding protein dacf precursor compare
Atu1646 -1.1 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1021 -1.1 -1.8 outer membrane protein compare
Atu4162 -1.1 -4.8 two-component response regulator compare
Atu3744 -1.1 -6.9 ABC transporter permease compare
Atu5125 -1.1 -3.0 GntR family transcriptional regulator compare
Atu1462 -1.1 -7.0 glycine cleavage system protein P2 compare
Atu0036 -1.1 -2.0 hypothetical protein compare
Atu4148 -1.0 -3.9 UDP-glucuronic acid epimerase compare
Atu3517 -1.0 -3.2 acetyltransferase compare
Atu0801 -1.0 -7.1 chromosome segregation protein compare
Atu3739 -1.0 -2.5 phosphoglycerate kinase compare
Atu1445 -1.0 -3.8 two component sensor kinase compare
Atu2083 -1.0 -1.9 DNA repair protein RecN compare
Atu1645 -1.0 -3.5 ABC transporter, substrate binding protein compare
Atu1463 -1.0 -4.0 glycine cleavage system component H compare
Atu2237 -1.0 -4.4 cytochrome c1 compare
Atu2555 -1.0 -2.3 L-lysine 2,3-aminomutase compare
Atu0601 -1.0 -5.7 oxidoreductase compare
Atu0780 -1.0 -5.3 hypothetical protein compare
Atu3485 -1.0 -4.7 short chain dehydrogenase compare
Atu6138 -1.0 -3.7 Repressor of the acc and arc operons compare
Atu1129 -0.9 -4.2 excinuclease ABC chain C compare
Atu1778 -0.9 -6.7 transcription-repair coupling factor compare
Atu3579 -0.9 -1.5 lactoylglutathione lyase compare
Atu2238 -0.9 -4.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4099 -0.9 -4.6 hypothetical protein compare
Atu1238 -0.9 -5.4 polysaccharide export protein compare
Atu0071 -0.9 -5.5 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu0837 -0.9 -3.0 transcriptional regulator, MarR family compare
Atu6140 -0.9 -7.1 ABC transporter, nucleotide binding/ATPase protein (agrocinopine) compare
Atu8150 -0.9 -3.1 hypothetical protein compare
Atu4050 -0.9 -3.1 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2163 -0.9 -1.1 hypothetical protein compare
Atu3519 -0.9 -4.1 peptidyl-prolyl cis-trans isomerase compare
Atu1602 -0.9 -3.8 transcriptional activator, Crp family compare
Atu2684 -0.9 -0.9 hypothetical protein compare
Atu8115 -0.9 -4.3 Hypothetical Protein compare
Atu1619 -0.9 -1.7 protein-export membrane protein SECG compare


Specific Phenotypes

For 18 genes in this experiment

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 in Agrobacterium fabrum C58

For in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075 across organisms