Experiment set22IT073 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Choline chloride 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS10325 +2.3 14.9 MFS transporter compare
PFLU_RS15910 +1.7 2.6 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS03585 +1.7 4.4 hypothetical protein compare
PFLU_RS11475 +1.7 1.2 histidine kinase compare
PFLU_RS02115 +1.5 2.9 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS03075 +1.5 1.8 translation initiation factor Sui1 compare
PFLU_RS07520 +1.5 1.6 hypothetical protein compare
PFLU_RS28080 +1.3 3.6 hypothetical protein compare
PFLU_RS12650 +1.3 2.9 hypothetical protein compare
PFLU_RS22195 +1.3 1.9 DEAD/DEAH box helicase compare
PFLU_RS09100 +1.3 4.5 HAMP domain-containing protein compare
PFLU_RS18585 +1.3 1.5 high frequency lysogenization protein HflD compare
PFLU_RS26925 +1.3 3.0 hypothetical protein compare
PFLU_RS11415 +1.2 1.7 protein glxC compare
PFLU_RS10305 +1.2 5.6 sulfotransferase family protein compare
PFLU_RS21215 +1.2 1.6 YheU family protein compare
PFLU_RS18805 +1.1 2.2 ABC transporter ATP-binding protein compare
PFLU_RS19855 +1.1 1.6 DUF4398 domain-containing protein compare
PFLU_RS06855 +1.1 1.7 helix-turn-helix transcriptional regulator compare
PFLU_RS15165 +1.1 1.6 RidA family protein compare
PFLU_RS13315 +1.1 2.8 class I SAM-dependent methyltransferase compare
PFLU_RS17160 +1.1 1.8 hypothetical protein compare
PFLU_RS00870 +1.1 1.5 hypothetical protein compare
PFLU_RS01005 +1.1 1.1 ABC transporter ATP-binding protein compare
PFLU_RS17545 +1.1 0.8 DUF465 domain-containing protein compare
PFLU_RS17615 +1.1 1.3 DeoR/GlpR transcriptional regulator compare
PFLU_RS05910 +1.1 1.5 response regulator transcription factor compare
PFLU_RS10300 +1.1 8.3 transaldolase compare
PFLU_RS10310 +1.1 5.0 SDR family oxidoreductase compare
PFLU_RS02180 +1.1 1.1 thioredoxin TrxC compare
PFLU_RS22645 +1.0 7.4 EamA family transporter compare
PFLU_RS02865 +1.0 2.6 GNAT family N-acetyltransferase compare
PFLU_RS02515 +1.0 3.6 flagellar motor protein MotB compare
PFLU_RS18065 +1.0 2.6 antibiotic biosynthesis monooxygenase compare
PFLU_RS11105 +1.0 2.4 hypothetical protein compare
PFLU_RS09505 +1.0 1.7 HU family DNA-binding protein compare
PFLU_RS07320 +1.0 2.2 hypothetical protein compare
PFLU_RS00790 +1.0 2.0 hypothetical protein compare
PFLU_RS15515 +1.0 1.9 hypothetical protein compare
PFLU_RS12635 +1.0 1.4 conjugal transfer protein TraR compare
PFLU_RS18075 +1.0 2.2 LysR family transcriptional regulator compare
PFLU_RS30950 +1.0 2.8 cytochrome c compare
PFLU_RS05960 +1.0 2.4 NADH:flavin oxidoreductase/NADH oxidase compare
PFLU_RS13715 +1.0 1.0 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS07540 +0.9 1.8 class II glutamine amidotransferase compare
PFLU_RS27785 +0.9 3.0 DUF2780 domain-containing protein compare
PFLU_RS14420 +0.9 1.4 chemotactic transduction protein ChpE compare
PFLU_RS19490 +0.9 4.0 LacI family transcriptional regulator compare
PFLU_RS31740 +0.9 2.7 hypothetical protein compare
PFLU_RS17815 +0.9 1.0 response regulator compare
PFLU_RS03960 +0.9 1.4 tRNA-Thr compare
PFLU_RS19550 +0.9 0.7 ABC transporter ATP-binding protein compare
PFLU_RS11870 +0.9 1.7 type II secretion system protein GspG compare
PFLU_RS28570 +0.9 3.0 DUF2868 domain-containing protein compare
PFLU_RS14810 +0.9 0.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS13300 +0.9 1.6 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS31795 +0.9 2.2 hypothetical protein compare
PFLU_RS24785 +0.9 4.5 outer membrane protein assembly factor BamB compare
PFLU_RS09190 +0.9 1.2 hypothetical protein compare
PFLU_RS08990 +0.9 1.3 hypothetical protein compare
PFLU_RS10965 +0.9 2.9 transporter substrate-binding domain-containing protein compare
PFLU_RS03995 +0.9 0.8 hypothetical protein compare
PFLU_RS14875 +0.9 2.4 hypothetical protein compare
PFLU_RS10295 +0.9 2.7 HAD-IA family hydrolase compare
PFLU_RS23070 +0.8 0.6 50S ribosomal protein L32 compare
PFLU_RS12365 +0.8 2.8 IclR family transcriptional regulator compare
PFLU_RS01910 +0.8 0.7 sterol-binding protein compare
PFLU_RS19555 +0.8 0.9 histidine phosphatase family protein compare
PFLU_RS21580 +0.8 1.2 MOSC domain-containing protein compare
PFLU_RS17925 +0.8 2.5 hypothetical protein compare
PFLU_RS17660 +0.8 2.4 DUF2946 domain-containing protein compare
PFLU_RS18395 +0.8 0.9 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS11350 +0.8 2.6 LLM class flavin-dependent oxidoreductase compare
PFLU_RS08260 +0.8 2.9 CHAD domain-containing protein compare
PFLU_RS15555 +0.8 3.3 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
PFLU_RS17800 +0.8 2.6 diguanylate cyclase compare
PFLU_RS04660 +0.8 2.6 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS09620 +0.8 2.1 2-keto-4-pentenoate hydratase compare
PFLU_RS02010 +0.8 2.5 fimbriae biosynthesis protein compare
PFLU_RS15160 +0.8 2.3 beta-ketoacyl-ACP synthase II compare
PFLU_RS31065 +0.8 1.0 helix-turn-helix domain-containing protein compare
PFLU_RS05750 +0.8 1.1 methionine--tRNA ligase compare
PFLU_RS10405 +0.8 1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS02370 +0.8 3.2 glycosyltransferase compare
PFLU_RS08860 +0.7 2.0 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS03860 +0.7 2.3 hypothetical protein compare
PFLU_RS03160 +0.7 1.7 tetratricopeptide repeat protein compare
PFLU_RS02175 +0.7 1.8 hypothetical protein compare
PFLU_RS11490 +0.7 1.4 ABC transporter ATP-binding protein compare
PFLU_RS14815 +0.7 3.9 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
PFLU_RS25395 +0.7 1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PFLU_RS15915 +0.7 1.9 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
PFLU_RS05345 +0.7 1.2 hypothetical protein compare
PFLU_RS31520 +0.7 1.9 TonB-dependent receptor compare
PFLU_RS23800 +0.7 2.5 amino acid transporter compare
PFLU_RS29120 +0.7 1.7 YaiI/YqxD family protein compare
PFLU_RS26690 +0.7 1.5 hypothetical protein compare
PFLU_RS12710 +0.7 1.9 AbrB family transcriptional regulator compare
PFLU_RS17490 +0.7 1.9 glutaminase B compare
PFLU_RS11210 +0.7 2.4 ABC transporter ATP-binding protein compare
PFLU_RS03480 +0.7 2.2 heavy metal response regulator transcription factor compare
PFLU_RS11685 +0.7 1.4 AraC family transcriptional regulator compare
PFLU_RS19820 +0.7 1.3 GNAT family N-acetyltransferase compare
PFLU_RS14005 +0.7 1.2 hypothetical protein compare
PFLU_RS13825 +0.7 0.7 hypothetical protein compare
PFLU_RS16985 +0.7 3.1 GFA family protein compare
PFLU_RS25815 +0.7 1.1 transcription termination/antitermination protein NusA compare
PFLU_RS07460 +0.7 2.3 class I SAM-dependent methyltransferase compare
PFLU_RS19595 +0.7 1.7 iron export ABC transporter permease subunit FetB compare
PFLU_RS16805 +0.7 1.5 SDR family oxidoreductase compare
PFLU_RS14550 +0.7 2.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS24145 +0.7 2.4 mechanosensitive ion channel compare
PFLU_RS26580 +0.7 1.7 YdcF family protein compare
PFLU_RS25390 +0.7 2.6 hypothetical protein compare
PFLU_RS31440 +0.7 1.0 hypothetical protein compare
PFLU_RS08875 +0.7 1.5 heme-binding protein compare
PFLU_RS21245 +0.7 2.8 hypothetical protein compare
PFLU_RS09955 +0.7 3.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PFLU_RS16565 +0.7 1.4 hypothetical protein compare
PFLU_RS11175 +0.7 2.1 NAD(P)-dependent oxidoreductase compare
PFLU_RS18170 +0.7 1.9 ABC transporter permease compare
PFLU_RS17150 +0.7 2.0 hypothetical protein compare
PFLU_RS02510 +0.7 4.6 flagellar motor stator protein MotA compare
PFLU_RS13295 +0.7 2.6 HAMP domain-containing protein compare
PFLU_RS13225 +0.7 1.9 hypothetical protein compare
PFLU_RS26720 +0.7 2.6 oxidoreductase compare
PFLU_RS01245 +0.7 1.9 taurine dioxygenase compare
PFLU_RS23445 +0.7 1.2 DUF1003 domain-containing protein compare
PFLU_RS07525 +0.7 0.7 cyclic nucleotide-binding domain-containing protein compare
PFLU_RS07065 +0.7 1.6 hypothetical protein compare
PFLU_RS29980 +0.7 2.8 metal ABC transporter permease compare
PFLU_RS16955 +0.7 2.2 hypothetical protein compare
PFLU_RS14560 +0.7 2.0 DNA-binding protein compare
PFLU_RS25305 +0.7 2.8 dihydromonapterin reductase compare
PFLU_RS16695 +0.7 1.3 branched-chain amino acid ABC transporter permease compare
PFLU_RS01130 +0.7 1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01920 +0.7 2.0 hypothetical protein compare
PFLU_RS22380 +0.7 2.5 sulfite exporter TauE/SafE family protein compare
PFLU_RS11485 +0.7 2.2 PAS domain-containing protein compare
PFLU_RS01750 +0.7 1.7 hypothetical protein compare
PFLU_RS17560 +0.7 2.7 response regulator compare
PFLU_RS08370 +0.7 1.6 hypothetical protein compare
PFLU_RS10365 +0.6 1.9 DUF4123 domain-containing protein compare
PFLU_RS09495 +0.6 1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS30710 +0.6 2.0 GNAT family N-acetyltransferase compare
PFLU_RS01255 +0.6 2.3 taurine ABC transporter ATP-binding subunit compare
PFLU_RS19545 +0.6 2.9 ABC transporter permease compare
PFLU_RS31710 +0.6 1.3 hypothetical protein compare
PFLU_RS02040 +0.6 2.0 hypothetical protein compare
PFLU_RS16310 +0.6 0.8 hypothetical protein compare
PFLU_RS18185 +0.6 1.7 SDR family oxidoreductase compare
PFLU_RS08695 +0.6 1.5 DUF3077 domain-containing protein compare
PFLU_RS18110 +0.6 1.9 GlxA family transcriptional regulator compare
PFLU_RS10055 +0.6 1.8 hypothetical protein compare
PFLU_RS19045 +0.6 1.8 spore coat protein U domain-containing protein compare
PFLU_RS02695 +0.6 2.5 azurin compare
PFLU_RS10315 +0.6 3.2 hypothetical protein compare
PFLU_RS26290 +0.6 0.5 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS19225 +0.6 2.8 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS10290 +0.6 2.0 glucose 1-dehydrogenase compare
PFLU_RS13205 +0.6 1.4 DUF883 family protein compare
PFLU_RS04010 +0.6 3.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS21985 +0.6 1.4 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS23735 +0.6 1.7 D-hexose-6-phosphate mutarotase compare
PFLU_RS20875 +0.6 2.5 hypothetical protein compare
PFLU_RS01665 +0.6 1.1 glutaredoxin 3 compare
PFLU_RS11510 +0.6 1.2 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
PFLU_RS15550 +0.6 5.0 filamentous hemagglutinin N-terminal domain-containing protein compare
PFLU_RS31435 +0.6 1.5 ABC transporter ATP-binding protein compare
PFLU_RS29745 +0.6 1.1 response regulator compare
PFLU_RS15770 +0.6 2.1 type II secretion system protein GspG compare
PFLU_RS30185 +0.6 3.0 DUF4880 domain-containing protein compare
PFLU_RS08385 +0.6 1.7 PilZ domain-containing protein compare
PFLU_RS00700 +0.6 2.0 winged helix DNA-binding protein compare
PFLU_RS30505 +0.6 1.9 hypothetical protein compare
PFLU_RS03930 +0.6 1.5 DNA gyrase inhibitor YacG compare
PFLU_RS26505 +0.6 1.0 DUF2788 domain-containing protein compare
PFLU_RS14995 +0.6 1.2 response regulator transcription factor compare
PFLU_RS06450 +0.6 1.3 ligase-associated DNA damage response endonuclease PdeM compare
PFLU_RS23890 +0.6 1.3 pseudouridine synthase compare
PFLU_RS01495 +0.6 2.0 SGNH/GDSL hydrolase family protein compare
PFLU_RS31070 +0.6 2.0 hypothetical protein compare
PFLU_RS25415 +0.6 2.2 MurR/RpiR family transcriptional regulator compare
PFLU_RS19965 +0.6 3.7 TonB-dependent receptor compare
PFLU_RS16895 +0.6 1.5 thioesterase compare
PFLU_RS24300 +0.6 1.2 hypothetical protein compare
PFLU_RS30910 +0.6 2.2 winged helix-turn-helix domain-containing protein compare
PFLU_RS24320 +0.6 1.8 response regulator transcription factor compare
PFLU_RS18010 +0.6 1.8 dihydrofolate reductase compare
PFLU_RS11845 +0.6 0.9 DUF4880 domain-containing protein compare
PFLU_RS13215 +0.6 1.3 LysR family transcriptional regulator compare
PFLU_RS08530 +0.6 2.1 MarR family transcriptional regulator compare
PFLU_RS20335 +0.6 1.0 hypothetical protein compare
PFLU_RS04870 +0.6 2.2 alginate O-acetylase compare
PFLU_RS15935 +0.6 2.0 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
PFLU_RS12535 +0.6 3.0 polyamine ABC transporter substrate-binding protein compare
PFLU_RS25515 +0.6 2.2 tryptophan 2,3-dioxygenase compare
PFLU_RS19800 +0.6 1.9 cupin domain-containing protein compare
PFLU_RS08120 +0.6 1.7 hypothetical protein compare
PFLU_RS11905 +0.6 2.2 alkaline phosphatase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Choline chloride in Pseudomonas fluorescens SBW25-INTG

For carbon source Choline chloride across organisms